Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21685

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21675 and AZOBR_RS21680 are separated by 43 nucleotidesAZOBR_RS21680 and AZOBR_RS21685 are separated by 268 nucleotidesAZOBR_RS21685 and AZOBR_RS21690 are separated by 32 nucleotides AZOBR_RS21675: AZOBR_RS21675 - hypothetical protein, at 1,641,724 to 1,642,245 _RS21675 AZOBR_RS21680: AZOBR_RS21680 - hypothetical protein, at 1,642,289 to 1,642,576 _RS21680 AZOBR_RS21685: AZOBR_RS21685 - formyltetrahydrofolate deformylase, at 1,642,845 to 1,643,711 _RS21685 AZOBR_RS21690: AZOBR_RS21690 - regulator, at 1,643,744 to 1,644,538 _RS21690 Position (kb) 1642 1643 1644Strain fitness (log2 ratio) -3 -2 -1 0 1at 1641.979 kb on + strand, within AZOBR_RS21675at 1641.979 kb on + strand, within AZOBR_RS21675at 1641.979 kb on + strand, within AZOBR_RS21675at 1641.979 kb on + strand, within AZOBR_RS21675at 1641.979 kb on + strand, within AZOBR_RS21675at 1641.979 kb on + strand, within AZOBR_RS21675at 1641.979 kb on + strand, within AZOBR_RS21675at 1641.980 kb on - strand, within AZOBR_RS21675at 1641.980 kb on - strand, within AZOBR_RS21675at 1641.980 kb on - strand, within AZOBR_RS21675at 1641.980 kb on - strand, within AZOBR_RS21675at 1641.980 kb on - strand, within AZOBR_RS21675at 1641.980 kb on - strand, within AZOBR_RS21675at 1641.980 kb on - strand, within AZOBR_RS21675at 1642.018 kb on + strand, within AZOBR_RS21675at 1642.021 kb on + strand, within AZOBR_RS21675at 1642.022 kb on - strand, within AZOBR_RS21675at 1642.022 kb on - strand, within AZOBR_RS21675at 1642.154 kb on - strand, within AZOBR_RS21675at 1642.220 kb on - strandat 1642.305 kb on + strandat 1642.359 kb on + strand, within AZOBR_RS21680at 1642.360 kb on - strand, within AZOBR_RS21680at 1642.443 kb on + strand, within AZOBR_RS21680at 1642.482 kb on - strand, within AZOBR_RS21680at 1642.482 kb on - strand, within AZOBR_RS21680at 1642.482 kb on - strand, within AZOBR_RS21680at 1642.482 kb on - strand, within AZOBR_RS21680at 1642.482 kb on - strand, within AZOBR_RS21680at 1642.762 kb on + strandat 1643.710 kb on - strandat 1644.256 kb on - strand, within AZOBR_RS21690at 1644.256 kb on - strand, within AZOBR_RS21690at 1644.256 kb on - strand, within AZOBR_RS21690at 1644.366 kb on + strand, within AZOBR_RS21690at 1644.420 kb on + strand, within AZOBR_RS21690at 1644.498 kb on + strandat 1644.498 kb on + strandat 1644.498 kb on + strandat 1644.552 kb on + strandat 1644.647 kb on + strandat 1644.648 kb on - strandat 1644.655 kb on + strandat 1644.656 kb on - strandat 1644.707 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,641,979 + AZOBR_RS21675 0.49 -0.1
1,641,979 + AZOBR_RS21675 0.49 +0.3
1,641,979 + AZOBR_RS21675 0.49 -0.3
1,641,979 + AZOBR_RS21675 0.49 -0.3
1,641,979 + AZOBR_RS21675 0.49 +1.0
1,641,979 + AZOBR_RS21675 0.49 -0.5
1,641,979 + AZOBR_RS21675 0.49 -0.5
1,641,980 - AZOBR_RS21675 0.49 -0.0
1,641,980 - AZOBR_RS21675 0.49 -0.4
1,641,980 - AZOBR_RS21675 0.49 -0.0
1,641,980 - AZOBR_RS21675 0.49 -0.2
1,641,980 - AZOBR_RS21675 0.49 -0.0
1,641,980 - AZOBR_RS21675 0.49 -0.6
1,641,980 - AZOBR_RS21675 0.49 -0.6
1,642,018 + AZOBR_RS21675 0.56 -0.3
1,642,021 + AZOBR_RS21675 0.57 +0.4
1,642,022 - AZOBR_RS21675 0.57 +0.0
1,642,022 - AZOBR_RS21675 0.57 +0.2
1,642,154 - AZOBR_RS21675 0.82 -2.8
1,642,220 - +0.2
1,642,305 + +0.4
1,642,359 + AZOBR_RS21680 0.24 +0.5
1,642,360 - AZOBR_RS21680 0.25 +0.0
1,642,443 + AZOBR_RS21680 0.53 -0.4
1,642,482 - AZOBR_RS21680 0.67 +0.3
1,642,482 - AZOBR_RS21680 0.67 -0.3
1,642,482 - AZOBR_RS21680 0.67 -0.5
1,642,482 - AZOBR_RS21680 0.67 -0.1
1,642,482 - AZOBR_RS21680 0.67 +0.0
1,642,762 + -0.4
1,643,710 - -1.3
1,644,256 - AZOBR_RS21690 0.64 -0.5
1,644,256 - AZOBR_RS21690 0.64 -1.0
1,644,256 - AZOBR_RS21690 0.64 -1.3
1,644,366 + AZOBR_RS21690 0.78 -0.5
1,644,420 + AZOBR_RS21690 0.85 -0.7
1,644,498 + -0.3
1,644,498 + -0.6
1,644,498 + -2.1
1,644,552 + -0.4
1,644,647 + -0.3
1,644,648 - +0.2
1,644,655 + -0.7
1,644,656 - +0.1
1,644,707 + -1.0

Or see this region's nucleotide sequence