Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03800

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03795 and AO353_03800 are separated by 156 nucleotidesAO353_03800 and AO353_03805 overlap by 7 nucleotides AO353_03795: AO353_03795 - fumarate hydratase, at 810,530 to 812,053 _03795 AO353_03800: AO353_03800 - cytochrome C biogenesis protein CcmE, at 812,210 to 813,976 _03800 AO353_03805: AO353_03805 - C4-dicarboxylate ABC transporter, at 813,970 to 815,295 _03805 Position (kb) 812 813 814Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 811.550 kb on - strand, within AO353_03795at 811.647 kb on - strand, within AO353_03795at 811.647 kb on - strand, within AO353_03795at 811.647 kb on - strand, within AO353_03795at 811.650 kb on - strand, within AO353_03795at 811.829 kb on + strand, within AO353_03795at 811.830 kb on - strand, within AO353_03795at 811.856 kb on + strand, within AO353_03795at 811.856 kb on + strand, within AO353_03795at 811.857 kb on - strand, within AO353_03795at 811.925 kb on + strandat 811.926 kb on - strandat 812.040 kb on + strandat 812.040 kb on + strandat 812.040 kb on + strandat 812.040 kb on + strandat 812.041 kb on - strandat 812.041 kb on - strandat 812.041 kb on - strandat 812.051 kb on + strandat 812.051 kb on + strandat 812.051 kb on + strandat 812.051 kb on + strandat 812.051 kb on + strandat 812.051 kb on + strandat 812.052 kb on - strandat 812.052 kb on - strandat 812.052 kb on - strandat 812.052 kb on - strandat 812.052 kb on - strandat 812.172 kb on + strandat 812.172 kb on + strandat 812.172 kb on + strandat 812.172 kb on + strandat 812.172 kb on + strandat 812.173 kb on - strandat 812.173 kb on - strandat 812.173 kb on - strandat 812.173 kb on - strandat 812.173 kb on - strandat 812.173 kb on - strandat 812.173 kb on - strandat 812.188 kb on - strandat 812.204 kb on + strandat 812.205 kb on - strandat 812.246 kb on + strandat 812.246 kb on + strandat 812.246 kb on + strandat 812.246 kb on + strandat 812.246 kb on + strandat 812.246 kb on + strandat 812.246 kb on + strandat 812.247 kb on - strandat 812.247 kb on - strandat 812.247 kb on - strandat 812.247 kb on - strandat 812.247 kb on - strandat 812.247 kb on - strandat 812.247 kb on - strandat 812.247 kb on - strandat 812.247 kb on - strandat 812.249 kb on - strandat 812.249 kb on - strandat 812.361 kb on - strandat 812.421 kb on + strand, within AO353_03800at 812.488 kb on + strand, within AO353_03800at 812.488 kb on + strand, within AO353_03800at 812.488 kb on + strand, within AO353_03800at 812.591 kb on + strand, within AO353_03800at 812.591 kb on + strand, within AO353_03800at 812.591 kb on + strand, within AO353_03800at 812.592 kb on - strand, within AO353_03800at 812.592 kb on - strand, within AO353_03800at 812.592 kb on - strand, within AO353_03800at 812.592 kb on - strand, within AO353_03800at 812.606 kb on + strand, within AO353_03800at 812.606 kb on + strand, within AO353_03800at 812.607 kb on - strand, within AO353_03800at 812.607 kb on - strand, within AO353_03800at 812.621 kb on + strand, within AO353_03800at 812.622 kb on - strand, within AO353_03800at 812.660 kb on + strand, within AO353_03800at 812.829 kb on + strand, within AO353_03800at 812.829 kb on + strand, within AO353_03800at 812.829 kb on + strand, within AO353_03800at 812.829 kb on + strand, within AO353_03800at 812.830 kb on - strand, within AO353_03800at 812.830 kb on - strand, within AO353_03800at 812.830 kb on - strand, within AO353_03800at 812.830 kb on - strand, within AO353_03800at 812.830 kb on - strand, within AO353_03800at 812.830 kb on - strand, within AO353_03800at 812.830 kb on - strand, within AO353_03800at 812.830 kb on - strand, within AO353_03800at 812.830 kb on - strand, within AO353_03800at 812.830 kb on - strand, within AO353_03800at 812.837 kb on - strand, within AO353_03800at 812.921 kb on + strand, within AO353_03800at 812.922 kb on - strand, within AO353_03800at 812.922 kb on - strand, within AO353_03800at 812.984 kb on + strand, within AO353_03800at 812.984 kb on + strand, within AO353_03800at 812.984 kb on + strand, within AO353_03800at 812.984 kb on + strand, within AO353_03800at 812.984 kb on + strand, within AO353_03800at 812.984 kb on + strand, within AO353_03800at 812.984 kb on + strand, within AO353_03800at 812.985 kb on - strand, within AO353_03800at 812.985 kb on - strand, within AO353_03800at 812.985 kb on - strand, within AO353_03800at 812.985 kb on - strand, within AO353_03800at 812.985 kb on - strand, within AO353_03800at 813.023 kb on + strand, within AO353_03800at 813.023 kb on + strand, within AO353_03800at 813.023 kb on + strand, within AO353_03800at 813.024 kb on - strand, within AO353_03800at 813.024 kb on - strand, within AO353_03800at 813.024 kb on - strand, within AO353_03800at 813.024 kb on - strand, within AO353_03800at 813.413 kb on + strand, within AO353_03800at 813.414 kb on - strand, within AO353_03800at 813.414 kb on - strand, within AO353_03800at 813.414 kb on - strand, within AO353_03800at 813.414 kb on - strand, within AO353_03800at 813.414 kb on - strand, within AO353_03800at 813.414 kb on - strand, within AO353_03800at 813.414 kb on - strand, within AO353_03800at 813.415 kb on + strand, within AO353_03800at 813.416 kb on - strand, within AO353_03800at 813.555 kb on + strand, within AO353_03800at 813.555 kb on + strand, within AO353_03800at 813.555 kb on + strand, within AO353_03800at 813.555 kb on + strand, within AO353_03800at 813.555 kb on + strand, within AO353_03800at 813.555 kb on + strand, within AO353_03800at 813.556 kb on - strand, within AO353_03800at 813.556 kb on - strand, within AO353_03800at 813.741 kb on + strand, within AO353_03800at 813.741 kb on + strand, within AO353_03800at 813.741 kb on + strand, within AO353_03800at 813.741 kb on + strand, within AO353_03800at 813.741 kb on + strand, within AO353_03800at 813.742 kb on - strand, within AO353_03800at 813.742 kb on - strand, within AO353_03800at 814.008 kb on + strandat 814.008 kb on + strandat 814.008 kb on + strandat 814.008 kb on + strandat 814.009 kb on - strandat 814.009 kb on - strandat 814.009 kb on - strandat 814.607 kb on + strand, within AO353_03805at 814.608 kb on - strand, within AO353_03805at 814.669 kb on + strand, within AO353_03805at 814.670 kb on - strand, within AO353_03805at 814.796 kb on + strand, within AO353_03805at 814.797 kb on - strand, within AO353_03805at 814.797 kb on - strand, within AO353_03805at 814.797 kb on - strand, within AO353_03805at 814.797 kb on - strand, within AO353_03805

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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811,550 - AO353_03795 0.67 -2.1
811,647 - AO353_03795 0.73 -2.6
811,647 - AO353_03795 0.73 -2.1
811,647 - AO353_03795 0.73 -0.5
811,650 - AO353_03795 0.73 -0.0
811,829 + AO353_03795 0.85 -1.1
811,830 - AO353_03795 0.85 -3.9
811,856 + AO353_03795 0.87 -1.1
811,856 + AO353_03795 0.87 -2.8
811,857 - AO353_03795 0.87 +1.4
811,925 + -1.0
811,926 - -2.1
812,040 + -0.4
812,040 + +1.4
812,040 + +0.3
812,040 + +1.0
812,041 - -0.1
812,041 - +1.3
812,041 - -0.7
812,051 + +0.1
812,051 + -0.5
812,051 + -0.9
812,051 + -2.1
812,051 + -0.6
