Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2365

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2364 and Ac3H11_2365 are separated by 159 nucleotidesAc3H11_2365 and Ac3H11_2366 are separated by 8 nucleotides Ac3H11_2364 - Ferrichrome-iron receptor, at 621,944 to 624,139 _2364 Ac3H11_2365 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 624,299 to 625,912 _2365 Ac3H11_2366 - ABC transporter, permease protein, at 625,921 to 626,877 _2366 Position (kb) 624 625 626Strain fitness (log2 ratio) -2 -1 0 1 2at 623.342 kb on + strand, within Ac3H11_2364at 623.342 kb on + strand, within Ac3H11_2364at 623.342 kb on + strand, within Ac3H11_2364at 623.342 kb on + strand, within Ac3H11_2364at 623.342 kb on + strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.453 kb on + strand, within Ac3H11_2364at 623.453 kb on + strand, within Ac3H11_2364at 623.453 kb on + strand, within Ac3H11_2364at 623.453 kb on + strand, within Ac3H11_2364at 623.453 kb on + strand, within Ac3H11_2364at 623.454 kb on - strand, within Ac3H11_2364at 623.454 kb on - strand, within Ac3H11_2364at 623.605 kb on + strand, within Ac3H11_2364at 623.605 kb on + strand, within Ac3H11_2364at 623.605 kb on + strand, within Ac3H11_2364at 623.605 kb on + strand, within Ac3H11_2364at 623.606 kb on - strand, within Ac3H11_2364at 623.606 kb on - strand, within Ac3H11_2364at 623.606 kb on - strand, within Ac3H11_2364at 623.838 kb on - strand, within Ac3H11_2364at 623.838 kb on - strand, within Ac3H11_2364at 623.838 kb on - strand, within Ac3H11_2364at 623.868 kb on - strand, within Ac3H11_2364at 623.899 kb on + strand, within Ac3H11_2364at 623.900 kb on - strand, within Ac3H11_2364at 623.900 kb on - strand, within Ac3H11_2364at 623.969 kb on + strandat 623.969 kb on + strandat 623.969 kb on + strandat 623.969 kb on + strandat 623.969 kb on + strandat 623.970 kb on - strandat 623.970 kb on - strandat 623.970 kb on - strandat 623.970 kb on - strandat 623.993 kb on + strandat 624.059 kb on + strandat 624.059 kb on + strandat 624.059 kb on + strandat 624.059 kb on + strandat 624.059 kb on + strandat 624.060 kb on - strandat 624.060 kb on - strandat 624.071 kb on + strandat 624.072 kb on - strandat 624.072 kb on - strandat 624.489 kb on - strand, within Ac3H11_2365at 624.836 kb on + strand, within Ac3H11_2365at 624.836 kb on + strand, within Ac3H11_2365at 624.837 kb on - strand, within Ac3H11_2365at 624.837 kb on - strand, within Ac3H11_2365at 624.939 kb on - strand, within Ac3H11_2365at 624.939 kb on - strand, within Ac3H11_2365at 624.975 kb on - strand, within Ac3H11_2365at 625.040 kb on + strand, within Ac3H11_2365at 625.041 kb on - strand, within Ac3H11_2365at 625.598 kb on + strand, within Ac3H11_2365at 625.599 kb on - strand, within Ac3H11_2365at 625.599 kb on - strand, within Ac3H11_2365at 625.811 kb on + strandat 625.812 kb on - strandat 625.877 kb on + strandat 625.878 kb on - strandat 626.065 kb on + strand, within Ac3H11_2366at 626.066 kb on - strand, within Ac3H11_2366at 626.066 kb on - strand, within Ac3H11_2366at 626.520 kb on - strand, within Ac3H11_2366at 626.549 kb on + strand, within Ac3H11_2366at 626.648 kb on - strand, within Ac3H11_2366at 626.648 kb on - strand, within Ac3H11_2366at 626.648 kb on - strand, within