Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_212 and Ac3H11_213 are separated by 31 nucleotides Ac3H11_213 and Ac3H11_214 are separated by 229 nucleotides
Ac3H11_212 - Gentisate 1,2-dioxygenase (EC 1.13.11.4), at 24,198 to 25,322
_212
Ac3H11_213 - Fumarylacetoacetate hydrolase family protein, at 25,354 to 26,070
_213
Ac3H11_214 - Ferredoxin reductase, at 26,300 to 27,595
_214
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2 at 24.763 kb on + strand, within Ac3H11_212 at 24.763 kb on - strand, within Ac3H11_212 at 24.764 kb on - strand, within Ac3H11_212 at 24.766 kb on + strand, within Ac3H11_212 at 24.766 kb on + strand, within Ac3H11_212 at 24.767 kb on - strand, within Ac3H11_212 at 24.986 kb on - strand, within Ac3H11_212 at 25.232 kb on - strand at 25.232 kb on - strand at 25.356 kb on - strand at 25.438 kb on + strand, within Ac3H11_213 at 25.487 kb on + strand, within Ac3H11_213 at 25.487 kb on + strand, within Ac3H11_213 at 25.488 kb on - strand, within Ac3H11_213 at 25.488 kb on - strand, within Ac3H11_213 at 25.488 kb on - strand, within Ac3H11_213 at 25.733 kb on + strand, within Ac3H11_213 at 25.734 kb on - strand, within Ac3H11_213 at 25.739 kb on + strand, within Ac3H11_213 at 25.739 kb on + strand, within Ac3H11_213 at 25.739 kb on + strand, within Ac3H11_213 at 25.739 kb on + strand, within Ac3H11_213 at 25.740 kb on - strand, within Ac3H11_213 at 25.740 kb on - strand, within Ac3H11_213 at 25.740 kb on - strand, within Ac3H11_213 at 25.740 kb on - strand, within Ac3H11_213 at 25.740 kb on - strand, within Ac3H11_213 at 25.821 kb on - strand, within Ac3H11_213 at 25.892 kb on + strand, within Ac3H11_213 at 25.952 kb on + strand, within Ac3H11_213 at 25.953 kb on - strand, within Ac3H11_213 at 26.022 kb on - strand at 26.045 kb on + strand at 26.045 kb on + strand at 26.088 kb on + strand at 26.103 kb on + strand at 26.228 kb on + strand at 26.228 kb on + strand at 26.229 kb on - strand at 26.229 kb on - strand at 26.442 kb on + strand, within Ac3H11_214 at 26.442 kb on + strand, within Ac3H11_214 at 26.443 kb on - strand, within Ac3H11_214 at 26.515 kb on - strand, within Ac3H11_214 at 26.864 kb on - strand, within Ac3H11_214 at 26.962 kb on - strand, within Ac3H11_214
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 24,763 + Ac3H11_212 0.50 +0.3 24,763 - Ac3H11_212 0.50 +0.8 24,764 - Ac3H11_212 0.50 -0.1 24,766 + Ac3H11_212 0.50 +0.2 24,766 + Ac3H11_212 0.50 -0.6 24,767 - Ac3H11_212 0.51 +0.6 24,986 - Ac3H11_212 0.70 -0.5 25,232 - -0.8 25,232 - +0.3 25,356 - +1.0 25,438 + Ac3H11_213 0.12 +0.4 25,487 + Ac3H11_213 0.19 -0.4 25,487 + Ac3H11_213 0.19 +0.6 25,488 - Ac3H11_213 0.19 +0.0 25,488 - Ac3H11_213 0.19 +0.2 25,488 - Ac3H11_213 0.19 -1.3 25,733 + Ac3H11_213 0.53 -0.5 25,734 - Ac3H11_213 0.53 -0.3 25,739 + Ac3H11_213 0.54 -0.5 25,739 + Ac3H11_213 0.54 +0.5 25,739 + Ac3H11_213 0.54 -0.1 25,739 + Ac3H11_213 0.54 +0.5 25,740 - Ac3H11_213 0.54 +0.6 25,740 - Ac3H11_213 0.54 +1.9 25,740 - Ac3H11_213 0.54 +0.8 25,740 - Ac3H11_213 0.54 -0.5 25,740 - Ac3H11_213 0.54 -0.1 25,821 - Ac3H11_213 0.65 +0.9 25,892 + Ac3H11_213 0.75 -0.4 25,952 + Ac3H11_213 0.83 -2.0 25,953 - Ac3H11_213 0.84 +0.6 26,022 - -0.3 26,045 + +0.3 26,045 + +2.2 26,088 + -0.6 26,103 + +0.7 26,228 + +0.3 26,228 + +0.3 26,229 - -0.6 26,229 - +0.1 26,442 + Ac3H11_214 0.11 +0.2 26,442 + Ac3H11_214 0.11 +0.7 26,443 - Ac3H11_214 0.11 -0.1 26,515 - Ac3H11_214 0.17 +0.3 26,864 - Ac3H11_214 0.44 +0.2 26,962 - Ac3H11_214 0.51 -0.3
Or see this region's nucleotide sequence