Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02486 and CCNA_02487 are separated by 103 nucleotides CCNA_02487 and CCNA_02488 are separated by 6 nucleotides CCNA_02488 and CCNA_02489 overlap by 1 nucleotides
CCNA_02486: CCNA_02486 - AraC-family transcriptional regulator, at 2,634,163 to 2,635,053
_02486
CCNA_02487: CCNA_02487 - 4-hydroxybenzoate 3-monooxygenase, at 2,635,157 to 2,636,377
_02487
CCNA_02488: CCNA_02488 - acetate/3-ketoacid CoA transferase, subunit A, at 2,636,384 to 2,637,121
_02488
CCNA_02489: CCNA_02489 - acetate/3-ketoacid CoA transferase, subunit B, at 2,637,121 to 2,637,768
_02489
Position (kb)
2635
2636
2637 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2634.163 kb on - strand at 2634.233 kb on + strand at 2634.269 kb on - strand, within CCNA_02486 at 2634.276 kb on - strand, within CCNA_02486 at 2634.328 kb on - strand, within CCNA_02486 at 2634.343 kb on + strand, within CCNA_02486 at 2634.346 kb on - strand, within CCNA_02486 at 2634.351 kb on - strand, within CCNA_02486 at 2634.351 kb on - strand, within CCNA_02486 at 2634.355 kb on + strand, within CCNA_02486 at 2634.361 kb on - strand, within CCNA_02486 at 2634.424 kb on - strand, within CCNA_02486 at 2634.431 kb on - strand, within CCNA_02486 at 2634.442 kb on + strand, within CCNA_02486 at 2634.455 kb on + strand, within CCNA_02486 at 2634.458 kb on - strand, within CCNA_02486 at 2634.502 kb on - strand, within CCNA_02486 at 2634.532 kb on - strand, within CCNA_02486 at 2634.565 kb on - strand, within CCNA_02486 at 2634.591 kb on - strand, within CCNA_02486 at 2634.622 kb on - strand, within CCNA_02486 at 2634.622 kb on - strand, within CCNA_02486 at 2634.622 kb on - strand, within CCNA_02486 at 2634.622 kb on - strand, within CCNA_02486 at 2634.657 kb on - strand, within CCNA_02486 at 2634.664 kb on - strand, within CCNA_02486 at 2634.741 kb on + strand, within CCNA_02486 at 2634.757 kb on + strand, within CCNA_02486 at 2634.757 kb on + strand, within CCNA_02486 at 2634.762 kb on + strand, within CCNA_02486 at 2634.765 kb on - strand, within CCNA_02486 at 2634.765 kb on - strand, within CCNA_02486 at 2634.900 kb on - strand, within CCNA_02486 at 2634.910 kb on - strand, within CCNA_02486 at 2634.920 kb on - strand, within CCNA_02486 at 2635.084 kb on + strand at 2635.110 kb on - strand at 2635.119 kb on + strand at 2635.119 kb on + strand at 2635.119 kb on + strand at 2635.129 kb on + strand at 2635.152 kb on - strand at 2635.154 kb on + strand at 2635.154 kb on + strand at 2635.154 kb on + strand at 2635.162 kb on - strand at 2635.162 kb on - strand at 2635.162 kb on - strand at 2635.162 kb on - strand at 2635.162 kb on - strand at 2635.162 kb on - strand at 2635.162 kb on - strand at 2635.162 kb on - strand at 2635.175 kb on + strand at 2635.220 kb on - strand at 2635.278 kb on - strand at 2635.304 kb on + strand, within CCNA_02487 at 2635.304 kb on + strand, within CCNA_02487 at 2635.311 kb on - strand, within CCNA_02487 at 2635.312 kb on - strand, within CCNA_02487 at 2635.324 kb on - strand, within CCNA_02487 at 2635.337 kb on + strand, within CCNA_02487 at 2635.351 kb on + strand, within CCNA_02487 at 2635.356 kb on + strand, within CCNA_02487 at 2635.400 kb on + strand, within CCNA_02487 at 2635.402 kb on + strand, within CCNA_02487 at 2635.410 kb on - strand, within CCNA_02487 at 2635.412 kb on + strand, within CCNA_02487 at 2635.414 kb on - strand, within CCNA_02487 at 2635.464 kb on + strand, within CCNA_02487 at 2635.495 kb on + strand, within CCNA_02487 at 2635.531 kb on - strand, within CCNA_02487 at 2635.536 kb on + strand, within CCNA_02487 at 2635.536 kb on + strand, within CCNA_02487 at 2635.631 kb on - strand, within CCNA_02487 at 2635.718 kb on + strand, within CCNA_02487 at 2635.720 kb on + strand, within CCNA_02487 at 2635.727 kb on + strand, within CCNA_02487 at 2635.728 kb on + strand, within CCNA_02487 at 2635.728 kb on + strand, within CCNA_02487 at 2635.736 kb on - strand, within CCNA_02487 at 2635.798 kb on + strand, within CCNA_02487 at 2635.868 kb on + strand, within CCNA_02487 at 2635.897 kb on + strand, within CCNA_02487 at 2635.938 kb on + strand, within CCNA_02487 at 2636.000 kb on + strand, within CCNA_02487 at 2636.008 kb on - strand, within CCNA_02487 at 2636.013 kb on - strand, within CCNA_02487 at 2636.086 kb on + strand, within CCNA_02487 at 2636.093 kb on + strand, within CCNA_02487 at 2636.101 kb on - strand, within CCNA_02487 at 2636.118 kb on + strand, within CCNA_02487 at 2636.163 kb on + strand, within CCNA_02487 at 2636.208 kb on - strand, within CCNA_02487 at 2636.214 kb on - strand, within CCNA_02487 at 2636.244 kb on + strand, within CCNA_02487 at 2636.259 kb on + strand at 2636.282 kb on - strand at 2636.311 kb on + strand at 2636.311 kb on + strand at 2636.311 kb on + strand at 2636.335 kb on + strand at 2636.342 kb on - strand at 2636.361 kb on + strand at 2636.374 kb on + strand at 2636.380 kb on - strand at 2636.389 kb on - strand at 2636.389 kb on - strand at 2636.392 kb on - strand at 2636.408 kb on + strand at 2636.416 kb on - strand at 2636.416 kb on - strand at 2636.429 kb on + strand at 2636.429 kb on + strand at 2636.429 kb on + strand at 2636.429 kb on + strand at 2636.437 kb on - strand at 2636.437 kb on - strand at 2636.437 kb on - strand at 2636.437 kb on - strand at 2636.437 kb on - strand at 2636.437 kb on - strand at 2636.454 kb on + strand at 2636.459 kb on + strand, within CCNA_02488 at 2636.467 kb on - strand, within CCNA_02488 at 2636.475 kb on + strand, within CCNA_02488 at 2636.510 kb on - strand, within CCNA_02488 at 2636.521 kb on - strand, within CCNA_02488 at 2636.529 kb on - strand, within CCNA_02488 at 2636.546 kb on - strand, within CCNA_02488 at 2636.591 kb on + strand, within CCNA_02488 at 2636.599 kb on - strand, within CCNA_02488 at 2636.666 kb on - strand, within CCNA_02488 at 2636.757 kb on - strand, within CCNA_02488 at 2636.777 kb on + strand, within CCNA_02488 at 2636.788 kb on + strand, within CCNA_02488 at 2636.798 kb on + strand, within CCNA_02488 at 2636.817 kb on + strand, within