Experiment: L-Serine (N); RCH2 media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19960 and EX31_RS19965 are separated by 11 nucleotides EX31_RS19965 and EX31_RS19970 are separated by 90 nucleotides EX31_RS19970 and EX31_RS19975 are separated by 39 nucleotides EX31_RS19975 and EX31_RS19980 are separated by 871 nucleotides
EX31_RS19960: EX31_RS19960 - HoxN/HupN/NixA family nickel/cobalt transporter, at 623,203 to 624,228
_RS19960
EX31_RS19965: EX31_RS19965 - hypothetical protein, at 624,240 to 624,569
_RS19965
EX31_RS19970: EX31_RS19970 - curlin, at 624,660 to 625,136
_RS19970
EX31_RS19975: EX31_RS19975 - curlin, at 625,176 to 625,664
_RS19975
EX31_RS19980: EX31_RS19980 - transcriptional regulator CsgD, at 626,536 to 627,186
_RS19980
Position (kb) 625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 624.190 kb on - strand at 624.208 kb on + strand at 624.260 kb on + strand at 624.260 kb on + strand at 624.260 kb on + strand at 624.260 kb on + strand at 624.260 kb on + strand at 624.260 kb on + strand at 624.261 kb on - strand at 624.297 kb on - strand, within EX31_RS19965 at 624.297 kb on - strand, within EX31_RS19965 at 624.308 kb on + strand, within EX31_RS19965 at 624.308 kb on + strand, within EX31_RS19965 at 624.308 kb on + strand, within EX31_RS19965 at 624.308 kb on + strand, within EX31_RS19965 at 624.309 kb on - strand, within EX31_RS19965 at 624.309 kb on - strand, within EX31_RS19965 at 624.309 kb on - strand, within EX31_RS19965 at 624.491 kb on + strand, within EX31_RS19965 at 624.491 kb on + strand, within EX31_RS19965 at 624.491 kb on + strand, within EX31_RS19965 at 624.491 kb on + strand, within EX31_RS19965 at 624.496 kb on + strand, within EX31_RS19965 at 624.496 kb on + strand, within EX31_RS19965 at 624.496 kb on + strand, within EX31_RS19965 at 624.496 kb on + strand, within EX31_RS19965 at 624.496 kb on + strand, within EX31_RS19965 at 624.496 kb on + strand, within EX31_RS19965 at 624.497 kb on - strand, within EX31_RS19965 at 624.497 kb on - strand, within EX31_RS19965 at 624.497 kb on - strand, within EX31_RS19965 at 624.519 kb on - strand, within EX31_RS19965 at 624.561 kb on + strand at 624.562 kb on - strand at 624.562 kb on - strand at 624.577 kb on - strand at 624.609 kb on + strand at 624.627 kb on + strand at 624.627 kb on + strand at 624.627 kb on + strand at 624.657 kb on + strand at 624.658 kb on - strand at 624.658 kb on - strand at 624.676 kb on + strand at 624.705 kb on - strand at 624.705 kb on - strand at 624.748 kb on + strand, within EX31_RS19970 at 624.748 kb on + strand, within EX31_RS19970 at 624.748 kb on + strand, within EX31_RS19970 at 624.748 kb on + strand, within EX31_RS19970 at 624.748 kb on + strand, within EX31_RS19970 at 624.748 kb on + strand, within EX31_RS19970 at 624.748 kb on + strand, within EX31_RS19970 at 624.748 kb on + strand, within EX31_RS19970 at 624.748 kb on + strand, within EX31_RS19970 at 624.748 kb on + strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.749 kb on - strand, within EX31_RS19970 at 624.753 kb on - strand, within EX31_RS19970 at 624.753 kb on - strand, within EX31_RS19970 at 624.820 kb on + strand, within EX31_RS19970 at 624.820 kb on + strand, within EX31_RS19970 