Experiment: L-Serine (N); RCH2 media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03890 and EX31_RS03895 are separated by 231 nucleotides EX31_RS03895 and EX31_RS03900 are separated by 99 nucleotides
EX31_RS03890: EX31_RS03890 - Na+/H+ antiporter NhaA, at 291,638 to 292,813
_RS03890
EX31_RS03895: EX31_RS03895 - molecular chaperone DnaJ, at 293,045 to 294,178
_RS03895
EX31_RS03900: EX31_RS03900 - molecular chaperone DnaK, at 294,278 to 296,179
_RS03900
Position (kb) 293
294
295 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 292.082 kb on - strand, within EX31_RS03890 at 292.227 kb on - strand, within EX31_RS03890 at 292.290 kb on + strand, within EX31_RS03890 at 292.290 kb on + strand, within EX31_RS03890 at 292.476 kb on - strand, within EX31_RS03890 at 292.476 kb on - strand, within EX31_RS03890 at 292.480 kb on - strand, within EX31_RS03890 at 292.480 kb on - strand, within EX31_RS03890 at 292.480 kb on - strand, within EX31_RS03890 at 292.484 kb on + strand, within EX31_RS03890 at 292.485 kb on - strand, within EX31_RS03890 at 292.701 kb on + strand at 292.702 kb on - strand at 292.734 kb on - strand at 292.734 kb on - strand at 292.734 kb on - strand at 292.758 kb on - strand at 292.758 kb on - strand at 292.760 kb on + strand at 292.805 kb on - strand at 292.866 kb on + strand at 292.866 kb on + strand at 292.866 kb on + strand at 292.866 kb on + strand at 292.866 kb on + strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.867 kb on - strand at 292.879 kb on + strand at 292.879 kb on + strand at 292.879 kb on + strand at 292.879 kb on + strand at 292.880 kb on - strand at 292.880 kb on - strand at 292.880 kb on - strand at 292.880 kb on - strand at 292.880 kb on - strand at 292.880 kb on - strand at 293.012 kb on + strand at 293.013 kb on - strand at 293.013 kb on - strand at 293.013 kb on - strand at 293.013 kb on - strand at 293.013 kb on - strand at 294.486 kb on - strand, within EX31_RS03900 at 294.599 kb on - strand, within EX31_RS03900 at 294.599 kb on - strand, within EX31_RS03900 at 294.599 kb on - strand, within EX31_RS03900 at 294.599 kb on - strand, within EX31_RS03900 at 294.599 kb on - strand, within EX31_RS03900
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; no shaking remove 292,082 - EX31_RS03890 0.38 +0.2 292,227 - EX31_RS03890 0.50 -1.3 292,290 + EX31_RS03890 0.55 -1.0 292,290 + EX31_RS03890 0.55 +1.2 292,476 - EX31_RS03890 0.71 +0.6 292,476 - EX31_RS03890 0.71 -0.6 292,480 - EX31_RS03890 0.72 -0.1 292,480 - EX31_RS03890 0.72 -1.0 292,480 - EX31_RS03890 0.72 -0.4 292,484 + EX31_RS03890 0.72 +1.2 292,485 - EX31_RS03890 0.72 -1.2 292,701 + -0.2 292,702 - -0.0 292,734 - -1.9 292,734 - +3.8 292,734 - +0.2 292,758 - -0.5 292,758 - -0.3 292,760 + -0.6 292,805 - -0.8 292,866 + +0.9 292,866 + -1.3 292,866 + -0.2 292,866 + +0.8 292,866 + +1.2 292,867 - -0.3 292,867 - +1.9 292,867 - -0.5 292,867 - +0.9 292,867 - -1.7 292,867 - +0.7 292,867 - +0.8 292,867 - -0.6 292,867 - +0.2 292,867 - +0.7 292,867 - -2.6 292,867 - +0.4 292,867 - -0.7 292,867 - +0.0 292,867 - +0.7 292,867 - -0.0 292,867 - +1.0 292,867 - +0.7 292,867 - +0.2 292,879 + -0.7 292,879 + +0.3 292,879 + +0.3 292,879 + +1.1 292,880 - +0.3 292,880 - +0.7 292,880 - +0.2 292,880 - +1.0 292,880 - +0.1 292,880 - +0.8 293,012 + -0.3 293,013 - -0.2 293,013 - +0.0 293,013 - -0.3 293,013 - +0.8 293,013 - -1.1 294,486 - EX31_RS03900 0.11 -1.4 294,599 - EX31_RS03900 0.17 -0.1 294,599 - EX31_RS03900 0.17 -0.6 294,599 - EX31_RS03900 0.17 -0.3 294,599 - EX31_RS03900 0.17 -0.1 294,599 - EX31_RS03900 0.17 +1.2
Or see this region's nucleotide sequence