Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4427 and Ac3H11_4428 overlap by 4 nucleotides Ac3H11_4428 and Ac3H11_4429 are separated by 94 nucleotides Ac3H11_4429 and Ac3H11_4430 are separated by 213 nucleotides Ac3H11_4430 and Ac3H11_4431 are separated by 19 nucleotides
Ac3H11_4427 - Probable transmembrane protein, at 4,120 to 5,073
_4427
Ac3H11_4428 - Molybdopterin-binding protein, at 5,070 to 5,891
_4428
Ac3H11_4429 - Glutamine synthetase type I (EC 6.3.1.2), at 5,986 to 7,479
_4429
Ac3H11_4430 - FIG01198927: hypothetical protein, at 7,693 to 8,205
_4430
Ac3H11_4431 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 8,225 to 9,313
_4431
Position (kb) 5
6
7
8 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 5.034 kb on + strand at 5.034 kb on + strand at 5.035 kb on - strand at 5.187 kb on + strand, within Ac3H11_4428 at 5.187 kb on + strand, within Ac3H11_4428 at 5.187 kb on + strand, within Ac3H11_4428 at 5.196 kb on + strand, within Ac3H11_4428 at 5.196 kb on + strand, within Ac3H11_4428 at 5.196 kb on + strand, within Ac3H11_4428 at 5.196 kb on + strand, within Ac3H11_4428 at 5.197 kb on - strand, within Ac3H11_4428 at 5.197 kb on - strand, within Ac3H11_4428 at 5.197 kb on - strand, within Ac3H11_4428 at 5.392 kb on + strand, within Ac3H11_4428 at 5.392 kb on + strand, within Ac3H11_4428 at 5.392 kb on + strand, within Ac3H11_4428 at 5.392 kb on + strand, within Ac3H11_4428 at 5.393 kb on - strand, within Ac3H11_4428 at 5.415 kb on + strand, within Ac3H11_4428 at 5.415 kb on + strand, within Ac3H11_4428 at 5.416 kb on - strand, within Ac3H11_4428 at 5.496 kb on + strand, within Ac3H11_4428 at 5.496 kb on + strand, within Ac3H11_4428 at 5.496 kb on + strand, within Ac3H11_4428 at 5.496 kb on + strand, within Ac3H11_4428 at 5.496 kb on + strand, within Ac3H11_4428 at 5.496 kb on + strand, within Ac3H11_4428 at 5.496 kb on + strand, within Ac3H11_4428 at 5.496 kb on + strand, within Ac3H11_4428 at 5.496 kb on + strand, within Ac3H11_4428 at 5.497 kb on - strand, within Ac3H11_4428 at 5.497 kb on - strand, within Ac3H11_4428 at 5.497 kb on - strand, within Ac3H11_4428 at 5.497 kb on - strand, within Ac3H11_4428 at 5.497 kb on - strand, within Ac3H11_4428 at 5.497 kb on - strand, within Ac3H11_4428 at 5.610 kb on + strand, within Ac3H11_4428 at 5.611 kb on - strand, within Ac3H11_4428 at 5.624 kb on + strand, within Ac3H11_4428 at 5.661 kb on + strand, within Ac3H11_4428 at 5.662 kb on - strand, within Ac3H11_4428 at 5.662 kb on - strand, within Ac3H11_4428 at 5.763 kb on + strand, within Ac3H11_4428 at 5.763 kb on + strand, within