Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23305

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23300 and AZOBR_RS23305 are separated by 200 nucleotidesAZOBR_RS23305 and AZOBR_RS23310 are separated by 35 nucleotides AZOBR_RS23300: AZOBR_RS23300 - dihydrodipicolinate synthase, at 253,271 to 254,185 _RS23300 AZOBR_RS23305: AZOBR_RS23305 - hypothetical protein, at 254,386 to 255,366 _RS23305 AZOBR_RS23310: AZOBR_RS23310 - hypothetical protein, at 255,402 to 256,379 _RS23310 Position (kb) 254 255 256Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 253.603 kb on - strand, within AZOBR_RS23300at 253.755 kb on + strand, within AZOBR_RS23300at 253.755 kb on + strand, within AZOBR_RS23300at 253.776 kb on + strand, within AZOBR_RS23300at 253.777 kb on - strand, within AZOBR_RS23300at 253.777 kb on - strand, within AZOBR_RS23300at 253.777 kb on - strand, within AZOBR_RS23300at 253.777 kb on - strand, within AZOBR_RS23300at 253.777 kb on - strand, within AZOBR_RS23300at 253.857 kb on + strand, within AZOBR_RS23300at 253.857 kb on + strand, within AZOBR_RS23300at 253.857 kb on + strand, within AZOBR_RS23300at 254.531 kb on - strand, within AZOBR_RS23305at 254.531 kb on - strand, within AZOBR_RS23305at 254.632 kb on + strand, within AZOBR_RS23305at 254.632 kb on + strand, within AZOBR_RS23305at 254.632 kb on + strand, within AZOBR_RS23305at 254.632 kb on + strand, within AZOBR_RS23305at 254.632 kb on + strand, within AZOBR_RS23305at 254.633 kb on - strand, within AZOBR_RS23305at 254.633 kb on - strand, within AZOBR_RS23305at 254.634 kb on + strand, within AZOBR_RS23305at 254.634 kb on + strand, within AZOBR_RS23305at 254.634 kb on + strand, within AZOBR_RS23305at 254.634 kb on + strand, within AZOBR_RS23305at 254.635 kb on - strand, within AZOBR_RS23305at 254.690 kb on - strand, within AZOBR_RS23305at 254.690 kb on - strand, within AZOBR_RS23305at 254.728 kb on + strand, within AZOBR_RS23305at 254.728 kb on + strand, within AZOBR_RS23305at 254.729 kb on - strand, within AZOBR_RS23305at 254.729 kb on - strand, within AZOBR_RS23305at 255.092 kb on - strand, within AZOBR_RS23305at 255.134 kb on - strand, within AZOBR_RS23305at 255.355 kb on + strandat 255.356 kb on - strandat 255.364 kb on + strandat 255.364 kb on + strandat 255.364 kb on + strandat 255.364 kb on + strandat 255.364 kb on + strandat 255.364 kb on + strandat 255.364 kb on + strandat 255.364 kb on + strandat 255.364 kb on + strandat 255.368 kb on + strandat 255.369 kb on - strandat 255.703 kb on - strand, within AZOBR_RS23310at 255.703 kb on - strand, within AZOBR_RS23310at 256.252 kb on - strand, within AZOBR_RS23310at 256.252 kb on - strand, within AZOBR_RS23310at 256.291 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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253,603 - AZOBR_RS23300 0.36 -0.1
253,755 + AZOBR_RS23300 0.53 -0.6
253,755 + AZOBR_RS23300 0.53 -0.2
253,776 + AZOBR_RS23300 0.55 -0.1
253,777 - AZOBR_RS23300 0.55 -0.2
253,777 - AZOBR_RS23300 0.55 -0.0
253,777 - AZOBR_RS23300 0.55 +0.3
253,777 - AZOBR_RS23300 0.55 +0.2
253,777 - AZOBR_RS23300 0.55 -0.6
253,857 + AZOBR_RS23300 0.64 +0.3
253,857 + AZOBR_RS23300 0.64 +0.5
253,857 + AZOBR_RS23300 0.64 +1.6
254,531 - AZOBR_RS23305 0.15 +0.1
254,531 - AZOBR_RS23305 0.15 +0.4
254,632 + AZOBR_RS23305 0.25 -0.5
254,632 + AZOBR_RS23305 0.25 +0.0
254,632 + AZOBR_RS23305 0.25 +0.4
254,632 + AZOBR_RS23305 0.25 +0.8
254,632 + AZOBR_RS23305 0.25 -0.3
254,633 - AZOBR_RS23305 0.25 +0.1
254,633 - AZOBR_RS23305 0.25 +0.7
254,634 + AZOBR_RS23305 0.25 +0.8
254,634 + AZOBR_RS23305 0.25 +0.9
254,634 + AZOBR_RS23305 0.25 +0.4
254,634 + AZOBR_RS23305 0.25 -1.9
254,635 - AZOBR_RS23305 0.25 -0.2
254,690 - AZOBR_RS23305 0.31 +0.2
254,690 - AZOBR_RS23305 0.31 -0.0
254,728 + AZOBR_RS23305 0.35 +0.5
254,728 + AZOBR_RS23305 0.35 +0.2
254,729 - AZOBR_RS23305 0.35 +0.5
254,729 - AZOBR_RS23305 0.35 +2.2
255,092 - AZOBR_RS23305 0.72 -1.3
255,134 - AZOBR_RS23305 0.76 -1.0
255,355 + -0.3
255,356 - -0.8
255,364 + -0.8
255,364 + -0.5
255,364 + -0.1
255,364 + -0.4
255,364 + -0.2
255,364 + +0.4
255,364 + -0.5
255,364 + +0.6
255,364 + -0.1
255,368 + -0.2
255,369 - -0.2
255,703 - AZOBR_RS23310 0.31 +0.3
255,703 - AZOBR_RS23310 0.31 -5.3
256,252 - AZOBR_RS23310 0.87 -0.5
256,252 - AZOBR_RS23310 0.87 -0.7
256,291 - +0.1

Or see this region's nucleotide sequence