CCNA_02488 at 2636.958 kb on - strand, within CCNA_02488 at 2636.966 kb on + strand, within CCNA_02488 at 2636.967 kb on - strand, within CCNA_02488 at 2636.985 kb on + strand, within CCNA_02488 at 2637.017 kb on + strand, within CCNA_02488 at 2637.095 kb on - strand at 2637.102 kb on + strand at 2637.122 kb on - strand at 2637.123 kb on + strand at 2637.255 kb on - strand, within CCNA_02489 at 2637.281 kb on - strand, within CCNA_02489 at 2637.307 kb on + strand, within CCNA_02489 at 2637.310 kb on - strand, within CCNA_02489 at 2637.313 kb on + strand, within CCNA_02489 at 2637.315 kb on - strand, within CCNA_02489 at 2637.316 kb on - strand, within CCNA_02489 at 2637.318 kb on + strand, within CCNA_02489 at 2637.326 kb on - strand, within CCNA_02489 at 2637.326 kb on - strand, within CCNA_02489 at 2637.341 kb on + strand, within CCNA_02489 at 2637.341 kb on + strand, within CCNA_02489 at 2637.349 kb on - strand, within CCNA_02489 at 2637.349 kb on - strand, within CCNA_02489 at 2637.349 kb on - strand, within CCNA_02489 at 2637.355 kb on + strand, within CCNA_02489 at 2637.372 kb on - strand, within CCNA_02489 at 2637.376 kb on + strand, within CCNA_02489 at 2637.376 kb on + strand, within CCNA_02489 at 2637.376 kb on + strand, within CCNA_02489 at 2637.376 kb on + strand, within CCNA_02489
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 2,634,163 - +1.6 2,634,233 + -1.4 2,634,269 - CCNA_02486 0.12 -1.9 2,634,276 - CCNA_02486 0.13 -0.1 2,634,328 - CCNA_02486 0.19 +0.9 2,634,343 + CCNA_02486 0.20 -1.4 2,634,346 - CCNA_02486 0.21 -0.7 2,634,351 - CCNA_02486 0.21 -0.3 2,634,351 - CCNA_02486 0.21 -1.9 2,634,355 + CCNA_02486 0.22 -0.2 2,634,361 - CCNA_02486 0.22 -0.9 2,634,424 - CCNA_02486 0.29 +0.6 2,634,431 - CCNA_02486 0.30 +0.5 2,634,442 + CCNA_02486 0.31 -1.9 2,634,455 + CCNA_02486 0.33 -1.1 2,634,458 - CCNA_02486 0.33 -0.9 2,634,502 - CCNA_02486 0.38 +0.0 2,634,532 - CCNA_02486 0.41 -0.2 2,634,565 - CCNA_02486 0.45 +0.5 2,634,591 - CCNA_02486 0.48 +0.3 2,634,622 - CCNA_02486 0.52 +0.9 2,634,622 - CCNA_02486 0.52 +0.9 2,634,622 - CCNA_02486 0.52 -2.3 2,634,622 - CCNA_02486 0.52 +0.8 2,634,657 - CCNA_02486 0.55 -0.8 2,634,664 - CCNA_02486 0.56 -1.4 2,634,741 + CCNA_02486 0.65 -0.9 2,634,757 + CCNA_02486 0.67 -0.9 2,634,757 + CCNA_02486 0.67 -1.0 2,634,762 + CCNA_02486 0.67 +2.9 2,634,765 - CCNA_02486 0.68 +0.7 2,634,765 - CCNA_02486 0.68 +0.5 2,634,900 - CCNA_02486 0.83 -1.5 2,634,910 - CCNA_02486 0.84 -1.8 2,634,920 - CCNA_02486 0.85 +1.1 2,635,084 + +0.1 2,635,110 - +0.1 2,635,119 + -0.2 2,635,119 + -0.6 2,635,119 + -0.9 2,635,129 + +0.5 2,635,152 - +0.5 2,635,154 + -0.6 2,635,154 + -0.1 2,635,154 + -1.4 2,635,162 - +1.2 2,635,162 - +0.3 2,635,162 - -1.4 2,635,162 - +0.1 2,635,162 - -0.0 2,635,162 - +2.5 2,635,162 - -1.4 2,635,162 - +0.1 2,635,175 + +0.8 2,635,220 - +0.2 2,635,278 - -0.8 2,635,304 + CCNA_02487 0.12 -0.4 2,635,304 + CCNA_02487 0.12 -0.4 2,635,311 - CCNA_02487 0.13 -1.4 2,635,312 - CCNA_02487 0.13 -0.1 2,635,324 - CCNA_02487 0.14 -0.6 2,635,337 + CCNA_02487 0.15 -0.6 