Strain Fitness in Pantoea sp. MT58 around IAI47_01890

Experiment: dichromate 5 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01885 and IAI47_01890 are separated by 363 nucleotidesIAI47_01890 and IAI47_01895 are separated by 38 nucleotides IAI47_01885: IAI47_01885 - DNA uptake porin HofQ, at 413,114 to 414,385 _01885 IAI47_01890: IAI47_01890 - shikimate kinase AroK, at 414,749 to 415,270 _01890 IAI47_01895: IAI47_01895 - 3-dehydroquinate synthase, at 415,309 to 416,397 _01895 Position (kb) 414 415 416Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 413.846 kb on - strand, within IAI47_01885at 413.847 kb on + strand, within IAI47_01885at 413.848 kb on - strand, within IAI47_01885at 413.874 kb on + strand, within IAI47_01885at 413.874 kb on + strand, within IAI47_01885at 413.929 kb on + strand, within IAI47_01885at 413.929 kb on + strand, within IAI47_01885at 413.930 kb on - strand, within IAI47_01885at 413.930 kb on - strand, within IAI47_01885at 413.930 kb on - strand, within IAI47_01885at 413.956 kb on + strand, within IAI47_01885at 413.957 kb on - strand, within IAI47_01885at 413.978 kb on + strand, within IAI47_01885at 413.978 kb on + strand, within IAI47_01885at 413.978 kb on + strand, within IAI47_01885at 413.979 kb on - strand, within IAI47_01885at 413.979 kb on - strand, within IAI47_01885at 413.979 kb on - strand, within IAI47_01885at 414.013 kb on + strand, within IAI47_01885at 414.013 kb on + strand, within IAI47_01885at 414.013 kb on + strand, within IAI47_01885at 414.013 kb on + strand, within IAI47_01885at 414.013 kb on + strand, within IAI47_01885at 414.013 kb on + strand, within IAI47_01885at 414.014 kb on - strand, within IAI47_01885at 414.014 kb on - strand, within IAI47_01885at 414.014 kb on - strand, within IAI47_01885at 414.014 kb on - strand, within IAI47_01885at 414.022 kb on + strand, within IAI47_01885at 414.022 kb on + strand, within IAI47_01885at 414.106 kb on + strand, within IAI47_01885at 414.106 kb on + strand, within IAI47_01885at 414.107 kb on - strand, within IAI47_01885at 414.107 kb on - strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strandat 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.144 kb on + strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.145 kb on - strand, within IAI47_01885at 414.147 kb on + strand, within IAI47_01885at 414.147 kb on + strand, within IAI47_01885at 414.147 kb on + strand, within IAI47_01885at 414.147 kb on + strand, within IAI47_01885at 414.147 kb on + strand, within IAI47_01885at 414.147 kb on + strand, within IAI47_01885at 414.147 kb on + strand, within IAI47_01885at 414.147 kb on + strand, within IAI47_01885at 414.147 kb on + strand, within IAI47_01885at 414.147 kb on + strand, within IAI47_01885at 414.147 kb on + strand, within IAI47_01885at 414.148 kb on - strand, within IAI47_01885at 414.157 kb on + strand, within IAI47_01885at 414.157 kb on + strand, within IAI47_01885at 414.157 kb on + strand, within IAI47_01885at 414.157 kb on + strand, within IAI47_01885at 414.157 kb on + strand, within IAI47_01885at 414.157 kb on + strand, within IAI47_01885at 414.158 kb on - strand, within IAI47_01885at 414.158 kb on - strand, within IAI47_01885at 414.158 kb on - strand, within IAI47_01885at 414.158 kb on - strand, within IAI47_01885at 414.217 kb on + strand, within IAI47_01885at 414.218 kb on - strand, within IAI47_01885at 414.235 kb on + strand, within IAI47_01885at 414.236 kb on - strand, within IAI47_01885at 414.250 kb on + strand, within IAI47_01885at 414.250 kb on + strand, within IAI47_01885at 414.250 kb on + strand, within IAI47_01885at 414.251 kb on - strand, within IAI47_01885at 414.251 kb on - strand, within IAI47_01885at 414.251 kb on - strand, within IAI47_01885at 414.251 kb on - strand, within IAI47_01885at 414.251 kb on - strand, within IAI47_01885at 414.262 kb on - strandat 414.291 kb on + strandat 414.291 kb on + strandat 414.291 kb on + strandat 414.374 kb on - strandat 414.374 kb on - strandat 414.383 kb on + strandat 414.405 kb on - strandat 414.405 kb on - strandat 414.405 kb on - strandat 414.436 kb on + strandat 414.436 kb on + strandat 414.436 kb on + strandat 414.436 kb on + strandat 414.437 kb on - strandat 414.437 kb on - strandat 414.437 kb on - strandat 414.437 kb on - strandat 414.437 kb on - strandat 414.437 kb on - strandat 414.437 kb on - strandat 414.441 kb on + strandat 414.441 kb on + strandat 414.441 kb on + strandat 414.441 kb on + strandat 414.441 kb on + strandat 414.441 kb on + strandat 414.441 kb on + strandat 414.442 kb on - strandat 414.442 kb on - strandat 414.442 kb on - strandat 414.442 kb on - strandat 414.471 kb on - strandat 414.471 kb on - strandat 414.478 kb on + strandat 414.478 kb on + strandat 414.478 kb on + strandat 414.479 kb on - strandat 414.479 kb on - strandat 414.479 kb on - strandat 414.488 kb on - strandat 414.521 kb on + strandat 414.521 kb on + strandat 414.522 kb on - strandat 414.533 kb on + strandat 414.534 kb on - strandat 414.534 kb on - strandat 414.534 kb on - strandat 414.556 kb on + strandat 414.556 kb on + strandat 414.557 kb on - strandat 414.557 kb on - strandat 414.606 kb on + strandat 414.606 kb on + strandat 414.607 kb on - strandat 414.608 kb on + strandat 414.609 kb on - strandat 414.641 kb on + strandat 414.716 kb on + strandat 415.291 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 5 uM, aerobic
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413,846 - IAI47_01885 0.58 -1.3
413,847 + IAI47_01885 0.58 +0.4
413,848 - IAI47_01885 0.58 +0.2
413,874 + IAI47_01885 0.60 -1.3
413,874 + IAI47_01885 0.60 +1.1
413,929 + IAI47_01885 0.64 +1.7
413,929 + IAI47_01885 0.64 -0.8
413,930 - IAI47_01885 0.64 -0.4
413,930 - IAI47_01885 0.64 +1.1
413,930 - IAI47_01885 0.64 -0.9
413,956 + IAI47_01885 0.66 -1.3
413,957 - IAI47_01885 0.66 -1.1
413,978 + IAI47_01885 0.68 +1.1
413,978 + IAI47_01885 0.68 -0.9
413,978 + IAI47_01885 0.68 -0.6
413,979 - IAI47_01885 0.68 +0.2
413,979 - IAI47_01885 0.68 +0.3
413,979 - IAI47_01885 0.68 -0.2
414,013 + IAI47_01885 0.71 +1.1
414,013 + IAI47_01885 0.71 +1.7
414,013 + IAI47_01885 0.71 +0.2
414,013 + IAI47_01885 0.71 -0.5
414,013 + IAI47_01885 0.71 -0.7
414,013 + IAI47_01885 0.71 -0.4
414,014 - IAI47_01885 0.71 -1.4
414,014 - IAI47_01885 0.71 -0.7
414,014 - IAI47_01885 0.71 -1.8
414,014 - IAI47_01885 0.71 -0.1
414,022 + IAI47_01885 0.71 -1.3
414,022 + IAI47_01885 0.71 -0.5
414,106 + IAI47_01885 0.78 +0.3
414,106 + IAI47_01885 0.78 +1.2
414,107 - IAI47_01885 0.78 -0.7
414,107 - IAI47_01885 0.78 -0.7
