Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01890

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01889 and CCNA_01890 are separated by 242 nucleotidesCCNA_01890 and CCNA_01891 are separated by 113 nucleotides CCNA_01889: CCNA_01889 - long-chain-fatty-acid--CoA ligase, at 2,029,278 to 2,030,912 _01889 CCNA_01890: CCNA_01890 - enoyl-CoA hydratase/isomerase family protein, at 2,031,155 to 2,032,660 _01890 CCNA_01891: CCNA_01891 - enoyl-CoA hydratase/carnithine racemase, at 2,032,774 to 2,033,601 _01891 Position (kb) 2031 2032 2033Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2030.168 kb on + strand, within CCNA_01889at 2030.168 kb on + strand, within CCNA_01889at 2030.176 kb on - strand, within CCNA_01889at 2030.176 kb on - strand, within CCNA_01889at 2030.204 kb on - strand, within CCNA_01889at 2030.234 kb on - strand, within CCNA_01889at 2030.234 kb on - strand, within CCNA_01889at 2030.322 kb on + strand, within CCNA_01889at 2030.335 kb on + strand, within CCNA_01889at 2030.363 kb on - strand, within CCNA_01889at 2030.401 kb on + strand, within CCNA_01889at 2030.433 kb on - strand, within CCNA_01889at 2030.443 kb on - strand, within CCNA_01889at 2030.446 kb on - strand, within CCNA_01889at 2030.453 kb on + strand, within CCNA_01889at 2030.538 kb on + strand, within CCNA_01889at 2030.556 kb on - strand, within CCNA_01889at 2030.638 kb on + strand, within CCNA_01889at 2030.678 kb on - strand, within CCNA_01889at 2030.697 kb on + strand, within CCNA_01889at 2030.697 kb on + strand, within CCNA_01889at 2030.697 kb on + strand, within CCNA_01889at 2030.697 kb on + strand, within CCNA_01889at 2030.697 kb on + strand, within CCNA_01889at 2030.697 kb on + strand, within CCNA_01889at 2030.697 kb on + strand, within CCNA_01889at 2030.697 kb on + strand, within CCNA_01889at 2030.705 kb on - strand, within CCNA_01889at 2030.705 kb on - strand, within CCNA_01889at 2030.705 kb on - strand, within CCNA_01889at 2030.705 kb on - strand, within CCNA_01889at 2030.705 kb on - strand, within CCNA_01889at 2030.725 kb on + strand, within CCNA_01889at 2030.880 kb on + strandat 2030.887 kb on + strandat 2030.895 kb on - strandat 2030.958 kb on + strandat 2030.958 kb on + strandat 2030.966 kb on - strandat 2030.966 kb on - strandat 2030.969 kb on + strandat 2030.978 kb on - strandat 2030.983 kb on + strandat 2030.983 kb on + strandat 2031.012 kb on + strandat 2031.022 kb on - strandat 2031.038 kb on + strandat 2031.038 kb on + strandat 2031.038 kb on + strandat 2031.046 kb on - strandat 2031.119 kb on + strandat 2031.142 kb on + strandat 2031.171 kb on + strandat 2031.268 kb on + strandat 2031.269 kb on - strandat 2031.333 kb on + strand, within CCNA_01890at 2031.355 kb on + strandat 2031.371 kb on - strand, within CCNA_01890at 2031.391 kb on + strand, within CCNA_01890at 2031.508 kb on - strand, within CCNA_01890at 2031.514 kb on - strand, within CCNA_01890at 2031.514 kb on - strand, within CCNA_01890at 