at 624.820 kb on + strand, within EX31_RS19970 at 624.820 kb on + strand, within EX31_RS19970 at 624.820 kb on + strand, within EX31_RS19970 at 624.820 kb on + strand, within EX31_RS19970 at 624.820 kb on + strand, within EX31_RS19970 at 624.821 kb on - strand, within EX31_RS19970 at 624.821 kb on - strand, within EX31_RS19970 at 624.821 kb on - strand, within EX31_RS19970 at 624.834 kb on + strand, within EX31_RS19970 at 624.834 kb on + strand, within EX31_RS19970 at 624.881 kb on + strand, within EX31_RS19970 at 624.889 kb on + strand, within EX31_RS19970 at 624.971 kb on - strand, within EX31_RS19970 at 624.971 kb on - strand, within EX31_RS19970 at 625.037 kb on + strand, within EX31_RS19970 at 625.101 kb on + strand at 625.101 kb on + strand at 625.102 kb on - strand at 625.102 kb on - strand at 625.155 kb on + strand at 625.155 kb on + strand at 625.156 kb on - strand at 625.156 kb on - strand at 625.156 kb on - strand at 625.288 kb on + strand, within EX31_RS19975 at 625.288 kb on + strand, within EX31_RS19975 at 625.288 kb on + strand, within EX31_RS19975 at 625.288 kb on + strand, within EX31_RS19975 at 625.288 kb on + strand, within EX31_RS19975 at 625.289 kb on - strand, within EX31_RS19975 at 625.348 kb on - strand, within EX31_RS19975 at 625.362 kb on - strand, within EX31_RS19975 at 625.362 kb on - strand, within EX31_RS19975 at 625.362 kb on - strand, within EX31_RS19975 at 625.380 kb on + strand, within EX31_RS19975 at 625.382 kb on + strand, within EX31_RS19975 at 625.424 kb on + strand, within EX31_RS19975 at 625.425 kb on - strand, within EX31_RS19975 at 625.497 kb on - strand, within EX31_RS19975 at 625.677 kb on + strand at 625.679 kb on + strand at 625.680 kb on - strand at 625.960 kb on - strand at 626.046 kb on - strand at 626.046 kb on - strand at 626.046 kb on - strand at 626.046 kb on - strand at 626.109 kb on + strand at 626.109 kb on + strand at 626.110 kb on - strand at 626.123 kb on + strand at 626.123 kb on + strand at 626.123 kb on + strand at 626.124 kb on - strand at 626.165 kb on + strand at 626.177 kb on - strand at 626.177 kb on - strand at 626.177 kb on - strand at 626.177 kb on - strand at 626.186 kb on + strand at 626.225 kb on + strand at 626.226 kb on - strand at 626.236 kb on + strand at 626.236 kb on + strand at 626.268 kb on + strand at 626.268 kb on + strand at 626.323 kb on + strand at 626.432 kb on + strand at 626.441 kb on - strand at 626.467 kb on + strand at 626.486 kb on - strand at 626.595 kb on - strand at 626.664 kb on + strand, within EX31_RS19980
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; no shaking remove 624,190 - +0.1 624,208 + -1.6 624,260 + +0.5 624,260 + -0.1 624,260 + +1.4 624,260 + +1.6 624,260 + -0.6 624,260 + +0.6 624,261 - -0.1 624,297 - EX31_RS19965 0.17 +1.4 624,297 - EX31_RS19965 0.17 +0.0 624,308 + EX31_RS19965 0.21 -1.2 624,308 + EX31_RS19965 0.21 -0.6 624,308 + EX31_RS19965 0.21 +0.6 624,308 + EX31_RS19965 0.21 -3.6 624,309 - EX31_RS19965 0.21 +2.1 624,309 - EX31_RS19965 0.21 -0.7 624,309 - EX31_RS19965 0.21 +1.1 624,491 + EX31_RS19965 0.76 -1.7 624,491 + EX31_RS19965 0.76 +0.3 624,491 + EX31_RS19965 0.76 -0.5 624,491 + EX31_RS19965 0.76 -0.7 624,496 + EX31_RS19965 0.78 +1.7 