Experiment: R2A with Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02565 and CA265_RS02570 are separated by 266 nucleotides CA265_RS02570 and CA265_RS02575 are separated by 227 nucleotides CA265_RS02575 and CA265_RS02580 are separated by 63 nucleotides
CA265_RS02565: CA265_RS02565 - hypothetical protein, at 644,466 to 645,068
_RS02565
CA265_RS02570: CA265_RS02570 - GNAT family N-acetyltransferase, at 645,335 to 645,817
_RS02570
CA265_RS02575: CA265_RS02575 - hypothetical protein, at 646,045 to 646,560
_RS02575
CA265_RS02580: CA265_RS02580 - hypothetical protein, at 646,624 to 647,565
_RS02580
Position (kb) 646
647 Strain fitness (log2 ratio) -2
-1
0
1 at 645.048 kb on + strand at 645.049 kb on - strand at 645.049 kb on - strand at 645.051 kb on + strand at 645.052 kb on - strand at 645.090 kb on + strand at 645.091 kb on - strand at 645.092 kb on + strand at 645.092 kb on + strand at 645.092 kb on + strand at 645.093 kb on - strand at 645.118 kb on + strand at 645.118 kb on + strand at 645.260 kb on + strand at 645.260 kb on + strand at 645.277 kb on - strand at 645.316 kb on - strand at 645.370 kb on + strand at 645.374 kb on - strand at 645.442 kb on + strand, within CA265_RS02570 at 645.442 kb on + strand, within CA265_RS02570 at 645.546 kb on - strand, within CA265_RS02570 at 645.709 kb on + strand, within CA265_RS02570 at 645.710 kb on - strand, within CA265_RS02570 at 645.725 kb on - strand, within CA265_RS02570 at 645.791 kb on - strand at 645.832 kb on + strand at 645.940 kb on + strand at 645.940 kb on + strand at 646.010 kb on + strand at 646.057 kb on + strand at 646.062 kb on + strand at 646.062 kb on + strand at 646.217 kb on + strand, within CA265_RS02575 at 646.283 kb on + strand, within CA265_RS02575 at 646.284 kb on - strand, within CA265_RS02575 at 646.291 kb on - strand, within CA265_RS02575 at 646.305 kb on + strand, within CA265_RS02575 at 646.306 kb on - strand, within CA265_RS02575 at 646.366 kb on - strand, within CA265_RS02575 at 646.522 kb on + strand at 646.523 kb on - strand at 646.523 kb on - strand at 646.564 kb on + strand at 646.565 kb on - strand at 646.617 kb on + strand at 646.660 kb on + strand at 646.743 kb on + strand, within CA265_RS02580 at 646.744 kb on - strand, within CA265_RS02580 at 646.805 kb on - strand, within CA265_RS02580 at 646.805 kb on - strand, within CA265_RS02580 at 646.833 kb on + strand, within CA265_RS02580 at 646.833 kb on + strand, within CA265_RS02580 at 646.873 kb on - strand, within CA265_RS02580 at 646.876 kb on - strand, within CA265_RS02580 at 646.886 kb on + strand, within CA265_RS02580 at 646.941 kb on - strand, within CA265_RS02580 at 647.019 kb on + strand, within CA265_RS02580 at 647.116 kb on - strand, within CA265_RS02580 at 647.120 kb on + strand, within CA265_RS02580 at 647.125 kb on - strand, within CA265_RS02580 at 647.138 kb on + strand, within CA265_RS02580 at 647.138 kb on + strand, within CA265_RS02580 at 647.139 kb on - strand, within CA265_RS02580 at 647.142 kb on + strand, within CA265_RS02580 at 647.143 kb on - strand, within CA265_RS02580 at 647.143 kb on - strand, within CA265_RS02580 at 647.210 kb on + strand, within CA265_RS02580 at 647.211 kb on - strand, within CA265_RS02580 at 647.211 kb on - strand, within CA265_RS02580 at 647.211 kb on - strand, within CA265_RS02580 at 647.376 kb on - strand, within CA265_RS02580 at 647.393 kb on - strand, within CA265_RS02580 at 647.497 kb on - strand at 647.557 kb on + strand at 647.557 kb on + strand at 647.558 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloramphenicol 0.001 mg/ml remove 645,048 + +0.7 645,049 - -1.1 645,049 - -1.6 645,051 + -0.5 645,052 - +0.0 645,090 + -0.1 645,091 - -0.8 645,092 + -0.1 645,092 + -0.4 645,092 + +0.1 645,093 - -0.2 645,118 + +0.3 645,118 + -0.3 645,260 + -0.5 645,260 + -0.3 645,277 - -0.4 645,316 - -0.3 645,370 + +0.1 645,374 - -0.5 645,442 + CA265_RS02570 0.22 +0.2 645,442 + CA265_RS02570 0.22 -0.7 645,546 - CA265_RS02570 0.44 -0.5 645,709 + CA265_RS02570 0.77 +0.3 645,710 - CA265_RS02570 0.78 -0.0 645,725 - CA265_RS02570 0.81 -1.7 645,791 - -2.7 645,832 + -0.3 645,940 + +1.3 645,940 + +0.2 646,010 + +0.6 646,057 + +1.2 646,062 + -0.2 646,062 + +0.7 646,217 + CA265_RS02575 0.33 +0.5 646,283 + CA265_RS02575 0.46 -0.5 646,284 - CA265_RS02575 0.46 +0.2 646,291 - CA265_RS02575 0.48 -1.6 646,305 + CA265_RS02575 0.50 -1.3 646,306 - CA265_RS02575 0.51 -0.4 646,366 - CA265_RS02575 0.62 -2.2 646,522 + +0.0 646,523 - +0.5 646,523 - -0.8 646,564 + -1.2 646,565 - +0.9 646,617 + -0.3 646,660 + +0.2 646,743 + CA265_RS02580 0.13 -1.1 646,744 - CA265_RS02580 0.13 -0.5 646,805 - CA265_RS02580 0.19 +0.5 646,805 - CA265_RS02580 0.19 -0.2 646,833 + CA265_RS02580 0.22 -0.1 646,833 + CA265_RS02580 0.22 +0.0 646,873 - CA265_RS02580 0.26 -0.0 646,876 - CA265_RS02580 0.27 +0.1 646,886 + CA265_RS02580 0.28 -0.6 646,941 - CA265_RS02580 0.34 -1.7 647,019 + CA265_RS02580 0.42 -1.1 647,116 - CA265_RS02580 0.52 -0.5 647,120 + CA265_RS02580 0.53 -1.4 647,125 - CA265_RS02580 0.53 -0.3 647,138 + CA265_RS02580 0.55 -1.1 647,138 + CA265_RS02580 0.55 -0.5 647,139 - CA265_RS02580 0.55 -1.1 647,142 + CA265_RS02580 0.55 -0.7 647,143 - CA265_RS02580 0.55 -0.4 647,143 - CA265_RS02580 0.55 -0.1 647,210 + CA265_RS02580 0.62 -1.6 647,211 - CA265_RS02580 0.62 +0.8 647,211 - CA265_RS02580 0.62 -0.4 647,211 - CA265_RS02580 0.62 +0.2 647,376 - CA265_RS02580 0.80 +0.1 647,393 - CA265_RS02580 0.82 -0.4 647,497 - -0.1 647,557 + -0.6 647,557 + +0.0 647,558 - -0.2
Or see this region's nucleotide sequence