Strain Fitness in Rahnella sp. WP5 around EX31_RS01120

Experiment: L-Serine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01115 and EX31_RS01120 are separated by 351 nucleotidesEX31_RS01120 and EX31_RS01125 are separated by 138 nucleotides EX31_RS01115: EX31_RS01115 - ABC-F family ATP-binding cassette domain-containing protein, at 242,241 to 243,974 _RS01115 EX31_RS01120: EX31_RS01120 - MFS transporter, at 244,326 to 245,564 _RS01120 EX31_RS01125: EX31_RS01125 - alpha/beta hydrolase, at 245,703 to 246,626 _RS01125 Position (kb) 244 245 246Strain fitness (log2 ratio) -2 -1 0 1 2at 243.492 kb on + strand, within EX31_RS01115at 243.493 kb on - strand, within EX31_RS01115at 243.537 kb on + strand, within EX31_RS01115at 243.725 kb on + strand, within EX31_RS01115at 243.725 kb on + strand, within EX31_RS01115at 243.726 kb on - strand, within EX31_RS01115at 243.726 kb on - strand, within EX31_RS01115at 243.726 kb on - strand, within EX31_RS01115at 243.945 kb on + strandat 243.945 kb on + strandat 243.964 kb on - strandat 243.964 kb on - strandat 243.964 kb on - strandat 243.983 kb on - strandat 243.983 kb on - strandat 244.038 kb on + strandat 244.069 kb on + strandat 244.070 kb on - strandat 244.183 kb on + strandat 244.184 kb on - strandat 244.184 kb on - strandat 244.184 kb on - strandat 244.184 kb on - strandat 244.184 kb on - strandat 244.185 kb on + strandat 244.185 kb on + strandat 244.185 kb on + strandat 244.185 kb on + strandat 244.185 kb on + strandat 244.186 kb on - strandat 244.186 kb on - strandat 244.186 kb on - strandat 244.186 kb on - strandat 244.186 kb on - strandat 244.186 kb on - strandat 244.186 kb on - strandat 244.186 kb on - strandat 244.187 kb on + strandat 244.188 kb on - strandat 244.188 kb on - strandat 244.188 kb on - strandat 244.188 kb on - strandat 244.188 kb on - strandat 244.188 kb on - strandat 244.188 kb on - strandat 244.214 kb on - strandat 244.215 kb on + strandat 244.554 kb on - strand, within EX31_RS01120at 244.563 kb on + strand, within EX31_RS01120at 244.595 kb on + strand, within EX31_RS01120at 244.782 kb on + strand, within EX31_RS01120at 244.783 kb on - strand, within EX31_RS01120at 244.783 kb on - strand, within EX31_RS01120at 244.792 kb on - strand, within EX31_RS01120at 244.860 kb on + strand, within EX31_RS01120at 244.986 kb on + strand, within EX31_RS01120at 245.006 kb on + strand, within EX31_RS01120at 245.006 kb on + strand, within EX31_RS01120at 245.010 kb on + strand, within EX31_RS01120at 245.010 kb on + strand, within EX31_RS01120at 245.017 kb on + strand, within EX31_RS01120at 245.017 kb on + strand, within EX31_RS01120at 245.018 kb on - strand, within EX31_RS01120at 245.179 kb on - strand, within EX31_RS01120at 245.437 kb on + strand, within EX31_RS01120at 245.529 kb on + strandat 245.668 kb on + strandat 245.668 kb on + strandat 245.669 kb on - strandat 245.669 kb on - strandat 245.669 kb on - strandat 245.669 kb on - strandat 245.669 kb on - strandat 245.669 kb on - strandat 245.669 kb on - strandat 245.720 kb on + strandat 245.721 kb on - strandat 245.721 kb on - strandat 245.721 kb on - strandat 245.721 kb on - strandat 245.721 kb on - strandat 245.880 kb on + strand, within EX31_RS01125at 245.898 kb on - strand, within EX31_RS01125at 245.938 kb on + strand, within EX31_RS01125at 246.213 kb on + strand, within EX31_RS01125at 246.214 kb on - strand, within EX31_RS01125at 246.226 kb on + strand, within EX31_RS01125at 246.226 kb on + strand, within EX31_RS01125at 246.226 kb on + strand, within EX31_RS01125at 246.226 kb on + strand, within EX31_RS01125at 246.445 kb on + strand, within EX31_RS01125at 246.511 kb on + strand, within EX31_RS01125at 246.512 kb on - strand, within EX31_RS01125at 246.512 kb on - strand, within EX31_RS01125at 246.512 kb on - strand, within EX31_RS01125

