Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 5 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01080 and MMP_RS01085 are separated by 202 nucleotides MMP_RS01085 and MMP_RS01090 are separated by 182 nucleotides
MMP_RS01080: MMP_RS01080 - DUF2202 domain-containing protein, at 202,505 to 203,332
_RS01080
MMP_RS01085: MMP_RS01085 - hypothetical protein, at 203,535 to 203,849
_RS01085
MMP_RS01090: MMP_RS01090 - ABC transporter substrate-binding protein, at 204,032 to 205,093
_RS01090
Position (kb) 203
204 Strain fitness (log2 ratio) -1
0
1 at 202.554 kb on - strand at 202.760 kb on - strand, within MMP_RS01080 at 202.771 kb on + strand, within MMP_RS01080 at 202.771 kb on + strand, within MMP_RS01080 at 202.800 kb on - strand, within MMP_RS01080 at 202.814 kb on + strand, within MMP_RS01080 at 202.846 kb on + strand, within MMP_RS01080 at 202.852 kb on + strand, within MMP_RS01080 at 203.169 kb on + strand, within MMP_RS01080 at 203.385 kb on + strand at 203.430 kb on - strand at 203.443 kb on + strand at 203.532 kb on - strand at 203.553 kb on + strand at 203.615 kb on + strand, within MMP_RS01085 at 203.909 kb on - strand at 204.027 kb on - strand at 204.193 kb on + strand, within MMP_RS01090 at 204.366 kb on - strand, within MMP_RS01090 at 204.476 kb on + strand, within MMP_RS01090 at 204.476 kb on + strand, within MMP_RS01090 at 204.480 kb on + strand, within MMP_RS01090 at 204.485 kb on + strand, within MMP_RS01090 at 204.527 kb on - strand, within MMP_RS01090 at 204.562 kb on - strand, within MMP_RS01090 at 204.562 kb on - strand, within MMP_RS01090 at 204.577 kb on + strand, within MMP_RS01090 at 204.694 kb on - strand, within MMP_RS01090 at 204.694 kb on - strand, within MMP_RS01090 at 204.695 kb on + strand, within MMP_RS01090 at 204.790 kb on + strand, within MMP_RS01090
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 5 generations remove 202,554 - -0.3 202,760 - MMP_RS01080 0.31 -0.1 202,771 + MMP_RS01080 0.32 +0.1 202,771 + MMP_RS01080 0.32 +0.2 202,800 - MMP_RS01080 0.36 +0.5 202,814 + MMP_RS01080 0.37 +0.5 202,846 + MMP_RS01080 0.41 +0.3 202,852 + MMP_RS01080 0.42 -1.0 203,169 + MMP_RS01080 0.80 -0.1 203,385 + +0.3 203,430 - +0.5 203,443 + +0.2 203,532 - -0.3 203,553 + -0.0 203,615 + MMP_RS01085 0.25 -0.5 203,909 - +0.7 204,027 - +0.5 204,193 + MMP_RS01090 0.15 +0.3 204,366 - MMP_RS01090 0.31 +0.1 204,476 + MMP_RS01090 0.42 +0.7 204,476 + MMP_RS01090 0.42 +0.0 204,480 + MMP_RS01090 0.42 -0.6 204,485 + MMP_RS01090 0.43 -0.2 204,527 - MMP_RS01090 0.47 +0.2 204,562 - MMP_RS01090 0.50 -0.1 204,562 - MMP_RS01090 0.50 +0.7 204,577 + MMP_RS01090 0.51 +0.4 204,694 - MMP_RS01090 0.62 -0.0 204,694 - MMP_RS01090 0.62 -0.2 204,695 + MMP_RS01090 0.62 +0.1 204,790 + MMP_RS01090 0.71 +0.4
Or see this region's nucleotide sequence