2031.530 kb on + strand, within CCNA_01890at 2031.554 kb on + strand, within CCNA_01890at 2031.554 kb on + strand, within CCNA_01890at 2031.667 kb on - strand, within CCNA_01890at 2031.667 kb on - strand, within CCNA_01890at 2031.696 kb on - strand, within CCNA_01890at 2031.708 kb on - strand, within CCNA_01890at 2031.787 kb on + strand, within CCNA_01890at 2031.900 kb on + strand, within CCNA_01890at 2031.903 kb on - strand, within CCNA_01890at 2031.946 kb on - strand, within CCNA_01890at 2031.946 kb on - strand, within CCNA_01890at 2031.965 kb on + strand, within CCNA_01890at 2031.971 kb on + strand, within CCNA_01890at 2031.971 kb on + strand, within CCNA_01890at 2031.971 kb on + strand, within CCNA_01890at 2031.971 kb on + strand, within CCNA_01890at 2031.976 kb on + strand, within CCNA_01890at 2031.978 kb on + strand, within CCNA_01890at 2031.978 kb on - strand, within CCNA_01890at 2031.979 kb on - strand, within CCNA_01890at 2031.979 kb on - strand, within CCNA_01890at 2031.979 kb on - strand, within CCNA_01890at 2031.979 kb on - strand, within CCNA_01890at 2031.979 kb on - strand, within CCNA_01890at 2031.979 kb on - strand, within CCNA_01890at 2031.979 kb on - strand, within CCNA_01890at 2031.979 kb on - strand, within CCNA_01890at 2031.979 kb on - strand, within CCNA_01890at 2032.001 kb on + strand, within CCNA_01890at 2032.001 kb on + strand, within CCNA_01890at 2032.001 kb on + strand, within CCNA_01890at 2032.001 kb on + strand, within CCNA_01890at 2032.001 kb on + strand, within CCNA_01890at 2032.009 kb on - strand, within CCNA_01890at 2032.128 kb on - strand, within CCNA_01890at 2032.207 kb on - strand, within CCNA_01890at 2032.212 kb on - strand, within CCNA_01890at 2032.227 kb on + strand, within CCNA_01890at 2032.247 kb on - strand, within CCNA_01890at 2032.297 kb on - strand, within CCNA_01890at 2032.306 kb on - strand, within CCNA_01890at 2032.362 kb on - strand, within CCNA_01890at 2032.362 kb on - strand, within CCNA_01890at 2032.365 kb on + strand, within CCNA_01890at 2032.417 kb on + strand, within CCNA_01890at 2032.452 kb on + strand, within CCNA_01890at 2032.482 kb on + strand, within CCNA_01890at 2032.516 kb on - strandat 2032.516 kb on - strandat 2032.540 kb on + strandat 2032.554 kb on + strandat 2032.554 kb on + strandat 2032.593 kb on + strandat 2032.593 kb on + strandat 2032.601 kb on - strandat 2032.601 kb on - strandat 2032.813 kb on + strandat 2032.841 kb on + strandat 2032.851 kb on + strandat 2032.851 kb on + strandat 2032.859 kb on + strand, within CCNA_01891at 2032.859 kb on + strand, within CCNA_01891at 2032.859 kb on - strand, within CCNA_01891at 2032.859 kb on - strand, within CCNA_01891at 2032.864 kb on + strand, within CCNA_01891at 2032.867 kb on - strand, within CCNA_01891at 2032.872 kb on - strand, within CCNA_01891at 2032.872 kb on - strand, within CCNA_01891at 2032.877 kb on - strand, within CCNA_01891at 2032.877 kb on - strand, within CCNA_01891at 