Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06315

Experiment: R2A with Chloramphenicol 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloramphenicol 0.001 mg/ml
1,549,914	+		CA265_RS06305	0.86	+0.2
1,549,915	-		CA265_RS06305	0.86	+0.5
1,549,920	+		CA265_RS06305	0.87	-0.2
1,549,993	-				+0.1
1,550,051	-				-0.2
1,550,086	+				+1.2
1,550,086	+				+1.2
1,550,148	+				-0.4
1,550,148	+				-0.2
1,550,149	-				+0.5
1,550,149	-				-0.6
1,550,208	-		CA265_RS06310	0.18	+1.1
1,550,309	+		CA265_RS06310	0.33	-0.2
1,550,331	-		CA265_RS06310	0.36	+0.9
1,550,331	-		CA265_RS06310	0.36	+0.2
1,550,384	-		CA265_RS06310	0.44	+0.2
1,550,440	+		CA265_RS06310	0.53	+0.6
1,550,525	+		CA265_RS06310	0.66	-0.2
1,550,526	-		CA265_RS06310	0.66	-0.0
1,550,526	-		CA265_RS06310	0.66	+0.1
1,550,526	-		CA265_RS06310	0.66	+0.0
1,550,603	-		CA265_RS06310	0.78	+0.3
1,550,671	+		CA265_RS06310	0.88	+0.0
1,550,671	+		CA265_RS06310	0.88	+1.1
1,550,672	-		CA265_RS06310	0.88	-0.2
1,550,697	-				+0.1
1,550,714	+				-0.7
1,550,766	+				-0.5
1,550,794	+				-0.1
1,550,822	+				-0.2
1,550,834	-				+0.3
1,550,840	-				-0.4
1,550,886	-				+0.0
1,550,894	+				+0.9
1,550,895	-				-0.5
1,550,895	-				-0.1
1,551,014	+		CA265_RS06315	0.20	-0.2
1,551,015	-		CA265_RS06315	0.20	-0.1
1,551,018	+		CA265_RS06315	0.20	-0.1
1,551,018	+		CA265_RS06315	0.20	+0.1
1,551,058	-		CA265_RS06315	0.26	-1.3
1,551,063	-		CA265_RS06315	0.27	-0.5
1,551,104	+		CA265_RS06315	0.33	+0.6
1,551,116	+		CA265_RS06315	0.35	-0.8
1,551,151	+		CA265_RS06315	0.41	+0.2
1,551,159	-		CA265_RS06315	0.42	+0.5
1,551,211	+		CA265_RS06315	0.50	+0.3
1,551,212	-		CA265_RS06315	0.50	-0.2
1,551,268	+		CA265_RS06315	0.59	-0.3
1,551,405	+		CA265_RS06315	0.80	-0.5
1,551,408	+		CA265_RS06315	0.81	-0.9
1,551,468	-				+0.2
1,551,468	-				+0.3
1,551,512	+				-0.1
1,551,547	+				+0.2
1,551,547	-				+0.4
1,551,547	-				-0.7
1,551,554	-				-2.5
1,551,606	+				-0.6
1,551,678	+				-0.6
1,551,705	+		CA265_RS06320	0.11	-0.1
1,551,705	+		CA265_RS06320	0.11	-0.3
1,551,718	+		CA265_RS06320	0.12	-1.3
1,551,719	-		CA265_RS06320	0.12	+0.2
1,551,821	-		CA265_RS06320	0.19	+1.2
1,551,861	+		CA265_RS06320	0.21	-0.1
1,552,048	+		CA265_RS06320	0.33	-0.8
1,552,162	-		CA265_RS06320	0.41	-0.3
1,552,165	-		CA265_RS06320	0.41	-0.9
1,552,357	+		CA265_RS06320	0.53	-0.1
1,552,357	+		CA265_RS06320	0.53	+0.2
1,552,358	-		CA265_RS06320	0.53	+0.6
1,552,360	+		CA265_RS06320	0.54	-0.6
1,552,384	-		CA265_RS06320	0.55	+1.0
1,552,515	+		CA265_RS06320	0.64	-0.6
1,552,516	-		CA265_RS06320	0.64	-1.0
1,552,516	-		CA265_RS06320	0.64	-0.5