Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3453

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3452 and Ac3H11_3648 are separated by 50 nucleotidesAc3H11_3648 and Ac3H11_3453 are separated by 30 nucleotidesAc3H11_3453 and Ac3H11_3454 are separated by 58 nucleotidesAc3H11_3454 and Ac3H11_3455 are separated by 41 nucleotides Ac3H11_3452 - Ribose-phosphate pyrophosphokinase (EC 2.7.6.1), at 1,811 to 2,785 _3452 Ac3H11_3648 - tRNA-Gln-TTG, at 2,836 to 2,909 _3648 Ac3H11_3453 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 2,940 to 3,779 _3453 Ac3H11_3454 - Outer membrane lipoprotein LolB, at 3,838 to 4,326 _3454 Ac3H11_3455 - FOG: TPR repeat, at 4,368 to 6,128 _3455 Position (kb) 2 3 4Strain fitness (log2 ratio) -1 0 1at 2.830 kb on - strandat 2.830 kb on - strandat 2.830 kb on - strandat 2.830 kb on - strandat 2.830 kb on - strandat 3.819 kb on + strandat 3.820 kb on - strandat 3.820 kb on - strandat 3.820 kb on - strandat 4.506 kb on + strandat 4.507 kb on - strandat 4.507 kb on - strandat 4.507 kb on - strandat 4.507 kb on - strandat 4.513 kb on - strandat 4.513 kb on - strandat 4.531 kb on + strandat 4.531 kb on + strandat 4.531 kb on + strandat 4.532 kb on - strandat 4.532 kb on - strandat 4.532 kb on - strandat 4.532 kb on - strandat 4.532 kb on - strandat 4.532 kb on - strandat 4.694 kb on - strand, within Ac3H11_3455at 4.698 kb on + strand, within Ac3H11_3455at 4.699 kb on - strand, within Ac3H11_3455at 4.699 kb on - strand, within Ac3H11_3455at 4.699 kb on - strand, within Ac3H11_3455at 4.709 kb on - strand, within Ac3H11_3455at 4.709 kb on - strand, within Ac3H11_3455at 4.709 kb on - strand, within Ac3H11_3455at 4.721 kb on - strand, within Ac3H11_3455at 4.721 kb on - strand, within Ac3H11_3455

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
2,830 - +0.1
2,830 - +0.3
2,830 - +0.6
2,830 - -0.4
2,830 - -1.7
3,819 + -1.1
3,820 - -0.1
3,820 - -0.6
3,820 - +0.8
4,506 + +0.9
4,507 - -0.6
4,507 - +0.3
4,507 - -0.4
4,507 - +0.1
4,513 - -0.7
4,513 - -1.1
4,531 + +1.7
4,531 + +1.2
4,531 + -1.6
4,532 - -0.2
4,532 - -0.2
4,532 - +0.0
4,532 - -0.5
4,532 - -0.5
4,532 - -0.8
4,694 - Ac3H11_3455 0.19 -1.1
4,698 + Ac3H11_3455 0.19 +0.5
4,699 - Ac3H11_3455 0.19 -1.0
4,699 - Ac3H11_3455 0.19 -1.6
4,699 - Ac3H11_3455 0.19 -1.6
4,709 - Ac3H11_3455 0.19 -1.5
4,709 - Ac3H11_3455 0.19 -0.3
4,709 - Ac3H11_3455 0.19 -0.5
4,721 - Ac3H11_3455 0.20 +0.2
4,721 - Ac3H11_3455 0.20 +0.1

Or see this region's nucleotide sequence