Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2776

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2774 and Ac3H11_2775 are separated by 30 nucleotidesAc3H11_2775 and Ac3H11_2776 are separated by 4 nucleotidesAc3H11_2776 and Ac3H11_2777 are separated by 27 nucleotides Ac3H11_2774 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 1,075,083 to 1,075,913 _2774 Ac3H11_2775 - Enoyl-CoA hydratase (EC 4.2.1.17), at 1,075,944 to 1,076,783 _2775 Ac3H11_2776 - Lactoylglutathione lyase and related lyases, at 1,076,788 to 1,077,753 _2776 Ac3H11_2777 - FIG005548: transport protein, at 1,077,781 to 1,080,243 _2777 Position (kb) 1076 1077 1078Strain fitness (log2 ratio) -3 -2 -1 0 1at 1076.411 kb on - strand, within Ac3H11_2775at 1076.792 kb on + strandat 1076.954 kb on + strand, within Ac3H11_2776at 1076.954 kb on + strand, within Ac3H11_2776at 1076.954 kb on + strand, within Ac3H11_2776at 1076.954 kb on + strand, within Ac3H11_2776at 1076.954 kb on + strand, within Ac3H11_2776at 1076.955 kb on - strand, within Ac3H11_2776at 1076.955 kb on - strand, within Ac3H11_2776at 1076.955 kb on - strand, within Ac3H11_2776at 1076.955 kb on - strand, within Ac3H11_2776at 1076.958 kb on - strand, within Ac3H11_2776at 1077.494 kb on + strand, within Ac3H11_2776at 1077.495 kb on - strand, within Ac3H11_2776at 1077.626 kb on + strand, within Ac3H11_2776at 1077.626 kb on + strand, within Ac3H11_2776at 1077.626 kb on + strand, within Ac3H11_2776at 1077.626 kb on + strand, within Ac3H11_2776at 1077.627 kb on - strand, within Ac3H11_2776at 1077.627 kb on - strand, within Ac3H11_2776at 1078.082 kb on + strand, within Ac3H11_2777at 1078.082 kb on + strand, within Ac3H11_2777at 1078.271 kb on + strand, within Ac3H11_2777at 1078.271 kb on + strand, within Ac3H11_2777at 1078.272 kb on - strand, within Ac3H11_2777at 1078.272 kb on - strand, within Ac3H11_2777at 1078.283 kb on + strand, within Ac3H11_2777at 1078.460 kb on + strand, within Ac3H11_2777at 1078.492 kb on - strand, within Ac3H11_2777

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,076,411 - Ac3H11_2775 0.56 +0.4
1,076,792 + +0.1
1,076,954 + Ac3H11_2776 0.17 -1.2
1,076,954 + Ac3H11_2776 0.17 +0.3
1,076,954 + Ac3H11_2776 0.17 -0.4
1,076,954 + Ac3H11_2776 0.17 -0.1
1,076,954 + Ac3H11_2776 0.17 -0.1
1,076,955 - Ac3H11_2776 0.17 +0.1
1,076,955 - Ac3H11_2776 0.17 -0.2
1,076,955 - Ac3H11_2776 0.17 -0.2
1,076,955 - Ac3H11_2776 0.17 -0.7
1,076,958 - Ac3H11_2776 0.18 -0.2
1,077,494 + Ac3H11_2776 0.73 -1.0
1,077,495 - Ac3H11_2776 0.73 +0.7
1,077,626 + Ac3H11_2776 0.87 -0.3
1,077,626 + Ac3H11_2776 0.87 +0.3
1,077,626 + Ac3H11_2776 0.87 -0.4
1,077,626 + Ac3H11_2776 0.87 -0.1
1,077,627 - Ac3H11_2776 0.87 -1.0
1,077,627 - Ac3H11_2776 0.87 +0.1
1,078,082 + Ac3H11_2777 0.12 -0.1
1,078,082 + Ac3H11_2777 0.12 +0.6
1,078,271 + Ac3H11_2777 0.20 -3.4
1,078,271 + Ac3H11_2777 0.20 -0.1
1,078,272 - Ac3H11_2777 0.20 -0.0
1,078,272 - Ac3H11_2777 0.20 +0.3
1,078,283 + Ac3H11_2777 0.20 -0.4
1,078,460 + Ac3H11_2777 0.28 -0.1
1,078,492 - Ac3H11_2777 0.29 -0.4

Or see this region's nucleotide sequence