812,051 + -0.1
812,052 - -0.2
812,052 - +0.6
812,052 - -0.3
812,052 - +0.9
812,052 - +0.7
812,172 + -1.2
812,172 + +0.2
812,172 + -0.0
812,172 + +0.6
812,172 + +0.2
812,173 - -4.7
812,173 - -0.1
812,173 - -2.3
812,173 - -0.1
812,173 - -2.8
812,173 - -1.8
812,173 - -1.0
812,188 - -2.7
812,204 + -0.3
812,205 - -1.5
812,246 + -0.3
812,246 + -1.8
812,246 + -1.1
812,246 + -4.3
812,246 + -1.0
812,246 + -3.2
812,246 + +2.1
812,247 - -0.7
812,247 - -2.3
812,247 - -2.5
812,247 - -3.5
812,247 - -2.5
812,247 - -3.1
812,247 - -2.5
812,247 - -0.5
812,247 - -1.1
812,249 - -3.6
812,249 - -1.7
812,361 - -2.1
812,421 + AO353_03800 0.12 -1.1
812,488 + AO353_03800 0.16 -2.1
812,488 + AO353_03800 0.16 -3.5
812,488 + AO353_03800 0.16 -3.1
812,591 + AO353_03800 0.22 -1.3
812,591 + AO353_03800 0.22 -1.4
812,591 + AO353_03800 0.22 -1.0
812,592 - AO353_03800 0.22 -2.0
812,592 - AO353_03800 0.22 -3.7
812,592 - AO353_03800 0.22 -2.4
812,592 - AO353_03800 0.22 -2.3
812,606 + AO353_03800 0.22 -1.0
812,606 + AO353_03800 0.22 -2.5
812,607 - AO353_03800 0.22 -0.5
812,607 - AO353_03800 0.22 -1.1
812,621 + AO353_03800 0.23 -2.8
812,622 - AO353_03800 0.23 -1.5
812,660 + AO353_03800 0.25 -3.0
812,829 + AO353_03800 0.35 -2.7
812,829 + AO353_03800 0.35 -3.9
812,829 + AO353_03800 0.35 +0.9
812,829 + AO353_03800 0.35 -2.8
812,830 - AO353_03800 0.35 -2.5
812,830 - AO353_03800 0.35 -2.0
812,830 - AO353_03800 0.35 -3.9
812,830 - AO353_03800 0.35 -3.5
812,830 - AO353_03800 0.35 -1.4
812,830 - AO353_03800 0.35 -1.6
812,830 - AO353_03800 0.35 -2.7
812,830 - AO353_03800 0.35 -0.7
812,830 - AO353_03800 0.35 -2.7
812,830 - AO353_03800 0.35 -1.0
812,837 - AO353_03800 0.35 -1.1
812,921 + AO353_03800 0.40 -1.8
812,922 - AO353_03800 0.40 -1.8
812,922 - AO353_03800 0.40 -3.1
812,984 + AO353_03800 0.44 -4.0
812,984 + AO353_03800 0.44 -2.5
812,984 + AO353_03800 0.44 -3.1
812,984 + AO353_03800 0.44 -1.0
812,984 + AO353_03800 0.44 -1.0
812,984 + AO353_03800 0.44 -0.7
812,984 + AO353_03800 0.44 -0.1
812,985 - AO353_03800 0.44 -0.8
812,985 - AO353_03800 0.44 -3.0
812,985 - AO353_03800 0.44 -2.4
812,985 - AO353_03800 0.44 -3.9
812,985 - AO353_03800 0.44 -1.5
813,023 + AO353_03800 0.46 -0.5
813,023 + AO353_03800 0.46 -3.2
813,023 + AO353_03800 0.46 -2.2
813,024 - AO353_03800 0.46 -3.3
813,024 - AO353_03800 0.46 -0.6
813,024 - AO353_03800 0.46 -2.8
813,024 - AO353_03800 0.46 -0.5
813,413 + AO353_03800 0.68 -0.8
813,414 - AO353_03800 0.68 -1.7
813,414 - AO353_03800 0.68 -2.1
813,414 - AO353_03800 0.68 -1.6
813,414 - AO353_03800 0.68 -2.1
813,414 - AO353_03800 0.68 -2.1
813,414 - AO353_03800 0.68 -2.6
813,414 - AO353_03800 0.68 -1.0
813,415 + AO353_03800 0.68 -1.5
813,416 - AO353_03800 0.68 -2.3
813,555 + AO353_03800 0.76 -1.3
813,555 + AO353_03800 0.76 -2.9
813,555 + AO353_03800 0.76 -1.7
813,555 + AO353_03800 0.76 -1.1
813,555 + AO353_03800 0.76 -1.5
813,555 + AO353_03800 0.76 -1.8
813,556 - AO353_03800 0.76 -1.6
813,556 - AO353_03800 0.76 -3.0
813,741 + AO353_03800 0.87 -1.4
813,741 + AO353_03800 0.87 -3.1
813,741 + AO353_03800 0.87 +0.5
813,741 + AO353_03800 0.87 -3.0
813,741 + AO353_03800 0.87 -2.5
813,742 - AO353_03800 0.87 -1.3
813,742 - AO353_03800 0.87 -2.0
814,008 + -2.0
814,008 + -1.3
814,008 + -1.8
814,008 + -2.6
814,009 - -2.8
814,009 - -3.0
814,009 - -3.4
814,607 + AO353_03805 0.48 -2.7
814,608 - AO353_03805 0.48 -1.0
814,669 + AO353_03805 0.53 -1.3
814,670 - AO353_03805 0.53 -1.6
814,796 + AO353_03805 0.62 -3.1
814,797 - AO353_03805 0.62 -3.6
814,797 - AO353_03805 0.62 +1.1
814,797 - AO353_03805 0.62 -2.0
814,797 - AO353_03805 0.62 -1.6

Or see this region's nucleotide sequence