Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01915

Experiment: L-Citrulline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01913 and CCNA_01914 are separated by 94 nucleotidesCCNA_01914 and CCNA_01915 overlap by 4 nucleotidesCCNA_01915 and CCNA_03957 overlap by 8 nucleotidesCCNA_03957 and CCNA_01916 overlap by 29 nucleotides CCNA_01913: CCNA_01913 - MarR-family transcriptional regulator, at 2,056,542 to 2,056,922 _01913 CCNA_01914: CCNA_01914 - 16S rRNA m(2)G 1207 methyltransferase RsmC, at 2,057,017 to 2,057,925 _01914 CCNA_01915: CCNA_01915 - ribosomal small subunit pseudouridine synthase A, at 2,057,922 to 2,058,662 _01915 CCNA_03957: CCNA_03957 - SirA/YedF/YeeD family regulatory protein, at 2,058,655 to 2,058,888 _03957 CCNA_01916: CCNA_01916 - ribonuclease BN, at 2,058,860 to 2,059,846 _01916 Position (kb) 2057 2058 2059Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2056.941 kb on + strandat 2056.968 kb on + strandat 2057.002 kb on + strandat 2057.017 kb on - strandat 2057.038 kb on + strandat 2057.038 kb on + strandat 2057.045 kb on - strandat 2057.076 kb on + strandat 2057.092 kb on - strandat 2057.103 kb on + strandat 2057.114 kb on + strand, within CCNA_01914at 2057.119 kb on + strand, within CCNA_01914at 2057.127 kb on - strand, within CCNA_01914at 2057.129 kb on - strand, within CCNA_01914at 2057.223 kb on + strand, within CCNA_01914at 2057.235 kb on + strand, within CCNA_01914at 2057.245 kb on + strand, within CCNA_01914at 2057.245 kb on - strand, within CCNA_01914at 2057.301 kb on + strand, within CCNA_01914at 2057.303 kb on + strand, within CCNA_01914at 2057.310 kb on + strand, within CCNA_01914at 2057.345 kb on + strand, within CCNA_01914at 2057.353 kb on - strand, within CCNA_01914at 2057.375 kb on + strand, within CCNA_01914at 2057.382 kb on - strand, within CCNA_01914at 2057.389 kb on + strand, within CCNA_01914at 2057.402 kb on - strand, within CCNA_01914at 2057.438 kb on + strand, within CCNA_01914at 2057.446 kb on - strand, within CCNA_01914at 2057.487 kb on + strand, within CCNA_01914at 2057.487 kb on + strand, within CCNA_01914at 2057.487 kb on + strand, within CCNA_01914at 2057.488 kb on + strand, within CCNA_01914at 2057.495 kb on - strand, within CCNA_01914at 2057.495 kb on - strand, within CCNA_01914at 2057.537 kb on + strand, within CCNA_01914at 2057.576 kb on + strand, within CCNA_01914at 2057.578 kb on - strand, within CCNA_01914at 2057.595 kb on + strand, within CCNA_01914at 2057.615 kb on + strand, within CCNA_01914at 2057.623 kb on - strand, within CCNA_01914at 2057.686 kb on + strand, within CCNA_01914at 2057.686 kb on + strand, within CCNA_01914at 2057.703 kb on - strand, within CCNA_01914at 2057.745 kb on + strand, within CCNA_01914at 2057.782 kb on + strand, within CCNA_01914at 2057.790 kb on - strand, within CCNA_01914at 2057.791 kb on + strand, within CCNA_01914at 2057.791 kb on - strand, within CCNA_01914at 2057.793 kb on + strand, within CCNA_01914at 2057.799 kb on + strand, within CCNA_01914at 2057.799 kb on + strand, within CCNA_01914at 2057.816 kb on - strand, within CCNA_01914at 2057.825 kb on + strand, within CCNA_01914at 2057.835 kb on + strandat 2057.843 kb on + strandat 2057.846 kb on - strandat 2057.870 kb on + strandat 2057.880 kb on + strandat 2057.884 kb on + strandat 2057.915 kb on - strandat 2057.932 kb on - strandat 2057.981 kb on + strandat 2057.990 kb on + strandat 2057.991 kb on + strandat 2058.018 kb on + strand, within CCNA_01915at 2058.044 kb on - strand, within CCNA_01915at 2058.137 kb on + strand, within CCNA_01915at 2058.191 kb on + strand, within CCNA_01915at 2058.204 kb on - strand, within CCNA_01915at 2058.229 kb on + strand, within CCNA_01915at 2058.251 kb on - strand, within CCNA_01915at 2058.253 kb on + strand, within CCNA_01915at 2058.263 kb on + strand, within CCNA_01915at 2058.263 kb on + strand, within CCNA_01915at 2058.346 kb on - strand, within CCNA_01915at 2058.346 kb on - strand, within CCNA_01915at 2058.346 kb on - strand, within CCNA_01915at 2058.365 kb on - strand, within CCNA_01915at 2058.365 kb on - strand, within CCNA_01915at 2058.369 kb on + strand, within CCNA_01915at 2058.369 kb on + strand, within CCNA_01915at 2058.377 kb on - strand, within CCNA_01915at 2058.451 kb on + strand, within CCNA_01915at 2058.459 kb on - strand, within CCNA_01915at 2058.475 kb on - strand, within CCNA_01915at 2058.505 kb on + strand, within CCNA_01915at 2058.513 kb on - strand, within CCNA_01915at 2058.513 kb on - strand, within CCNA_01915at 2058.515 kb on - strand, within CCNA_01915at 2058.639 kb on + strandat 2058.644 kb on + strandat 2058.652 kb on - strandat 2058.707 kb on + strand, within CCNA_03957at 2058.707 kb on + strand, within CCNA_03957at 2058.707 kb on + strand, within CCNA_03957at 2058.707 kb on + strand, within CCNA_03957at 2058.707 kb on + strand, within CCNA_03957at 2058.707 kb on + strand, within CCNA_03957at 2058.707 kb on + strand, within CCNA_03957at 2058.715 kb on - strand, within CCNA_03957at 2058.725 kb on + strand, within CCNA_03957at 2058.725 kb on - strand, within CCNA_03957at 2058.762 kb on + strand, within CCNA_03957at 2058.762 kb on + strand, within CCNA_03957at 2058.782 kb on - strand, within CCNA_03957at 2058.788 kb on - strand, within CCNA_03957at 2058.808 kb on + strand, within CCNA_03957at 2058.816 kb on - strand, within CCNA_03957at 2058.816 kb on - strand, within CCNA_03957at 2058.942 kb on + strandat 2058.942 kb on + strandat 2058.950 kb on - strandat 2058.964 kb on - strand, within CCNA_01916at 2058.990 kb on + strand, within CCNA_01916at 2058.990 kb on + strand, within CCNA_01916at 2058.998 kb on - strand, within CCNA_01916at 2059.069 kb on - strand, within CCNA_01916at 2059.137 kb on - strand, within CCNA_01916at 2059.167 kb on + strand, within CCNA_01916at 2059.167 kb on + strand, within CCNA_01916at 2059.175 kb on - strand, within CCNA_01916at 2059.212 kb on + strand, within CCNA_01916at 2059.239 kb on - strand, within