Strain Fitness in Pantoea sp. MT58 around IAI47_02415

Experiment: dichromate 5 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02405 and IAI47_02410 are separated by 11 nucleotidesIAI47_02410 and IAI47_02415 are separated by 25 nucleotidesIAI47_02415 and IAI47_02420 are separated by 232 nucleotidesIAI47_02420 and IAI47_02425 are separated by 0 nucleotides IAI47_02405: IAI47_02405 - acetyl-CoA carboxylase biotin carboxylase subunit, at 495,133 to 496,482 _02405 IAI47_02410: IAI47_02410 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 496,494 to 496,955 _02410 IAI47_02415: IAI47_02415 - type II 3-dehydroquinate dehydratase, at 496,981 to 497,433 _02415 IAI47_02420: IAI47_02420 - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 497,666 to 498,271 _02420 IAI47_02425: IAI47_02425 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 498,272 to 499,276 _02425 Position (kb) 496 497 498Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 497.476 kb on - strandat 497.533 kb on + strandat 497.533 kb on + strandat 497.534 kb on - strandat 497.534 kb on - strandat 497.546 kb on + strandat 497.587 kb on - strandat 497.587 kb on - strandat 497.608 kb on + strandat 497.608 kb on + strandat 497.609 kb on - strandat 497.708 kb on + strandat 497.709 kb on - strandat 497.715 kb on - strandat 497.733 kb on + strand, within IAI47_02420at 497.733 kb on + strand, within IAI47_02420at 497.733 kb on + strand, within IAI47_02420at 497.733 kb on + strand, within IAI47_02420at 497.733 kb on + strand, within IAI47_02420at 497.733 kb on + strand, within IAI47_02420at 497.733 kb on + strand, within IAI47_02420at 497.733 kb on + strand, within IAI47_02420at 497.734 kb on - strand, within IAI47_02420at 497.734 kb on - strand, within IAI47_02420at 497.734 kb on - strand, within IAI47_02420at 497.734 kb on - strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.737 kb on + strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.738 kb on - strand, within IAI47_02420at 497.773 kb on + strand, within IAI47_02420at 497.773 kb on + strand, within IAI47_02420at 497.773 kb on + strand, within IAI47_02420at 497.773 kb on + strand, within IAI47_02420at 497.773 kb on + strand, within IAI47_02420at 497.773 kb on + strand, within IAI47_02420at 497.773 kb on + strand, within IAI47_02420at 497.774 kb on - strand, within IAI47_02420at 497.774 kb on - strand, within IAI47_02420at 497.774 kb on - strand, within IAI47_02420at 497.774 kb on - strand, within IAI47_02420at 497.774 kb on - strand, within IAI47_02420at 497.776 kb on - strand, within IAI47_02420at 497.776 kb on - strand, within IAI47_02420at 497.776 kb on - strand, within IAI47_02420at 497.776 kb on - strand, within IAI47_02420at 497.805 kb on + strand, within IAI47_02420at 497.805 kb on + strand, within IAI47_02420at 497.805 kb on + strand, within IAI47_02420at 497.806 kb on - strand, within IAI47_02420at 497.806 kb on - strand, within IAI47_02420at 497.806 kb on - strand, within IAI47_02420at 497.806 kb on - strand, within IAI47_02420at 497.806 kb on - strand, within IAI47_02420at 497.836 kb on + strand, within IAI47_02420at 497.837 kb on - strand, within IAI47_02420at 497.885 kb on + strand, within IAI47_02420at 497.885 kb on + strand, within IAI47_02420at 497.885 kb on + strand, within IAI47_02420at 497.885 kb on + strand, within IAI47_02420at 497.886 kb on - strand, within IAI47_02420at 497.888 kb on + strand, within IAI47_02420at 497.888 kb on + strand, within IAI47_02420at 497.888 kb on + strand, within IAI47_02420at 497.889 kb on - strand, within IAI47_02420at 497.889 kb on - strand, within