Strain Fitness in Pantoea sp. MT58 around IAI47_13750

Experiment: dichromate 5 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_13745 and IAI47_13750 are separated by 200 nucleotidesIAI47_13750 and IAI47_13755 are separated by 14 nucleotides IAI47_13745: IAI47_13745 - 2-oxoglutarate dehydrogenase E1 component, at 2,909,785 to 2,912,592 _13745 IAI47_13750: IAI47_13750 - succinate dehydrogenase iron-sulfur subunit, at 2,912,793 to 2,913,509 _13750 IAI47_13755: IAI47_13755 - succinate dehydrogenase flavoprotein subunit, at 2,913,524 to 2,915,290 _13755 Position (kb) 2912 2913 2914Strain fitness (log2 ratio) -2 -1 0 1 2at 2912.076 kb on + strand, within IAI47_13745at 2912.077 kb on - strand, within IAI47_13745at 2912.077 kb on - strand, within IAI47_13745at 2912.077 kb on - strand, within IAI47_13745at 2912.171 kb on - strand, within IAI47_13745at 2912.525 kb on - strandat 2912.529 kb on - strandat 2912.604 kb on - strandat 2912.675 kb on - strandat 2912.675 kb on - strandat 2912.675 kb on - strandat 2912.720 kb on - strandat 2912.720 kb on - strandat 2912.729 kb on - strandat 2912.729 kb on - strandat 2912.729 kb on - strandat 2912.742 kb on - strandat 2912.789 kb on + strandat 2912.790 kb on - strandat 2912.790 kb on - strandat 2912.790 kb on - strandat 2912.790 kb on - strandat 2912.794 kb on + strandat 2912.795 kb on - strandat 2912.795 kb on - strandat 2912.795 kb on - strandat 2912.795 kb on - strandat 2913.063 kb on - strand, within IAI47_13750at 2913.063 kb on - strand, within IAI47_13750at 2913.070 kb on + strand, within IAI47_13750at 2913.070 kb on + strand, within IAI47_13750at 2913.070 kb on + strand, within IAI47_13750at 2913.071 kb on - strand, within IAI47_13750at 2913.071 kb on - strand, within IAI47_13750at 2913.071 kb on - strand, within IAI47_13750at 2913.071 kb on - strand, within IAI47_13750at 2913.071 kb on - strand, within IAI47_13750at 2913.071 kb on - strand, within IAI47_13750at 2913.170 kb on - strand, within IAI47_13750at 2913.179 kb on - strand, within IAI47_13750at 2913.281 kb on + strand, within IAI47_13750at 2913.282 kb on - strand, within IAI47_13750at 2913.285 kb on - strand, within IAI47_13750at 2913.442 kb on + strandat 2913.443 kb on - strandat 2913.443 kb on - strandat 2913.443 kb on - strandat 2913.443 kb on - strandat 2913.482 kb on - strandat 2913.526 kb on - strandat 2913.528 kb on + strandat 2913.532 kb on + strandat 2913.533 kb on - strandat 2913.615 kb on + strandat 2913.616 kb on - strandat 2913.697 kb on - strandat 2913.760 kb on + strand, within IAI47_13755at 2913.770 kb on - strand, within IAI47_13755at 2913.873 kb on - strand, within IAI47_13755at 2913.938 kb on - strand, within IAI47_13755at 2913.938 kb on - strand, within IAI47_13755at 2913.940 kb on + strand, within IAI47_13755at 2913.941 kb on - strand, within IAI47_13755at 2913.941 kb on - strand, within IAI47_13755at 2913.941 kb on - strand, within IAI47_13755at 2914.021 kb on + strand, within IAI47_13755at 2914.022 kb on - strand, within IAI47_13755at 2914.084 kb on + strand, within IAI47_13755at 2914.116 kb on - strand, within IAI47_13755at 2914.116 kb on - strand, within IAI47_13755at 2914.227 kb on + strand, within IAI47_13755at 2914.227 kb on + strand, within IAI47_13755at 2914.228 kb on - strand, within IAI47_13755at 2914.228 kb on - strand, within IAI47_13755

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 5 uM, aerobic
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2,912,076 + IAI47_13745 0.82 -2.1
2,912,077 - IAI47_13745 0.82 -1.9
2,912,077 - IAI47_13745 0.82 -1.0
2,912,077 - IAI47_13745 0.82 -2.4
2,912,171 - IAI47_13745 0.85 -0.2
2,912,525 - -0.4
2,912,529 - -1.3
2,912,604 - +1.8
2,912,675 - +0.3
2,912,675 - +0.3
2,912,675 - -0.3
2,912,720 - +0.4
2,912,720 - +2.2
2,912,729 - +1.5
2,912,729 - +1.9
2,912,729 - -1.7
2,912,742 - +0.8
2,912,789 + -0.9
2,912,790 - +0.3
2,912,790 - -0.9
2,912,790 - -1.1
2,912,790 - +1.1
2,912,794 + -0.7
2,912,795 - -0.6
2,912,795 - +0.7
2,912,795 - +1.5
2,912,795 - -2.3
2,913,063 - IAI47_13750 0.38 +0.5
2,913,063 - IAI47_13750 0.38 +0.1
2,913,070 + IAI47_13750 0.39 +0.3
2,913,070 + IAI47_13750 0.39 +0.8
2,913,070 + IAI47_13750 0.39 +0.4
2,913,071 - IAI47_13750 0.39 +1.3
2,913,071 - IAI47_13750 0.39 +0.3
2,913,071 - IAI47_13750 0.39 +0.0
2,913,071 - IAI47_13750 0.39 -0.8
2,913,071 - IAI47_13750 0.39 -1.2
2,913,071 - IAI47_13750 0.39 +0.8
2,913,170 - IAI47_13750 0.53 +0.0
2,913,179 - IAI47_13750 0.54 -0.2
2,913,281 + IAI47_13750 0.68 -1.0
2,913,282 - IAI47_13750 0.68 +0.7
2,913,285 - IAI47_13750 0.69 +0.8
2,913,442 + +1.7
2,913,443 - -0.6
2,913,443 - -0.9
2,913,443 - +0.5
2,913,443 - +0.3
2,913,482 - +0.1
2,913,526 - -1.9
2,913,528 + -0.2
2,913,532 + +0.6
2,913,533 - -1.0
2,913,615 + +1.0
2,913,616 - +0.6
2,913,697 - -1.1
2,913,760 + IAI47_13755 0.13 +1.8
2,913,770 - IAI47_13755 0.14 +0.4
2,913,873 - IAI47_13755 0.20 +0.4
2,913,938 - IAI47_13755 0.23 -1.7
2,913,938 - IAI47_13755 0.23 +0.4
2,913,940 + IAI47_13755 0.24 -0.2
2,913,941 - IAI47_13755 0.24 +0.4
2,913,941 - IAI47_13755 0.24 +0.5
2,913,941 - IAI47_13755 0.24 +0.2
2,914,021 + IAI47_13755 0.28 +0.3
2,914,022 - IAI47_13755 0.28 -1.0
2,914,084 + IAI47_13755 0.32 -0.3
2,914,116 - IAI47_13755 0.34 -0.6
2,914,116 - IAI47_13755 0.34 -0.7
2,914,227 + IAI47_13755 0.40 -1.2
2,914,227 + IAI47_13755 0.40 +0.0
2,914,228 - IAI47_13755 0.40 +0.0
2,914,228 - IAI47_13755 0.40 -0.3

Or see this region's nucleotide sequence