Ac3H11_4428 at 5.763 kb on + strand, within Ac3H11_4428 at 5.763 kb on + strand, within Ac3H11_4428 at 5.764 kb on - strand, within Ac3H11_4428 at 5.764 kb on - strand, within Ac3H11_4428 at 5.774 kb on + strand, within Ac3H11_4428 at 5.775 kb on - strand, within Ac3H11_4428 at 5.775 kb on - strand, within Ac3H11_4428 at 5.775 kb on - strand, within Ac3H11_4428 at 5.775 kb on - strand, within Ac3H11_4428 at 5.775 kb on - strand, within Ac3H11_4428 at 5.775 kb on - strand, within Ac3H11_4428 at 5.775 kb on - strand, within Ac3H11_4428 at 5.956 kb on + strand at 5.956 kb on + strand at 5.957 kb on - strand at 5.976 kb on + strand at 5.976 kb on + strand at 5.976 kb on + strand at 5.976 kb on + strand at 5.977 kb on - strand at 5.977 kb on - strand at 5.977 kb on - strand at 5.984 kb on + strand at 6.015 kb on + strand at 6.015 kb on + strand at 7.477 kb on + strand at 7.477 kb on + strand at 7.478 kb on - strand at 7.478 kb on - strand at 7.478 kb on - strand at 7.478 kb on - strand at 7.478 kb on - strand at 7.598 kb on + strand at 7.599 kb on - strand at 7.654 kb on + strand at 7.654 kb on + strand at 7.655 kb on - strand at 7.765 kb on + strand, within Ac3H11_4430 at 7.766 kb on - strand, within Ac3H11_4430 at 7.783 kb on + strand, within Ac3H11_4430 at 7.783 kb on + strand, within Ac3H11_4430 at 7.783 kb on + strand, within Ac3H11_4430 at 7.783 kb on + strand, within Ac3H11_4430 at 7.784 kb on - strand, within Ac3H11_4430 at 7.784 kb on - strand, within Ac3H11_4430 at 7.784 kb on - strand, within Ac3H11_4430 at 7.784 kb on - strand, within Ac3H11_4430 at 7.784 kb on - strand, within Ac3H11_4430 at 7.784 kb on - strand, within Ac3H11_4430 at 8.047 kb on + strand, within Ac3H11_4430 at 8.047 kb on + strand, within Ac3H11_4430 at 8.047 kb on + strand, within Ac3H11_4430 at 8.047 kb on + strand, within Ac3H11_4430 at 8.048 kb on - strand, within Ac3H11_4430 at 8.048 kb on - strand, within Ac3H11_4430 at 8.048 kb on - strand, within Ac3H11_4430 at 8.048 kb on - strand, within Ac3H11_4430 at 8.048 kb on - strand, within Ac3H11_4430 at 8.101 kb on + strand, within Ac3H11_4430 at 8.101 kb on + strand, within Ac3H11_4430 at 8.102 kb on - strand, within Ac3H11_4430 at 8.203 kb on + strand at 8.203 kb on + strand at 8.203 kb on + strand at 8.203 kb on + strand at 8.203 kb on + strand at 8.