IAI47_02420at 497.889 kb on - strand, within IAI47_02420at 497.902 kb on + strand, within IAI47_02420at 497.902 kb on + strand, within IAI47_02420at 497.902 kb on + strand, within IAI47_02420at 497.903 kb on - strand, within IAI47_02420at 497.903 kb on - strand, within IAI47_02420at 497.903 kb on - strand, within IAI47_02420at 497.905 kb on + strand, within IAI47_02420at 497.906 kb on - strand, within IAI47_02420at 497.906 kb on - strand, within IAI47_02420at 497.906 kb on - strand, within IAI47_02420at 497.919 kb on + strand, within IAI47_02420at 497.919 kb on + strand, within IAI47_02420at 497.919 kb on + strand, within IAI47_02420at 497.920 kb on - strand, within IAI47_02420at 497.920 kb on - strand, within IAI47_02420at 497.982 kb on + strand, within IAI47_02420at 497.982 kb on + strand, within IAI47_02420at 497.985 kb on + strand, within IAI47_02420at 497.985 kb on + strand, within IAI47_02420at 497.985 kb on + strand, within IAI47_02420at 497.986 kb on - strand, within IAI47_02420at 497.986 kb on - strand, within IAI47_02420at 497.986 kb on - strand, within IAI47_02420at 497.986 kb on - strand, within IAI47_02420at 497.986 kb on - strand, within IAI47_02420at 498.023 kb on + strand, within IAI47_02420at 498.049 kb on + strand, within IAI47_02420at 498.142 kb on + strand, within IAI47_02420at 498.143 kb on - strand, within IAI47_02420at 498.143 kb on - strand, within IAI47_02420at 498.143 kb on - strand, within IAI47_02420at 498.195 kb on + strand, within IAI47_02420at 498.196 kb on - strand, within IAI47_02420at 498.196 kb on - strand, within IAI47_02420at 498.196 kb on - strand, within IAI47_02420at 498.273 kb on + strandat 498.273 kb on + strandat 498.273 kb on + strandat 498.273 kb on + strandat 498.273 kb on + strandat 498.273 kb on + strandat 498.273 kb on + strandat 498.274 kb on - strandat 498.274 kb on - strandat 498.274 kb on - strandat 498.274 kb on - strandat 498.274 kb on - strandat 498.276 kb on + strandat 498.276 kb on + strandat 498.276 kb on + strandat 498.276 kb on + strandat 498.277 kb on - strandat 498.277 kb on - strandat 498.277 kb on - strandat 498.287 kb on + strandat 498.287 kb on + strandat 498.303 kb on + strandat 498.303 kb on + strandat 498.304 kb on - strandat 498.314 kb on + strandat 498.314 kb on + strandat 498.314 kb on + strandat 498.314 kb on + strandat 498.421 kb on + strand, within IAI47_02425at 498.421 kb on + strand, within IAI47_02425at 498.421 kb on + strand, within IAI47_02425at 498.422 kb on - strand, within IAI47_02425at 498.422 kb on - strand, within IAI47_02425at 498.422 kb on - strand, within IAI47_02425at 498.422 kb on - strand, within IAI47_02425

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 5 uM, aerobic
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497,476 - +2.4
497,533 + +1.2
497,533 + -0.4
497,534 - +0.6
497,534 - -0.0
497,546 + +0.4
497,587 - +0.3
497,587 - -1.5
497,608 + -1.0
497,608 + -0.4
497,609 - +0.7
497,708 + +0.2
497,709 - -1.0
497,715 - +0.1
497,733 + IAI47_02420 0.11 -0.6
497,733 + IAI47_02420 0.11 +0.3
497,733 + IAI47_02420 0.11 -0.5
497,733 + IAI47_02420 0.11 +0.0
497,733 + IAI47_02420 0.11 -0.6
497,733 + IAI47_02420 0.11 +0.1
497,733 + IAI47_02420 0.11 +0.8
497,733 + IAI47_02420 0.11 +0.6
497,734 - IAI47_02420 0.11 -0.6
497,734 - IAI47_02420 0.11 -1.3
497,734 - IAI47_02420 0.11 +0.1
497,734 - IAI47_02420 0.11 -1.0
497,737 + IAI47_02420 0.12 +0.2
497,737 + IAI47_02420 0.12 -0.8
497,737 + IAI47_02420 0.12 -1.9
497,737 + IAI47_02420 0.12 -0.3
497,737 + IAI47_02420 0.12 +0.0
497,737 + IAI47_02420 0.12 +0.3
497,737 + IAI47_02420 0.12 +0.7