624,496 + EX31_RS19965 0.78 -1.1 624,496 + EX31_RS19965 0.78 -1.5 624,496 + EX31_RS19965 0.78 +1.1 624,496 + EX31_RS19965 0.78 +1.3 624,496 + EX31_RS19965 0.78 +0.1 624,497 - EX31_RS19965 0.78 -0.5 624,497 - EX31_RS19965 0.78 +0.9 624,497 - EX31_RS19965 0.78 +0.4 624,519 - EX31_RS19965 0.85 -1.7 624,561 + +0.3 624,562 - +1.6 624,562 - +0.3 624,577 - +1.4 624,609 + +0.3 624,627 + -0.1 624,627 + -0.8 624,627 + +0.8 624,657 + +1.1 624,658 - +0.6 624,658 - +0.8 624,676 + +0.1 624,705 - -0.3 624,705 - -0.4 624,748 + EX31_RS19970 0.18 +0.1 624,748 + EX31_RS19970 0.18 +1.1 624,748 + EX31_RS19970 0.18 -0.1 624,748 + EX31_RS19970 0.18 -1.9 624,748 + EX31_RS19970 0.18 +2.7 624,748 + EX31_RS19970 0.18 +1.6 624,748 + EX31_RS19970 0.18 -0.9 624,748 + EX31_RS19970 0.18 +0.8 624,748 + EX31_RS19970 0.18 +0.4 624,748 + EX31_RS19970 0.18 +0.7 624,749 - EX31_RS19970 0.19 -1.3 624,749 - EX31_RS19970 0.19 -0.0 624,749 - EX31_RS19970 0.19 +0.8 624,749 - EX31_RS19970 0.19 +0.2 624,749 - EX31_RS19970 0.19 +0.4 624,749 - EX31_RS19970 0.19 -0.3 624,749 - EX31_RS19970 0.19 +0.2 624,749 - EX31_RS19970 0.19 +0.7 624,749 - EX31_RS19970 0.19 +0.6 624,749 - EX31_RS19970 0.19 -0.5 624,749 - EX31_RS19970 0.19 -0.1 624,749 - EX31_RS19970 0.19 -0.3 624,749 - EX31_RS19970 0.19 -0.1 624,749 - EX31_RS19970 0.19 -0.0 624,749 - EX31_RS19970 0.19 -1.4 624,749 - EX31_RS19970 0.19 -0.7 624,749 - EX31_RS19970 0.19 +0.3 624,753 - EX31_RS19970 0.19 -1.5 624,753 - EX31_RS19970 0.19 +0.5 624,820 + EX31_RS19970 0.34 -0.1 624,820 + EX31_RS19970 0.34 -1.5 624,820 + EX31_RS19970 0.34 +0.5 624,820 + EX31_RS19970 0.34 +0.1 624,820 + EX31_RS19970 0.34 -0.4 624,820 + EX31_RS19970 0.34 -0.9 624,820 + EX31_RS19970 0.34 +1.2 624,821 - EX31_RS19970 0.34 -0.2 624,821 - EX31_RS19970 0.34 -0.1 624,821 - EX31_RS19970 0.34 -0.1 624,834 + EX31_RS19970 0.36 +0.3 624,834 + EX31_RS19970 0.36 -1.1 624,881 + EX31_RS19970 0.46 +1.0 624,889 + EX31_RS19970 0.48 +1.3 624,971 - EX31_RS19970 0.65 +2.0 624,971 - EX31_RS19970 0.65 +0.0 625,037 + EX31_RS19970 0.79 +1.5 625,101 + +1.4 625,101 + +1.3 625,102 - +1.0 625,102 - -1.2 625,155 + -0.5 625,155 + -0.2 625,156 - +0.5 625,156 - +0.6 625,156 - -1.2 625,288 + EX31_RS19975 0.23 +1.3 625,288 + EX31_RS19975 0.23 +0.6 625,288 + EX31_RS19975 0.23 -1.1 625,288 + EX31_RS19975 0.23 +0.6 625,288 + EX31_RS19975 0.23 +0.1 625,289 - EX31_RS19975 0.23 +0.8 625,348 - EX31_RS19975 0.35 -0.1 625,362 - EX31_RS19975 0.38 +1.5 625,362 - EX31_RS19975 0.38 +0.4 625,362 - EX31_RS19975 0.38 -0.2 625,380 + EX31_RS19975 0.42 +1.1 625,382 + EX31_RS19975 0.42 +2.1 625,424 + EX31_RS19975 0.51 +2.8 625,425 - EX31_RS19975 0.51 +0.8 625,497 - EX31_RS19975 0.66 -0.5 625,677 + +0.7 625,679 + +0.2 625,680 - +0.1 625,960 - +0.5 626,046 - -1.7 626,046 - -0.3 626,046 - +0.0 626,046 - -0.2 626,109 + -1.0 626,109 + +0.1 626,110 - -0.1 626,123 + -1.0 626,123 + +1.1 626,123 + +1.4 626,124 - +1.2 626,165 + -0.5 626,177 - +1.7 626,177 - +1.1 626,177 - +0.1 626,177 - -0.2 626,186 + +0.1 626,225 + -0.9 626,226 - -0.2 626,236 + +0.3 626,236 + +0.5 626,268 + +1.7 626,268 + -0.2 626,323 + +1.9 626,432 + +0.9 626,441 - +0.4 626,467 + -0.4 626,486 - +1.5 626,595 - -0.4 626,664 + EX31_RS19980 0.20 -1.9
Or see this region's nucleotide sequence