2,635,351 + CCNA_02487 0.16 -0.6 2,635,356 + CCNA_02487 0.16 -0.0 2,635,400 + CCNA_02487 0.20 +0.8 2,635,402 + CCNA_02487 0.20 -2.0 2,635,410 - CCNA_02487 0.21 +1.2 2,635,412 + CCNA_02487 0.21 -0.1 2,635,414 - CCNA_02487 0.21 -0.7 2,635,464 + CCNA_02487 0.25 -1.1 2,635,495 + CCNA_02487 0.28 -0.7 2,635,531 - CCNA_02487 0.31 -1.1 2,635,536 + CCNA_02487 0.31 -1.2 2,635,536 + CCNA_02487 0.31 +0.7 2,635,631 - CCNA_02487 0.39 -0.2 2,635,718 + CCNA_02487 0.46 +1.2 2,635,720 + CCNA_02487 0.46 +0.6 2,635,727 + CCNA_02487 0.47 -0.4 2,635,728 + CCNA_02487 0.47 -2.3 2,635,728 + CCNA_02487 0.47 -0.6 2,635,736 - CCNA_02487 0.47 +0.5 2,635,798 + CCNA_02487 0.52 -0.8 2,635,868 + CCNA_02487 0.58 +0.1 2,635,897 + CCNA_02487 0.61 +0.4 2,635,938 + CCNA_02487 0.64 +1.7 2,636,000 + CCNA_02487 0.69 -2.3 2,636,008 - CCNA_02487 0.70 -1.3 2,636,013 - CCNA_02487 0.70 +1.9 2,636,086 + CCNA_02487 0.76 -0.7 2,636,093 + CCNA_02487 0.77 +1.2 2,636,101 - CCNA_02487 0.77 -0.4 2,636,118 + CCNA_02487 0.79 -2.5 2,636,163 + CCNA_02487 0.82 +1.5 2,636,208 - CCNA_02487 0.86 +0.9 2,636,214 - CCNA_02487 0.87 -2.6 2,636,244 + CCNA_02487 0.89 -2.2 2,636,259 + -1.9 2,636,282 - +1.3 2,636,311 + -1.7 2,636,311 + +0.5 2,636,311 + +0.6 2,636,335 + -0.4 2,636,342 - -0.3 2,636,361 + -1.0 2,636,374 + +1.3 2,636,380 - -1.1 2,636,389 - -1.2 2,636,389 - -0.6 2,636,392 - -0.1 2,636,408 + -0.1 2,636,416 - +0.5 2,636,416 - -1.3 2,636,429 + -1.9 2,636,429 + -2.4 2,636,429 + -1.6 2,636,429 + -0.7 2,636,437 - +0.1 2,636,437 - -1.0 2,636,437 - +1.4 2,636,437 - -0.2 2,636,437 - -0.2 2,636,437 - -0.1 2,636,454 + -0.5 2,636,459 + CCNA_02488 0.10 -0.2 2,636,467 - CCNA_02488 0.11 -0.4 2,636,475 + CCNA_02488 0.12 +0.9 2,636,510 - CCNA_02488 0.17 -2.1 2,636,521 - CCNA_02488 0.19 -1.2 2,636,529 - CCNA_02488 0.20 +0.7 2,636,546 - CCNA_02488 0.22 +0.2 2,636,591 + CCNA_02488 0.28 +0.9 2,636,599 - CCNA_02488 0.29 -0.4 2,636,666 - CCNA_02488 0.38 -1.6 2,636,757 - CCNA_02488 0.51 -0.6 2,636,777 + CCNA_02488 0.53 -0.5 2,636,788 + CCNA_02488 0.55 -0.7 2,636,798 + CCNA_02488 0.56 -1.2 2,636,817 + CCNA_02488 0.59 +1.5 2,636,958 - CCNA_02488 0.78 -0.2 2,636,966 + CCNA_02488 0.79 +1.5 2,636,967 - CCNA_02488 0.79 -0.5 2,636,985 + CCNA_02488 0.81 -1.7 2,637,017 + CCNA_02488 0.86 +1.5 2,637,095 - -1.4 2,637,102 + -0.9 2,637,122 - +2.4 2,637,123 + +0.1 2,637,255 - CCNA_02489 0.21 +0.0 2,637,281 - CCNA_02489 0.25 -0.4 2,637,307 + CCNA_02489 0.29 -0.6 2,637,310 - CCNA_02489 0.29 -0.5 2,637,313 + CCNA_02489 0.30 +0.9 2,637,315 - CCNA_02489 0.30 -0.4 2,637,316 - CCNA_02489 0.30 -1.3 2,637,318 + CCNA_02489 0.30 -0.3 2,637,326 - CCNA_02489 0.32 -0.2 2,637,326 - CCNA_02489 0.32 -0.1 2,637,341 + CCNA_02489 0.34 +0.4 2,637,341 + CCNA_02489 0.34 -1.1 2,637,349 - CCNA_02489 0.35 +0.5 2,637,349 - CCNA_02489 0.35 +0.1 2,637,349 - CCNA_02489 0.35 -1.4 2,637,355 + CCNA_02489 0.36 +1.2 2,637,372 - CCNA_02489 0.39 -2.1 2,637,376 + CCNA_02489 0.39 +0.1 2,637,376 + CCNA_02489 0.39 -0.6 2,637,376 + CCNA_02489 0.39 -1.2 2,637,376 + CCNA_02489 0.39 -0.8
Or see this region's nucleotide sequence