2032.877 kb on - strand, within CCNA_01891at 2032.901 kb on - strand, within CCNA_01891at 2032.911 kb on + strand, within CCNA_01891at 2032.929 kb on - strand, within CCNA_01891at 2032.929 kb on - strand, within CCNA_01891at 2033.073 kb on - strand, within CCNA_01891at 2033.081 kb on - strand, within CCNA_01891at 2033.187 kb on + strandat 2033.195 kb on - strand, within CCNA_01891at 2033.214 kb on - strand, within CCNA_01891at 2033.214 kb on - strand, within CCNA_01891at 2033.214 kb on - strand, within CCNA_01891at 2033.231 kb on - strand, within CCNA_01891at 2033.327 kb on - strand, within CCNA_01891at 2033.355 kb on - strand, within CCNA_01891at 2033.380 kb on - strand, within CCNA_01891at 2033.380 kb on - strand, within CCNA_01891at 2033.384 kb on + strand, within CCNA_01891at 2033.389 kb on + strand, within CCNA_01891at 2033.392 kb on - strand, within CCNA_01891at 2033.397 kb on - strand, within CCNA_01891at 2033.402 kb on - strand, within CCNA_01891at 2033.453 kb on - strand, within CCNA_01891at 2033.567 kb on - strandat 2033.586 kb on - strandat 2033.586 kb on - strandat 2033.616 kb on + strandat 2033.618 kb on - strandat 2033.644 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,030,168 + CCNA_01889 0.54 +0.5
2,030,168 + CCNA_01889 0.54 -2.3
2,030,176 - CCNA_01889 0.55 +1.5
2,030,176 - CCNA_01889 0.55 -1.4
2,030,204 - CCNA_01889 0.57 +0.9
2,030,234 - CCNA_01889 0.58 -1.3
2,030,234 - CCNA_01889 0.58 +1.1
2,030,322 + CCNA_01889 0.64 +0.9
2,030,335 + CCNA_01889 0.65 +0.0
2,030,363 - CCNA_01889 0.66 +0.0
2,030,401 + CCNA_01889 0.69 +0.5
2,030,433 - CCNA_01889 0.71 -0.7
2,030,443 - CCNA_01889 0.71 +0.3
2,030,446 - CCNA_01889 0.71 +0.9
2,030,453 + CCNA_01889 0.72 +0.5
2,030,538 + CCNA_01889 0.77 +1.0
2,030,556 - CCNA_01889 0.78 -0.7
2,030,638 + CCNA_01889 0.83 +1.0
2,030,678 - CCNA_01889 0.86 -0.2
2,030,697 + CCNA_01889 0.87 +1.5
2,030,697 + CCNA_01889 0.87 +0.2
2,030,697 + CCNA_01889 0.87 -1.6
2,030,697 + CCNA_01889 0.87 +1.3
2,030,697 + CCNA_01889 0.87 +0.1
2,030,697 + CCNA_01889 0.87 -0.4
2,030,697 + CCNA_01889 0.87 +1.2
2,030,697 + CCNA_01889 0.87 +1.5
2,030,705 - CCNA_01889 0.87 +2.5
2,030,705 - CCNA_01889 0.87 +0.1
2,030,705 - CCNA_01889 0.87 -0.5
2,030,705 - CCNA_01889 0.87 +0.5
2,030,705 - CCNA_01889 0.87 -1.3
2,030,725 + CCNA_01889 0.89 +2.9
2,030,880 + -1.5
2,030,887 + -0.7
2,030,895 - -0.1
2,030,958 + -1.2
2,030,958 + -0.9
2,030,966 - -1.2
2,030,966 - -0.6
2,030,969 + -0.9
2,030,978 - +0.3
2,030,983 + +0.0
2,030,983 + -0.3
2,031,012 + -1.2
2,031,022 - -1.5
2,031,038 + -0.1
2,031,038 + +0.6
2,031,038 + -1.1
2,031,046 - -0.5
2,031,119 + -1.4
2,031,142 + -0.6
2,031,171 + +1.9
2,031,268 + -0.0
2,031,269 - +0.2
2,031,333 + CCNA_01890 0.12 +0.2
2,031,355 + +1.9
2,031,371 - CCNA_01890 0.14 -1.0
2,031,391 + CCNA_01890 0.16 -0.2
2,031,508 - CCNA_01890 0.23 -0.2
2,031,514 - CCNA_01890 0.24 -1.7
2,031,514 - CCNA_01890 0.24 +0.3
2,031,530 + CCNA_01890 0.25 -1.3
2,031,554 + CCNA_01890 0.26 -0.2
