Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01889 and CCNA_01890 are separated by 242 nucleotides CCNA_01890 and CCNA_01891 are separated by 113 nucleotides
CCNA_01889: CCNA_01889 - long-chain-fatty-acid--CoA ligase, at 2,029,278 to 2,030,912
_01889
CCNA_01890: CCNA_01890 - enoyl-CoA hydratase/isomerase family protein, at 2,031,155 to 2,032,660
_01890
CCNA_01891: CCNA_01891 - enoyl-CoA hydratase/carnithine racemase, at 2,032,774 to 2,033,601
_01891
Position (kb)
2031
2032
2033 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2030.168 kb on + strand, within CCNA_01889 at 2030.168 kb on + strand, within CCNA_01889 at 2030.176 kb on - strand, within CCNA_01889 at 2030.176 kb on - strand, within CCNA_01889 at 2030.204 kb on - strand, within CCNA_01889 at 2030.234 kb on - strand, within CCNA_01889 at 2030.234 kb on - strand, within CCNA_01889 at 2030.322 kb on + strand, within CCNA_01889 at 2030.335 kb on + strand, within CCNA_01889 at 2030.363 kb on - strand, within CCNA_01889 at 2030.401 kb on + strand, within CCNA_01889 at 2030.433 kb on - strand, within CCNA_01889 at 2030.443 kb on - strand, within CCNA_01889 at 2030.446 kb on - strand, within CCNA_01889 at 2030.453 kb on + strand, within CCNA_01889 at 2030.538 kb on + strand, within CCNA_01889 at 2030.556 kb on - strand, within CCNA_01889 at 2030.638 kb on + strand, within CCNA_01889 at 2030.678 kb on - strand, within CCNA_01889 at 2030.697 kb on + strand, within CCNA_01889 at 2030.697 kb on + strand, within CCNA_01889 at 2030.697 kb on + strand, within CCNA_01889 at 2030.697 kb on + strand, within CCNA_01889 at 2030.697 kb on + strand, within CCNA_01889 at 2030.697 kb on + strand, within CCNA_01889 at 2030.697 kb on + strand, within CCNA_01889 at 2030.697 kb on + strand, within CCNA_01889 at 2030.705 kb on - strand, within CCNA_01889 at 2030.705 kb on - strand, within CCNA_01889 at 2030.705 kb on - strand, within CCNA_01889 at 2030.705 kb on - strand, within CCNA_01889 at 2030.705 kb on - strand, within CCNA_01889 at 2030.725 kb on + strand, within CCNA_01889 at 2030.880 kb on + strand at 2030.887 kb on + strand at 2030.895 kb on - strand at 2030.958 kb on + strand at 2030.958 kb on + strand at 2030.966 kb on - strand at 2030.966 kb on - strand at 2030.969 kb on + strand at 2030.978 kb on - strand at 2030.983 kb on + strand at 2030.983 kb on + strand at 2031.012 kb on + strand at 2031.022 kb on - strand at 2031.038 kb on + strand at 2031.038 kb on + strand at 2031.038 kb on + strand at 2031.046 kb on - strand at 2031.119 kb on + strand at 2031.142 kb on + strand at 2031.171 kb on + strand at 2031.268 kb on + strand at 2031.269 kb on - strand at 2031.333 kb on + strand, within CCNA_01890 at 2031.355 kb on + strand at 2031.371 kb on - strand, within CCNA_01890 at 2031.391 kb on + strand, within CCNA_01890 at 2031.508 kb on - strand, within CCNA_01890 at 2031.514 kb on - strand, within CCNA_01890 at 2031.514 kb on - strand, within CCNA_01890 at 2031.530 kb on + strand, within CCNA_01890 at 2031.554 kb on + strand, within CCNA_01890 at 2031.554 kb on + strand, within CCNA_01890 at 2031.667 kb on - strand, within CCNA_01890 at 2031.667 kb on - strand, within CCNA_01890 at 2031.696 kb on - strand, within CCNA_01890 at 2031.708 kb on - strand, within CCNA_01890 at 2031.787 kb on + strand, within CCNA_01890 at 2031.900 kb on + strand, within CCNA_01890 at 2031.903 kb on - strand, within CCNA_01890 at 2031.946 kb on - strand, within CCNA_01890 at 2031.946 kb on - strand, within CCNA_01890 at 2031.965 kb on + strand, within CCNA_01890 at 2031.971 kb on + strand, within CCNA_01890 at 2031.971 kb on + strand, within CCNA_01890 at 2031.971 kb on + strand, within CCNA_01890 at 2031.971 kb on + strand, within CCNA_01890 at 2031.976 kb on + strand, within CCNA_01890 at 2031.978 kb on + strand, within CCNA_01890 at 2031.978 kb on - strand, within CCNA_01890 at 2031.979 kb on - strand, within CCNA_01890 at 2031.979 kb on - strand, within CCNA_01890 at 2031.979 kb on - strand, within CCNA_01890 at 2031.979 kb on - strand, within CCNA_01890 at 2031.979 kb on - strand, within CCNA_01890 at 2031.979 kb on - strand, within CCNA_01890 at 2031.979 kb on - strand, within CCNA_01890 at 2031.979 kb on - strand, within CCNA_01890 at 2031.979 kb on - strand, within CCNA_01890 at 2032.001 kb on + strand, within CCNA_01890 at 2032.001 kb on + strand, within CCNA_01890 at 2032.001 kb on + strand, within CCNA_01890 at 2032.001 kb on + strand, within CCNA_01890 at 2032.001 kb on + strand, within CCNA_01890 at 2032.009 kb on - strand, within CCNA_01890 at 2032.128 kb on - strand, within CCNA_01890 at 2032.207 kb on - strand, within CCNA_01890 at 2032.212 kb on - strand, within CCNA_01890 at 2032.227 kb on + strand, within CCNA_01890 at 2032.247 kb on - strand, within CCNA_01890 at 2032.297 kb on - strand, within CCNA_01890 at 2032.306 kb on - strand, within CCNA_01890 at 2032.362 kb on - strand, within CCNA_01890 at 2032.362 kb on - strand, within CCNA_01890 at 2032.365 kb on + strand, within CCNA_01890 at 2032.417 kb on + strand, within CCNA_01890 at 2032.452 kb on + strand, within CCNA_01890 at 2032.482 kb on + strand, within CCNA_01890 at 2032.516 kb on - strand at 2032.516 kb on - strand at 2032.540 kb on + strand at 2032.554 kb on + strand at 2032.554 kb on + strand at 2032.593 kb on + strand at 2032.593 kb on + strand at 2032.601 kb on - strand at 2032.601 kb on - strand at 2032.813 kb on + strand at 2032.841 kb on + strand at 2032.851 kb on + strand at 2032.851 kb on + strand at 2032.859 kb on + strand, within CCNA_01891 at 2032.859 kb on + strand, within CCNA_01891 at 2032.859 kb on - strand, within CCNA_01891 at 2032.859 kb on - strand, within CCNA_01891 at 2032.864 kb on + strand, within CCNA_01891 at 2032.867 kb on - strand, within CCNA_01891 at 2032.872 kb on - strand, within CCNA_01891 at 2032.872 kb on - strand, within CCNA_01891 at 2032.877 kb on - strand, within CCNA_01891 at 2032.877 kb on - strand, within