CCNA_01916at 2059.239 kb on - strand, within CCNA_01916at 2059.239 kb on - strand, within CCNA_01916at 2059.242 kb on + strand, within CCNA_01916at 2059.277 kb on - strand, within CCNA_01916at 2059.277 kb on - strand, within CCNA_01916at 2059.280 kb on - strandat 2059.290 kb on + strand, within CCNA_01916at 2059.311 kb on + strand, within CCNA_01916at 2059.311 kb on + strand, within CCNA_01916at 2059.319 kb on - strand, within CCNA_01916at 2059.319 kb on - strand, within CCNA_01916at 2059.346 kb on - strand, within CCNA_01916at 2059.374 kb on - strand, within CCNA_01916at 2059.396 kb on + strand, within CCNA_01916at 2059.460 kb on - strand, within CCNA_01916at 2059.472 kb on + strand, within CCNA_01916at 2059.480 kb on - strand, within CCNA_01916at 2059.487 kb on + strand, within CCNA_01916at 2059.505 kb on + strand, within CCNA_01916at 2059.505 kb on + strand, within CCNA_01916at 2059.513 kb on - strand, within CCNA_01916at 2059.513 kb on - strand, within CCNA_01916at 2059.518 kb on + strandat 2059.520 kb on - strand, within CCNA_01916at 2059.526 kb on - strand, within CCNA_01916at 2059.591 kb on + strand, within CCNA_01916at 2059.599 kb on + strand, within CCNA_01916at 2059.636 kb on + strand, within CCNA_01916at 2059.644 kb on - strand, within CCNA_01916

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
remove
2,056,941 + -0.6
2,056,968 + -0.8
2,057,002 + +1.1
2,057,017 - -0.9
2,057,038 + +0.5
2,057,038 + -0.2
2,057,045 - -0.3
2,057,076 + +0.1
2,057,092 - +0.5
2,057,103 + -0.5
2,057,114 + CCNA_01914 0.11 -0.2
2,057,119 + CCNA_01914 0.11 -0.3
2,057,127 - CCNA_01914 0.12 +1.0
2,057,129 - CCNA_01914 0.12 -0.7
2,057,223 + CCNA_01914 0.23 -0.2
2,057,235 + CCNA_01914 0.24 -1.7
2,057,245 + CCNA_01914 0.25 +0.3
2,057,245 - CCNA_01914 0.25 -0.5
2,057,301 + CCNA_01914 0.31 -0.8
2,057,303 + CCNA_01914 0.31 -0.3
2,057,310 + CCNA_01914 0.32 -0.3
2,057,345 + CCNA_01914 0.36 +1.0
2,057,353 - CCNA_01914 0.37 -1.0
2,057,375 + CCNA_01914 0.39 +0.4
2,057,382 - CCNA_01914 0.40 +2.1
2,057,389 + CCNA_01914 0.41 -0.1
2,057,402 - CCNA_01914 0.42 +1.3
2,057,438 + CCNA_01914 0.46 +0.9
2,057,446 - CCNA_01914 0.47 +0.7
2,057,487 + CCNA_01914 0.52 -0.2
2,057,487 + CCNA_01914 0.52 -0.3
2,057,487 + CCNA_01914 0.52 +0.1
2,057,488 + CCNA_01914 0.52 +0.3
2,057,495 - CCNA_01914 0.53 +0.9
2,057,495 - CCNA_01914 0.53 +1.0
2,057,537 + CCNA_01914 0.57 +0.5
2,057,576 + CCNA_01914 0.61 -0.6
2,057,578 - CCNA_01914 0.62 +2.5
2,057,595 + CCNA_01914 0.64 +2.5
2,057,615 + CCNA_01914 0.66 +0.3
2,057,623 - CCNA_01914 0.67 +0.8
2,057,686 + CCNA_01914 0.74 +0.5
2,057,686 + CCNA_01914 0.74 -1.2
2,057,703 - CCNA_01914 0.75 +0.0
2,057,745 + CCNA_01914 0.80 -0.3
2,057,782 + CCNA_01914 0.84 -0.2
2,057,790 - CCNA_01914 0.85 -0.8
2,057,791 + CCNA_01914 0.85 -0.2
2,057,791 - CCNA_01914 0.85 +0.0
2,057,793 + CCNA_01914 0.85 -0.4
2,057,799 + CCNA_01914 0.86 +0.6
2,057,799 + CCNA_01914 0.86 -0.0
2,057,816 - CCNA_01914 0.88 +0.5
2,057,825 + CCNA_01914 0.89 +0.0
2,057,835 + -0.4