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; no shaking
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243,492 + EX31_RS01115 0.72 +0.1
243,493 - EX31_RS01115 0.72 -0.4
243,537 + EX31_RS01115 0.75 +1.4
243,725 + EX31_RS01115 0.86 +1.0
243,725 + EX31_RS01115 0.86 -1.3
243,726 - EX31_RS01115 0.86 +1.0
243,726 - EX31_RS01115 0.86 +0.5
243,726 - EX31_RS01115 0.86 -1.0
243,945 + -0.4
243,945 + +0.4
243,964 - -1.2
243,964 - -0.4
243,964 - +0.5
243,983 - -0.3
243,983 - -1.6
244,038 + +0.4
244,069 + -1.7
244,070 - -0.5
244,183 + -0.8
244,184 - +1.2
244,184 - -0.9
244,184 - -0.3
244,184 - +2.0
244,184 - +1.2
244,185 + +2.4
244,185 + -1.1
244,185 + -2.3
244,185 + +0.6
244,185 + +0.4
244,186 - -0.4
244,186 - +0.4
244,186 - -1.0
244,186 - -1.1
244,186 - +0.2
244,186 - +0.7
244,186 - -0.6
244,186 - +0.1
244,187 + +1.0
244,188 - -0.9
244,188 - -0.7
244,188 - +1.5
244,188 - +1.0
244,188 - +0.7
244,188 - -0.5
244,188 - +1.0
244,214 - +0.5
244,215 + +0.1
244,554 - EX31_RS01120 0.18 -1.7
244,563 + EX31_RS01120 0.19 -0.4
244,595 + EX31_RS01120 0.22 -0.0
244,782 + EX31_RS01120 0.37 -0.4
244,783 - EX31_RS01120 0.37 +0.5
244,783 - EX31_RS01120 0.37 +0.1
244,792 - EX31_RS01120 0.38 -0.3
244,860 + EX31_RS01120 0.43 -0.2
244,986 + EX31_RS01120 0.53 +0.8
245,006 + EX31_RS01120 0.55 +0.0
245,006 + EX31_RS01120 0.55 +0.2
245,010 + EX31_RS01120 0.55 -1.4
245,010 + EX31_RS01120 0.55 -0.4
245,017 + EX31_RS01120 0.56 -0.4
245,017 + EX31_RS01120 0.56 -0.5
245,018 - EX31_RS01120 0.56 +1.0
245,179 - EX31_RS01120 0.69 -0.2
245,437 + EX31_RS01120 0.90 -0.9
245,529 + +0.6
245,668 + -0.2
245,668 + +0.1
245,669 - -0.2
245,669 - -0.8
245,669 - +1.0
245,669 - +0.5
245,669 - -0.0
245,669 - +1.1
245,669 - +1.0
245,720 + +0.4
245,721 - +1.0
245,721 - -0.2
245,721 - +1.1
245,721 - -0.7
245,721 - +0.5
245,880 + EX31_RS01125 0.19 +0.0
245,898 - EX31_RS01125 0.21 -1.3
245,938 + EX31_RS01125 0.25 +0.1
246,213 + EX31_RS01125 0.55 -0.7
246,214 - EX31_RS01125 0.55 +0.4
246,226 + EX31_RS01125 0.57 +1.6
246,226 + EX31_RS01125 0.57 -1.4
246,226 + EX31_RS01125 0.57 +0.6
246,226 + EX31_RS01125 0.57 +1.5
246,445 + EX31_RS01125 0.80 -0.0
246,511 + EX31_RS01125 0.87 -0.1
246,512 - EX31_RS01125 0.88 +0.0
246,512 - EX31_RS01125 0.88 +0.1
246,512 - EX31_RS01125 0.88 +0.5

Or see this region's nucleotide sequence