497,737 + IAI47_02420 0.12 -1.7
497,737 + IAI47_02420 0.12 +0.4
497,737 + IAI47_02420 0.12 +0.9
497,737 + IAI47_02420 0.12 +1.2
497,737 + IAI47_02420 0.12 +0.8
497,737 + IAI47_02420 0.12 -0.2
497,737 + IAI47_02420 0.12 +0.4
497,738 - IAI47_02420 0.12 +0.5
497,738 - IAI47_02420 0.12 -0.0
497,738 - IAI47_02420 0.12 -1.1
497,738 - IAI47_02420 0.12 +0.6
497,738 - IAI47_02420 0.12 +0.0
497,738 - IAI47_02420 0.12 -0.1
497,738 - IAI47_02420 0.12 +2.5
497,738 - IAI47_02420 0.12 -0.7
497,738 - IAI47_02420 0.12 -2.2
497,738 - IAI47_02420 0.12 -0.5
497,738 - IAI47_02420 0.12 +0.2
497,738 - IAI47_02420 0.12 -0.9
497,773 + IAI47_02420 0.18 -0.6
497,773 + IAI47_02420 0.18 -0.3
497,773 + IAI47_02420 0.18 -1.6
497,773 + IAI47_02420 0.18 +0.6
497,773 + IAI47_02420 0.18 +0.6
497,773 + IAI47_02420 0.18 -2.9
497,773 + IAI47_02420 0.18 -1.2
497,774 - IAI47_02420 0.18 -0.1
497,774 - IAI47_02420 0.18 -0.4
497,774 - IAI47_02420 0.18 +0.2
497,774 - IAI47_02420 0.18 -0.5
497,774 - IAI47_02420 0.18 -0.9
497,776 - IAI47_02420 0.18 -1.2
497,776 - IAI47_02420 0.18 -0.2
497,776 - IAI47_02420 0.18 -0.1
497,776 - IAI47_02420 0.18 -0.4
497,805 + IAI47_02420 0.23 +0.4
497,805 + IAI47_02420 0.23 +0.1
497,805 + IAI47_02420 0.23 +1.0
497,806 - IAI47_02420 0.23 +0.9
497,806 - IAI47_02420 0.23 -0.3
497,806 - IAI47_02420 0.23 -0.2
497,806 - IAI47_02420 0.23 -0.7
497,806 - IAI47_02420 0.23 +0.8
497,836 + IAI47_02420 0.28 -0.3
497,837 - IAI47_02420 0.28 -0.7
497,885 + IAI47_02420 0.36 -1.1
497,885 + IAI47_02420 0.36 +0.1
497,885 + IAI47_02420 0.36 -0.0
497,885 + IAI47_02420 0.36 +0.1
497,886 - IAI47_02420 0.36 +0.0
497,888 + IAI47_02420 0.37 -0.2
497,888 + IAI47_02420 0.37 -0.1
497,888 + IAI47_02420 0.37 -0.6
497,889 - IAI47_02420 0.37 -0.2
497,889 - IAI47_02420 0.37 -0.0
497,889 - IAI47_02420 0.37 -0.7
497,902 + IAI47_02420 0.39 +1.2
497,902 + IAI47_02420 0.39 +1.0
497,902 + IAI47_02420 0.39 -0.3
497,903 - IAI47_02420 0.39 +0.3
497,903 - IAI47_02420 0.39 -0.2
497,903 - IAI47_02420 0.39 -2.1
497,905 + IAI47_02420 0.39 -0.4
497,906 - IAI47_02420 0.40 +0.5
497,906 - IAI47_02420 0.40 +0.5
497,906 - IAI47_02420 0.40 -1.2
497,919 + IAI47_02420 0.42 -1.8
497,919 + IAI47_02420 0.42 +0.4
497,919 + IAI47_02420 0.42 +0.3
497,920 - IAI47_02420 0.42 -0.3
497,920 - IAI47_02420 0.42 +0.7
497,982 + IAI47_02420 0.52 -1.4
497,982 + IAI47_02420 0.52 +0.8
497,985 + IAI47_02420 0.53 -1.9
497,985 + IAI47_02420 0.53 -2.5
497,985 + IAI47_02420 0.53 +0.6
497,986 - IAI47_02420 0.53 -0.1
497,986 - IAI47_02420 0.53 -0.6
497,986 - IAI47_02420 0.53 -0.4
497,986 - IAI47_02420 0.53 +0.9
497,986 - IAI47_02420 0.53 +0.7
498,023 + IAI47_02420 0.59 +0.4
498,049 + IAI47_02420 0.63 +0.7
498,142 + IAI47_02420 0.79 -0.4
498,143 - IAI47_02420 0.79 +0.2
498,143 - IAI47_02420 0.79 +0.5
498,143 - IAI47_02420 0.79 +0.7
498,195 + IAI47_02420 0.87 +0.4
498,196 - IAI47_02420 0.87 -0.1
498,196 - IAI47_02420 0.87 -0.4
498,196 - IAI47_02420 0.87 -2.5
498,273 + -1.5
498,273 + -0.1
498,273 + +0.6
498,273 + +0.9
498,273 + +1.2
498,273 + +0.6
498,273 + +0.5
498,274 - +1.0
498,274 - -0.3
498,274 - +0.6
498,274 - -1.3
498,274 - -0.5
498,276 + +0.9
498,276 + +0.2
498,276 + +0.7
498,276 + +0.2
498,277 - -0.1
498,277 - +0.3
498,277 - -2.6
498,287 + +1.1
498,287 + -0.0
498,303 + +0.9
498,303 + -1.6
498,304 - +0.5
498,314 + +0.8
498,314 + -0.7
498,314 + +0.4
498,314 + +0.8
498,421 + IAI47_02425 0.15 +0.5
498,421 + IAI47_02425 0.15 +0.6
498,421 + IAI47_02425 0.15 -0.7
498,422 - IAI47_02425 0.15 +0.1
498,422 - IAI47_02425 0.15 +0.4
498,422 - IAI47_02425 0.15 +0.3
498,422 - IAI47_02425 0.15 +0.3

Or see this region's nucleotide sequence