2,057,843 + -0.3
2,057,846 - +0.4
2,057,870 + +0.2
2,057,880 + -0.5
2,057,884 + -0.3
2,057,915 - -0.8
2,057,932 - -2.4
2,057,981 + +1.2
2,057,990 + +1.2
2,057,991 + +0.2
2,058,018 + CCNA_01915 0.13 -2.0
2,058,044 - CCNA_01915 0.16 -0.3
2,058,137 + CCNA_01915 0.29 -1.3
2,058,191 + CCNA_01915 0.36 +0.5
2,058,204 - CCNA_01915 0.38 -1.6
2,058,229 + CCNA_01915 0.41 +0.7
2,058,251 - CCNA_01915 0.44 +0.3
2,058,253 + CCNA_01915 0.45 +1.5
2,058,263 + CCNA_01915 0.46 -0.5
2,058,263 + CCNA_01915 0.46 +0.0
2,058,346 - CCNA_01915 0.57 -1.4
2,058,346 - CCNA_01915 0.57 -0.6
2,058,346 - CCNA_01915 0.57 -0.8
2,058,365 - CCNA_01915 0.60 +0.7
2,058,365 - CCNA_01915 0.60 -0.1
2,058,369 + CCNA_01915 0.60 -0.0
2,058,369 + CCNA_01915 0.60 +0.1
2,058,377 - CCNA_01915 0.61 -0.8
2,058,451 + CCNA_01915 0.71 -0.7
2,058,459 - CCNA_01915 0.72 -1.5
2,058,475 - CCNA_01915 0.75 +1.5
2,058,505 + CCNA_01915 0.79 -0.9
2,058,513 - CCNA_01915 0.80 +1.0
2,058,513 - CCNA_01915 0.80 -0.1
2,058,515 - CCNA_01915 0.80 -0.5
2,058,639 + +0.7
2,058,644 + +1.1
2,058,652 - -0.2
2,058,707 + CCNA_03957 0.22 -1.4
2,058,707 + CCNA_03957 0.22 +1.9
2,058,707 + CCNA_03957 0.22 +0.3
2,058,707 + CCNA_03957 0.22 +0.3
2,058,707 + CCNA_03957 0.22 +0.6
2,058,707 + CCNA_03957 0.22 +0.4
2,058,707 + CCNA_03957 0.22 +1.5
2,058,715 - CCNA_03957 0.26 -0.5
2,058,725 + CCNA_03957 0.30 +0.2
2,058,725 - CCNA_03957 0.30 +0.0
2,058,762 + CCNA_03957 0.46 +0.9
2,058,762 + CCNA_03957 0.46 +1.1
2,058,782 - CCNA_03957 0.54 +1.9
2,058,788 - CCNA_03957 0.57 -0.1
2,058,808 + CCNA_03957 0.65 -0.5
2,058,816 - CCNA_03957 0.69 -1.3
2,058,816 - CCNA_03957 0.69 +0.7
2,058,942 + -0.5
2,058,942 + +0.5
2,058,950 - +4.5
2,058,964 - CCNA_01916 0.11 -0.1
2,058,990 + CCNA_01916 0.13 +1.7
2,058,990 + CCNA_01916 0.13 -0.5
2,058,998 - CCNA_01916 0.14 -0.8
2,059,069 - CCNA_01916 0.21 -0.5
2,059,137 - CCNA_01916 0.28 -1.4
2,059,167 + CCNA_01916 0.31 -0.4
2,059,167 + CCNA_01916 0.31 +0.3
2,059,175 - CCNA_01916 0.32 -0.2
2,059,212 + CCNA_01916 0.36 -0.9
2,059,239 - CCNA_01916 0.38 +0.2
2,059,239 - CCNA_01916 0.38 -0.7
2,059,239 - CCNA_01916 0.38 -2.0
2,059,242 + CCNA_01916 0.39 -0.2
2,059,277 - CCNA_01916 0.42 -0.4
2,059,277 - CCNA_01916 0.42 -0.6
2,059,280 - +3.5
2,059,290 + CCNA_01916 0.44 -0.9
2,059,311 + CCNA_01916 0.46 -0.1
2,059,311 + CCNA_01916 0.46 -0.3
2,059,319 - CCNA_01916 0.47 +1.1
2,059,319 - CCNA_01916 0.47 +0.2
2,059,346 - CCNA_01916 0.49 +0.4
2,059,374 - CCNA_01916 0.52 -0.3
2,059,396 + CCNA_01916 0.54 +1.5
2,059,460 - CCNA_01916 0.61 +0.1
2,059,472 + CCNA_01916 0.62 -1.1
2,059,480 - CCNA_01916 0.63 -0.8
2,059,487 + CCNA_01916 0.64 +0.0
2,059,505 + CCNA_01916 0.65 -0.1
2,059,505 + CCNA_01916 0.65 +1.5
2,059,513 - CCNA_01916 0.66 +2.1
2,059,513 - CCNA_01916 0.66 -0.6
2,059,518 + +0.9
2,059,520 - CCNA_01916 0.67 +1.4
2,059,526 - CCNA_01916 0.67 -0.4
2,059,591 + CCNA_01916 0.74 +1.0
2,059,599 + CCNA_01916 0.75 -0.0
2,059,636 + CCNA_01916 0.79 +0.2
2,059,644 - CCNA_01916 0.79 -0.4

Or see this region's nucleotide sequence