CCNA_01891 at 2032.877 kb on - strand, within CCNA_01891 at 2032.901 kb on - strand, within CCNA_01891 at 2032.911 kb on + strand, within CCNA_01891 at 2032.929 kb on - strand, within CCNA_01891 at 2032.929 kb on - strand, within CCNA_01891 at 2033.073 kb on - strand, within CCNA_01891 at 2033.081 kb on - strand, within CCNA_01891 at 2033.187 kb on + strand at 2033.195 kb on - strand, within CCNA_01891 at 2033.214 kb on - strand, within CCNA_01891 at 2033.214 kb on - strand, within CCNA_01891 at 2033.214 kb on - strand, within CCNA_01891 at 2033.231 kb on - strand, within CCNA_01891 at 2033.327 kb on - strand, within CCNA_01891 at 2033.355 kb on - strand, within CCNA_01891 at 2033.380 kb on - strand, within CCNA_01891 at 2033.380 kb on - strand, within CCNA_01891 at 2033.384 kb on + strand, within CCNA_01891 at 2033.389 kb on + strand, within CCNA_01891 at 2033.392 kb on - strand, within CCNA_01891 at 2033.397 kb on - strand, within CCNA_01891 at 2033.402 kb on - strand, within CCNA_01891 at 2033.453 kb on - strand, within CCNA_01891 at 2033.567 kb on - strand at 2033.586 kb on - strand at 2033.586 kb on - strand at 2033.616 kb on + strand at 2033.618 kb on - strand at 2033.644 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 2,030,168 + CCNA_01889 0.54 +0.5 2,030,168 + CCNA_01889 0.54 -2.3 2,030,176 - CCNA_01889 0.55 +1.5 2,030,176 - CCNA_01889 0.55 -1.4 2,030,204 - CCNA_01889 0.57 +0.9 2,030,234 - CCNA_01889 0.58 -1.3 2,030,234 - CCNA_01889 0.58 +1.1 2,030,322 + CCNA_01889 0.64 +0.9 2,030,335 + CCNA_01889 0.65 +0.0 2,030,363 - CCNA_01889 0.66 +0.0 2,030,401 + CCNA_01889 0.69 +0.5 2,030,433 - CCNA_01889 0.71 -0.7 2,030,443 - CCNA_01889 0.71 +0.3 2,030,446 - CCNA_01889 0.71 +0.9 2,030,453 + CCNA_01889 0.72 +0.5 2,030,538 + CCNA_01889 0.77 +1.0 2,030,556 - CCNA_01889 0.78 -0.7 2,030,638 + CCNA_01889 0.83 +1.0 2,030,678 - CCNA_01889 0.86 -0.2 2,030,697 + CCNA_01889 0.87 +1.5 2,030,697 + CCNA_01889 0.87 +0.2 2,030,697 + CCNA_01889 0.87 -1.6 2,030,697 + CCNA_01889 0.87 +1.3 2,030,697 + CCNA_01889 0.87 +0.1 2,030,697 + CCNA_01889 0.87 -0.4 2,030,697 + CCNA_01889 0.87 +1.2 2,030,697 + CCNA_01889 0.87 +1.5 2,030,705 - CCNA_01889 0.87 +2.5 2,030,705 - CCNA_01889 0.87 +0.1 2,030,705 - CCNA_01889 0.87 -0.5 2,030,705 - CCNA_01889 0.87 +0.5 2,030,705 - CCNA_01889 0.87 -1.3 2,030,725 + CCNA_01889 0.89 +2.9 2,030,880 + -1.5 2,030,887 + -0.7 2,030,895 - -0.1 2,030,958 + -1.2 2,030,958 + -0.9 2,030,966 - -1.2 2,030,966 - -0.6 2,030,969 + -0.9 2,030,978 - +0.3 2,030,983 + +0.0 2,030,983 + -0.3 2,031,012 + -1.2 2,031,022 - -1.5 2,031,038 + -0.1 2,031,038 + +0.6 2,031,038 + -1.1 2,031,046 - -0.5 2,031,119 + -1.4 2,031,142 + -0.6 2,031,171 + +1.9 2,031,268 + -0.0 2,031,269 - +0.2 2,031,333 + CCNA_01890 0.12 +0.2 2,031,355 + +1.9 2,031,371 - CCNA_01890 0.14 -1.0 2,031,391 + CCNA_01890 0.16 -0.2 2,031,508 - CCNA_01890 0.23 -0.2 2,031,514 - CCNA_01890 0.24 -1.7 2,031,514 - CCNA_01890 0.24 +0.3 2,031,530 + CCNA_01890 0.25 -1.3 2,031,554 + CCNA_01890 0.26 -0.2 2,031,554 + CCNA_01890 0.26 -0.5 2,031,667 - CCNA_01890 0.34 +1.1 2,031,667 - CCNA_01890 0.34 -0.2 2,031,696 - CCNA_01890 0.36 +0.7 2,031,708 - CCNA_01890 0.37 -0.4 2,031,787 + CCNA_01890 0.42 -0.9 2,031,900 + CCNA_01890 0.49 -1.7 2,031,903 - CCNA_01890 0.50 -0.4 2,031,946 - CCNA_01890 0.53 -0.1 2,031,946 - CCNA_01890 0.53 -0.1 2,031,965 + CCNA_01890 0.54 +1.5 2,031,971 + CCNA_01890 0.54 -1.3 2,031,971 + CCNA_01890 0.54 -0.2 2,031,971 + CCNA_01890 0.54 -0.8 2,031,971 + CCNA_01890 0.54 -1.7 2,031,976 + CCNA_01890 0.55 -0.4 2,031,978 + CCNA_01890 0.55 +0.9 2,031,978 - CCNA_01890 0.55 +0.8 2,031,979 - CCNA_01890 0.55 -0.5 2,031,979 - CCNA_01890 0.55 +0.3 2,031,979 - CCNA_01890 0.55 -1.4 2,031,979 - CCNA_01890 0.55 +0.2 2,031,979 - CCNA_01890 0.55 -1.8 2,031,979 - CCNA_01890 0.55 -1.2 2,031,979 - CCNA_01890 0.55 -1.8 2,031,979 - CCNA_01890 0.55 -0.1 2,031,979 - CCNA_01890 0.55 +0.7 2,032,001 + CCNA_01890 0.56 -0.0 2,032,001 + CCNA_01890 0.56 -2.0 2,032,001 + CCNA_01890 0.56 -1.3 2,032,001 + CCNA_01890 0.56 -1.0 2,032,001 + CCNA_01890 0.56 +0.1 2,032,009 - CCNA_01890 0.57 -0.2 2,032,128 - CCNA_01890 0.65 -0.1 2,032,207 - CCNA_01890 0.70 -1.2 2,032,212 - CCNA_01890 0.70 -0.6 2,032,227 + CCNA_01890 0.71 -1.6 2,032,247 - CCNA_01890 0.73 -3.0 2,032,297 - CCNA_01890 0.76 -1.5 2,032,306 - CCNA_01890 0.76 +0.5 2,032,362 - CCNA_01890 0.80 -0.0 2,032,362 - CCNA_01890 0.80 -1.1 2,032,365 + CCNA_01890 0.80 -1.8 2,032,417 + CCNA_01890 0.84 -0.8 2,032,452 + CCNA_01890 0.86 +0.8 2,032,482 + CCNA_01890 0.88 -1.4 2,032,516 - -1.6 2,032,516 - -0.4 2,032,540 + +0.7 2,032,554 + -0.7 2,032,554 + -0.0 2,032,593 + +0.6 2,032,593 + -0.9 2,032,601 - -0.0 2,032,601 - -0.3 2,032,813 + +0.9 2,032,841 + +0.1 2,032,851 + -1.5 2,032,851 + +0.1 2,032,859 + CCNA_01891 0.10 +0.1 2,032,859 + CCNA_01891 0.10 -0.3 2,032,859 - CCNA_01891 0.10 -0.6 2,032,859 - CCNA_01891 0.10 +0.2 2,032,864 + CCNA_01891 0.11 +0.2 2,032,867 - CCNA_01891 0.11 -0.9 2,032,872 - CCNA_01891 0.12 -0.5 2,032,872 - CCNA_01891 0.12 -1.2 2,032,877 - CCNA_01891 0.12 +2.5 2,032,877 - CCNA_01891 0.12 +0.7 2,032,877 - CCNA_01891 0.12 -1.4 2,032,901 - CCNA_01891 0.15 -1.2 2,032,911 + CCNA_01891 0.17 -0.3 2,032,929 - CCNA_01891 0.19 -0.6 2,032,929 - CCNA_01891 0.19 +0.5 2,033,073 - CCNA_01891 0.36 +1.9 2,033,081 - CCNA_01891 0.37 +0.9 2,033,187 + +3.5 2,033,195 - CCNA_01891 0.51 -1.1 2,033,214 - CCNA_01891 0.53 +0.5 2,033,214 - CCNA_01891 0.53 -0.2 2,033,214 - CCNA_01891 0.53 +0.5 2,033,231 - CCNA_01891 0.55 -0.2 2,033,327 - CCNA_01891 0.67 -0.6 2,033,355 - CCNA_01891 0.70 +0.3 2,033,380 - CCNA_01891 0.73 +0.3 2,033,380 - CCNA_01891 0.73 -1.1 2,033,384 + CCNA_01891 0.74 +1.1 2,033,389 + CCNA_01891 0.74 -0.0 2,033,392 - CCNA_01891 0.75 -1.6 2,033,397 - CCNA_01891 0.75 -1.8 2,033,402 - CCNA_01891 0.76 -0.8 2,033,453 - CCNA_01891 0.82 -2.0 2,033,567 - +0.0 2,033,586 - +0.3 2,033,586 - -1.1 2,033,616 + -0.5 2,033,618 - +0.3 2,033,644 - -0.1
Or see this region's nucleotide sequence