414,144 + IAI47_01885 0.81 -0.7
414,144 + IAI47_01885 0.81 -0.9
414,144 + IAI47_01885 0.81 -0.7
414,144 + IAI47_01885 0.81 +0.1
414,144 + IAI47_01885 0.81 +0.4
414,144 + IAI47_01885 0.81 +0.5
414,144 + IAI47_01885 0.81 -0.4
414,144 + IAI47_01885 0.81 +0.9
414,144 + IAI47_01885 0.81 -2.5
414,144 + IAI47_01885 0.81 -0.1
414,144 + +3.1
414,144 + IAI47_01885 0.81 +0.1
414,144 + IAI47_01885 0.81 -0.1
414,144 + IAI47_01885 0.81 -0.5
414,144 + IAI47_01885 0.81 -2.0
414,144 + IAI47_01885 0.81 -0.6
414,144 + IAI47_01885 0.81 +1.0
414,144 + IAI47_01885 0.81 +0.9
414,145 - IAI47_01885 0.81 +0.1
414,145 - IAI47_01885 0.81 +0.3
414,145 - IAI47_01885 0.81 -0.0
414,145 - IAI47_01885 0.81 +0.1
414,145 - IAI47_01885 0.81 -0.6
414,145 - IAI47_01885 0.81 -0.3
414,145 - IAI47_01885 0.81 +0.8
414,145 - IAI47_01885 0.81 -2.2
414,145 - IAI47_01885 0.81 +1.3
414,145 - IAI47_01885 0.81 +1.8
414,145 - IAI47_01885 0.81 -0.6
414,145 - IAI47_01885 0.81 -1.7
414,145 - IAI47_01885 0.81 +0.2
414,145 - IAI47_01885 0.81 -0.8
414,145 - IAI47_01885 0.81 -0.7
414,145 - IAI47_01885 0.81 +0.4
414,145 - IAI47_01885 0.81 +0.1
414,145 - IAI47_01885 0.81 -0.8
414,145 - IAI47_01885 0.81 +0.4
414,145 - IAI47_01885 0.81 +0.5
414,145 - IAI47_01885 0.81 -1.8
414,147 + IAI47_01885 0.81 -0.3
414,147 + IAI47_01885 0.81 +0.3
414,147 + IAI47_01885 0.81 +0.4
414,147 + IAI47_01885 0.81 +2.7
414,147 + IAI47_01885 0.81 +0.2
414,147 + IAI47_01885 0.81 -0.9
414,147 + IAI47_01885 0.81 -0.1
414,147 + IAI47_01885 0.81 -0.2
414,147 + IAI47_01885 0.81 +0.1
414,147 + IAI47_01885 0.81 +0.6
414,147 + IAI47_01885 0.81 -1.0
414,148 - IAI47_01885 0.81 +1.8
414,157 + IAI47_01885 0.82 +1.2
414,157 + IAI47_01885 0.82 +0.2
414,157 + IAI47_01885 0.82 -0.0
414,157 + IAI47_01885 0.82 -3.0
414,157 + IAI47_01885 0.82 -0.4
414,157 + IAI47_01885 0.82 -0.3
414,158 - IAI47_01885 0.82 +0.8
414,158 - IAI47_01885 0.82 +1.9
414,158 - IAI47_01885 0.82 -0.7
414,158 - IAI47_01885 0.82 +1.7
414,217 + IAI47_01885 0.87 +0.8
414,218 - IAI47_01885 0.87 +0.9
414,235 + IAI47_01885 0.88 -0.6
414,236 - IAI47_01885 0.88 +0.2
414,250 + IAI47_01885 0.89 -0.0
414,250 + IAI47_01885 0.89 -1.3
414,250 + IAI47_01885 0.89 -0.3
414,251 - IAI47_01885 0.89 +1.1
414,251 - IAI47_01885 0.89 +0.2
414,251 - IAI47_01885 0.89 +0.2
414,251 - IAI47_01885 0.89 +0.5
414,251 - IAI47_01885 0.89 +0.1
414,262 - -0.2
414,291 + -1.4
414,291 + -1.1
414,291 + -0.3
414,374 - +2.3
414,374 - +0.0
414,383 + -0.9
414,405 - -0.3
414,405 - +1.6
414,405 - +1.2
414,436 + -2.6
414,436 + -0.3
414,436 + +1.2
414,436 + +0.1
414,437 - -0.9
414,437 - +1.1
414,437 - -0.2
414,437 - +0.2
414,437 - -1.1
414,437 - -0.1
414,437 - -0.5
414,441 + +0.7
414,441 + +1.8
414,441 + -2.8
414,441 + -1.6
414,441 + -1.8
414,441 + -0.9
414,441 + -0.9
414,442 - +0.1
414,442 - -0.4
414,442 - +1.6
414,442 - -2.3
414,471 - -2.4
414,471 - +0.0
414,478 + +0.4
414,478 + -0.8
414,478 + +0.6
414,479 - +1.1
414,479 - +0.0
414,479 - +0.2
414,488 - +0.9
414,521 + -1.1
414,521 + -0.1
414,522 - -0.7
414,533 + -1.1
414,534 - +0.1
414,534 - -0.8
414,534 - -0.4
414,556 + -2.6
414,556 + -0.4
414,557 - +0.7
414,557 - -1.2
414,606 + -0.7
414,606 + -0.7
414,607 - -1.3
414,608 + +1.8
414,609 - +0.3
414,641 + -0.8
414,716 + +1.4
415,291 + -2.0

Or see this region's nucleotide sequence