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 5,034 + -1.3 5,034 + +1.2 5,035 - +0.7 5,187 + Ac3H11_4428 0.14 +1.4 5,187 + Ac3H11_4428 0.14 +1.0 5,187 + Ac3H11_4428 0.14 +0.7 5,196 + Ac3H11_4428 0.15 +0.4 5,196 + Ac3H11_4428 0.15 -1.7 5,196 + Ac3H11_4428 0.15 -2.7 5,196 + Ac3H11_4428 0.15 +0.6 5,197 - Ac3H11_4428 0.15 +0.5 5,197 - Ac3H11_4428 0.15 +0.9 5,197 - Ac3H11_4428 0.15 -0.1 5,392 + Ac3H11_4428 0.39 +0.5 5,392 + Ac3H11_4428 0.39 +0.4 5,392 + Ac3H11_4428 0.39 +1.9 5,392 + Ac3H11_4428 0.39 +7.0 5,393 - Ac3H11_4428 0.39 +0.4 5,415 + Ac3H11_4428 0.42 +0.8 5,415 + Ac3H11_4428 0.42 +0.6 5,416 - Ac3H11_4428 0.42 +2.5 5,496 + Ac3H11_4428 0.52 -0.2 5,496 + Ac3H11_4428 0.52 +0.8 5,496 + Ac3H11_4428 0.52 +1.4 5,496 + Ac3H11_4428 0.52 +0.6 5,496 + Ac3H11_4428 0.52 +0.6 5,496 + Ac3H11_4428 0.52 +0.9 5,496 + Ac3H11_4428 0.52 +0.4 5,496 + Ac3H11_4428 0.52 +0.1 5,496 + Ac3H11_4428 0.52 -0.3 5,497 - Ac3H11_4428 0.52 -0.1 5,497 - Ac3H11_4428 0.52 +0.3 5,497 - Ac3H11_4428 0.52 -0.2 5,497 - Ac3H11_4428 0.52 +0.6 5,497 - Ac3H11_4428 0.52 +1.0 5,497 - Ac3H11_4428 0.52 +0.8 5,610 + Ac3H11_4428 0.66 +0.0 5,611 - Ac3H11_4428 0.66 -0.4 5,624 + Ac3H11_4428 0.67 -0.0 5,661 + Ac3H11_4428 0.72 +0.2 5,662 - Ac3H11_4428 0.72 +0.6 5,662 - Ac3H11_4428 0.72 -0.9 5,763 + Ac3H11_4428 0.84 +1.1 5,763 + Ac3H11_4428 0.84 +1.6 5,763 + Ac3H11_4428 0.84 -0.1 5,763 + Ac3H11_4428 0.84 +0.4 5,764 - Ac3H11_4428 0.84 -0.5 5,764 - Ac3H11_4428 0.84 +1.0 5,774 + Ac3H11_4428 0.86 +1.4 5,775 - Ac3H11_4428 0.86 -0.8 5,775 - Ac3H11_4428 0.86 +0.7 5,775 - Ac3H11_4428 0.86 +0.1 5,775 - Ac3H11_4428 0.86 +1.4 5,775 - Ac3H11_4428 0.86 -0.9 5,775 - Ac3H11_4428 0.86 +0.1 5,775 - Ac3H11_4428 0.86 +0.8 5,956 + +0.4 5,956 + +0.7 5,957 - -1.7 5,976 + +1.0 5,976 + +0.8 5,976 + +0.4 5,976 + +0.6 5,977 - -2.2 5,977 - -4.0 5,977 - -2.3 5,984 + +1.3 6,015 + -0.3 6,015 + -0.3 7,477 + -1.0 7,477 + -0.6 7,478 - +0.3 7,478 - +0.2 7,478 - +0.6 7,478 - +0.3 7,478 - -0.9 7,598 + +1.2 7,599 - +0.5 7,654 + +0.6 7,654 + +0.9 7,655 - +0.6 7,765 + Ac3H11_4430 0.14 -0.0 7,766 - Ac3H11_4430 0.14 -0.4 7,783 + Ac3H11_4430 0.18 -1.2 7,783 + Ac3H11_4430 0.18 +0.7 7,783 + Ac3H11_4430 0.18 -1.1 7,783 + Ac3H11_4430 0.18 -0.3 7,784 - Ac3H11_4430 0.18 +0.6 7,784 - Ac3H11_4430 0.18 +0.1 7,784 - Ac3H11_4430 0.18 -0.7 7,784 - Ac3H11_4430 0.18 -0.5 7,784 - Ac3H11_4430 0.18 -0.1 7,784 - Ac3H11_4430 0.18 -0.2 8,047 + Ac3H11_4430 0.69 +0.8 8,047 + Ac3H11_4430 0.69 +0.2 8,047 + Ac3H11_4430 0.69 +0.4 8,047 + Ac3H11_4430 0.69 -1.2 8,048 - Ac3H11_4430 0.69 -0.3 8,048 - Ac3H11_4430 0.69 -0.4 8,048 - Ac3H11_4430 0.69 +1.0 8,048 - Ac3H11_4430 0.69 -0.8 8,048 - Ac3H11_4430 0.69 -0.1 8,101 + Ac3H11_4430 0.80 +0.2 8,101 + Ac3H11_4430 0.80 +0.2 8,102 - Ac3H11_4430 0.80 +0.3 8,203 + +1.3 8,203 + -2.2 8,203 + -1.0 8,203 + -0.1 8,203 + +1.2 8,204 - +1.1
Or see this region's nucleotide sequence