Ac3H11_2366at 626.648 kb on - strand, within Ac3H11_2366at 626.804 kb on + strandat 626.804 kb on + strandat 626.805 kb on - strandat 626.805 kb on - strandat 626.805 kb on - strandat 626.805 kb on - strandat 626.822 kb on + strandat 626.822 kb on + strandat 626.822 kb on + strandat 626.822 kb on + strandat 626.822 kb on + strandat 626.823 kb on - strandat 626.857 kb on - strandat 626.867 kb on + strandat 626.867 kb on + strandat 626.867 kb on + strandat 626.868 kb on - strandat 626.868 kb on - strandat 626.868 kb on - strandat 626.884 kb on + strandat 626.885 kb on - strandat 626.885 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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623,342 + Ac3H11_2364 0.64 -0.1
623,342 + Ac3H11_2364 0.64 +1.0
623,342 + Ac3H11_2364 0.64 +0.6
623,342 + Ac3H11_2364 0.64 -0.0
623,342 + Ac3H11_2364 0.64 +0.8
623,343 - Ac3H11_2364 0.64 -0.4
623,343 - Ac3H11_2364 0.64 +0.8
623,343 - Ac3H11_2364 0.64 -0.5
623,343 - Ac3H11_2364 0.64 +0.6
623,343 - Ac3H11_2364 0.64 -0.7
623,343 - Ac3H11_2364 0.64 -0.7
623,343 - Ac3H11_2364 0.64 +0.2
623,343 - Ac3H11_2364 0.64 -0.1
623,343 - Ac3H11_2364 0.64 -0.2
623,453 + Ac3H11_2364 0.69 +0.0
623,453 + Ac3H11_2364 0.69 +0.5
623,453 + Ac3H11_2364 0.69 +0.0
623,453 + Ac3H11_2364 0.69 -1.6
623,453 + Ac3H11_2364 0.69 -0.3
623,454 - Ac3H11_2364 0.69 -1.5
623,454 - Ac3H11_2364 0.69 +0.4
623,605 + Ac3H11_2364 0.76 +1.0
623,605 + Ac3H11_2364 0.76 -0.9
623,605 + Ac3H11_2364 0.76 +0.3
623,605 + Ac3H11_2364 0.76 -0.3
623,606 - Ac3H11_2364 0.76 +0.4
623,606 - Ac3H11_2364 0.76 -0.2
623,606 - Ac3H11_2364 0.76 -0.7
623,838 - Ac3H11_2364 0.86 +0.4
623,838 - Ac3H11_2364 0.86 -0.9
623,838 - Ac3H11_2364 0.86 -0.3
623,868 - Ac3H11_2364 0.88 +0.6
623,899 + Ac3H11_2364 0.89 -0.4
623,900 - Ac3H11_2364 0.89 -0.1
623,900 - Ac3H11_2364 0.89 +0.7
623,969 + -0.1
623,969 + -0.8
623,969 + -0.3
623,969 + +0.4
623,969 + -0.9
623,970 - -0.1
623,970 - -0.7
623,970 - +0.3
623,970 - -0.3
623,993 + -0.0
624,059 + +0.4
624,059 + -0.4
624,059 + -0.2
624,059 + +0.1
624,059 + -0.4
624,060 - +0.0
624,060 - -0.2
624,071 + -0.6
624,072 - -0.8
624,072 - -0.6
624,489 - Ac3H11_2365 0.12 +0.4
624,836 + Ac3H11_2365 0.33 -0.8
624,836 + Ac3H11_2365 0.33 +0.2
624,837 - Ac3H11_2365 0.33 +0.2
624,837 - Ac3H11_2365 0.33 -0.9
624,939 - Ac3H11_2365 0.40 -0.2
624,939 - Ac3H11_2365 0.40 +0.2
624,975 - Ac3H11_2365 0.42 +0.0
625,040 + Ac3H11_2365 0.46 -1.1
625,041 - Ac3H11_2365 0.46 -2.4
625,598 + Ac3H11_2365 0.80 -0.5
625,599 - Ac3H11_2365 0.81 -0.5
625,599 - Ac3H11_2365 0.81 -0.8
625,811 + +0.2
625,812 - -0.3
625,877 + -0.0
625,878 - +0.2
626,065 + Ac3H11_2366 0.15 -0.5
626,066 - Ac3H11_2366 0.15 -0.1
626,066 - Ac3H11_2366 0.15 -1.3
626,520 - Ac3H11_2366 0.63 +0.1
626,549 + Ac3H11_2366 0.66 -0.5
626,648 - Ac3H11_2366 0.76 -0.6
626,648 - Ac3H11_2366 0.76 +0.3
626,648 - Ac3H11_2366 0.76 +0.8
626,648 - Ac3H11_2366 0.76 -1.3
626,804 + -0.5
626,804 + -0.8
626,805 - +0.7
626,805 - +0.6
626,805 - -0.1
626,805 - -0.3
626,822 + -0.8
626,822 + -0.4
626,822 + +0.5
626,822 + +0.3
626,822 + -2.0
626,823 - +2.1
626,857 - -0.5
626,867 + +0.4
626,867 + -0.9
626,867 + -0.3
626,868 - +0.0
626,868 - -0.0
626,868 - -1.4
626,884 + -0.2
626,885 - +0.2
626,885 - +0.2

Or see this region's nucleotide sequence