2,031,554 + CCNA_01890 0.26 -0.5
2,031,667 - CCNA_01890 0.34 +1.1
2,031,667 - CCNA_01890 0.34 -0.2
2,031,696 - CCNA_01890 0.36 +0.7
2,031,708 - CCNA_01890 0.37 -0.4
2,031,787 + CCNA_01890 0.42 -0.9
2,031,900 + CCNA_01890 0.49 -1.7
2,031,903 - CCNA_01890 0.50 -0.4
2,031,946 - CCNA_01890 0.53 -0.1
2,031,946 - CCNA_01890 0.53 -0.1
2,031,965 + CCNA_01890 0.54 +1.5
2,031,971 + CCNA_01890 0.54 -1.3
2,031,971 + CCNA_01890 0.54 -0.2
2,031,971 + CCNA_01890 0.54 -0.8
2,031,971 + CCNA_01890 0.54 -1.7
2,031,976 + CCNA_01890 0.55 -0.4
2,031,978 + CCNA_01890 0.55 +0.9
2,031,978 - CCNA_01890 0.55 +0.8
2,031,979 - CCNA_01890 0.55 -0.5
2,031,979 - CCNA_01890 0.55 +0.3
2,031,979 - CCNA_01890 0.55 -1.4
2,031,979 - CCNA_01890 0.55 +0.2
2,031,979 - CCNA_01890 0.55 -1.8
2,031,979 - CCNA_01890 0.55 -1.2
2,031,979 - CCNA_01890 0.55 -1.8
2,031,979 - CCNA_01890 0.55 -0.1
2,031,979 - CCNA_01890 0.55 +0.7
2,032,001 + CCNA_01890 0.56 -0.0
2,032,001 + CCNA_01890 0.56 -2.0
2,032,001 + CCNA_01890 0.56 -1.3
2,032,001 + CCNA_01890 0.56 -1.0
2,032,001 + CCNA_01890 0.56 +0.1
2,032,009 - CCNA_01890 0.57 -0.2
2,032,128 - CCNA_01890 0.65 -0.1
2,032,207 - CCNA_01890 0.70 -1.2
2,032,212 - CCNA_01890 0.70 -0.6
2,032,227 + CCNA_01890 0.71 -1.6
2,032,247 - CCNA_01890 0.73 -3.0
2,032,297 - CCNA_01890 0.76 -1.5
2,032,306 - CCNA_01890 0.76 +0.5
2,032,362 - CCNA_01890 0.80 -0.0
2,032,362 - CCNA_01890 0.80 -1.1
2,032,365 + CCNA_01890 0.80 -1.8
2,032,417 + CCNA_01890 0.84 -0.8
2,032,452 + CCNA_01890 0.86 +0.8
2,032,482 + CCNA_01890 0.88 -1.4
2,032,516 - -1.6
2,032,516 - -0.4
2,032,540 + +0.7
2,032,554 + -0.7
2,032,554 + -0.0
2,032,593 + +0.6
2,032,593 + -0.9
2,032,601 - -0.0
2,032,601 - -0.3
2,032,813 + +0.9
2,032,841 + +0.1
2,032,851 + -1.5
2,032,851 + +0.1
2,032,859 + CCNA_01891 0.10 +0.1
2,032,859 + CCNA_01891 0.10 -0.3
2,032,859 - CCNA_01891 0.10 -0.6
2,032,859 - CCNA_01891 0.10 +0.2
2,032,864 + CCNA_01891 0.11 +0.2
2,032,867 - CCNA_01891 0.11 -0.9
2,032,872 - CCNA_01891 0.12 -0.5
2,032,872 - CCNA_01891 0.12 -1.2
2,032,877 - CCNA_01891 0.12 +2.5
2,032,877 - CCNA_01891 0.12 +0.7
2,032,877 - CCNA_01891 0.12 -1.4
2,032,901 - CCNA_01891 0.15 -1.2
2,032,911 + CCNA_01891 0.17 -0.3
2,032,929 - CCNA_01891 0.19 -0.6
2,032,929 - CCNA_01891 0.19 +0.5
2,033,073 - CCNA_01891 0.36 +1.9
2,033,081 - CCNA_01891 0.37 +0.9
2,033,187 + +3.5
2,033,195 - CCNA_01891 0.51 -1.1
2,033,214 - CCNA_01891 0.53 +0.5
2,033,214 - CCNA_01891 0.53 -0.2
2,033,214 - CCNA_01891 0.53 +0.5
2,033,231 - CCNA_01891 0.55 -0.2
2,033,327 - CCNA_01891 0.67 -0.6
2,033,355 - CCNA_01891 0.70 +0.3
2,033,380 - CCNA_01891 0.73 +0.3
2,033,380 - CCNA_01891 0.73 -1.1
2,033,384 + CCNA_01891 0.74 +1.1
2,033,389 + CCNA_01891 0.74 -0.0
2,033,392 - CCNA_01891 0.75 -1.6
2,033,397 - CCNA_01891 0.75 -1.8
2,033,402 - CCNA_01891 0.76 -0.8
2,033,453 - CCNA_01891 0.82 -2.0
2,033,567 - +0.0
2,033,586 - +0.3
2,033,586 - -1.1
2,033,616 + -0.5
2,033,618 - +0.3
2,033,644 - -0.1

Or see this region's nucleotide sequence