Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4388

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4387 and Ac3H11_4388 are separated by 67 nucleotidesAc3H11_4388 and Ac3H11_4389 are separated by 230 nucleotidesAc3H11_4389 and Ac3H11_4390 overlap by 4 nucleotides Ac3H11_4387 - Excinuclease ABC subunit A, at 180,768 to 183,857 _4387 Ac3H11_4388 - Esterase/lipase-like, at 183,925 to 184,914 _4388 Ac3H11_4389 - Two-component system response regulator OmpR, at 185,145 to 185,888 _4389 Ac3H11_4390 - integral membrane sensor signal transduction histidine kinase, at 185,885 to 187,267 _4390 Position (kb) 183 184 185Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 182.974 kb on - strand, within Ac3H11_4387at 183.048 kb on + strand, within Ac3H11_4387at 183.049 kb on - strand, within Ac3H11_4387at 183.049 kb on - strand, within Ac3H11_4387at 183.070 kb on + strand, within Ac3H11_4387at 183.070 kb on + strand, within Ac3H11_4387at 183.071 kb on - strand, within Ac3H11_4387at 183.071 kb on - strand, within Ac3H11_4387at 183.071 kb on - strand, within Ac3H11_4387at 183.071 kb on - strand, within Ac3H11_4387at 183.117 kb on + strand, within Ac3H11_4387at 183.117 kb on + strand, within Ac3H11_4387at 183.117 kb on + strand, within Ac3H11_4387at 183.118 kb on - strand, within Ac3H11_4387at 183.297 kb on + strand, within Ac3H11_4387at 183.297 kb on + strand, within Ac3H11_4387at 183.297 kb on + strand, within Ac3H11_4387at 183.297 kb on + strand, within Ac3H11_4387at 183.297 kb on + strand, within Ac3H11_4387at 183.298 kb on - strand, within Ac3H11_4387at 183.298 kb on - strand, within Ac3H11_4387at 183.298 kb on - strand, within Ac3H11_4387at 183.298 kb on - strand, within Ac3H11_4387at 183.330 kb on + strand, within Ac3H11_4387at 183.331 kb on - strand, within Ac3H11_4387at 183.331 kb on - strand, within Ac3H11_4387at 183.414 kb on + strand, within Ac3H11_4387at 183.414 kb on + strand, within Ac3H11_4387at 183.415 kb on - strand, within Ac3H11_4387at 183.477 kb on + strand, within Ac3H11_4387at 183.477 kb on + strand, within Ac3H11_4387at 183.477 kb on + strand, within Ac3H11_4387at 183.477 kb on + strand, within Ac3H11_4387at 183.477 kb on + strand, within Ac3H11_4387at 183.477 kb on + strand, within Ac3H11_4387at 183.477 kb on + strand, within Ac3H11_4387at 183.477 kb on + strand, within Ac3H11_4387at 183.477 kb on + strand, within Ac3H11_4387at 183.478 kb on - strand, within Ac3H11_4387at 183.478 kb on - strand, within Ac3H11_4387at 183.478 kb on - strand, within Ac3H11_4387at 183.478 kb on - strand, within Ac3H11_4387at 183.478 kb on - strand, within Ac3H11_4387at 183.579 kb on + strandat 183.579 kb on + strandat 183.579 kb on + strandat 183.579 kb on + strandat 183.579 kb on + strandat 183.579 kb on + strandat 183.580 kb on - strandat 183.580 kb on - strandat 183.580 kb on - strandat 183.580 kb on - strandat 183.580 kb on - strandat 183.580 kb on - strandat 183.580 kb on - strandat 183.580 kb on - strandat 183.580 kb on - strandat 183.580 kb on - strandat 183.822 kb on + strandat 183.823 kb on - strandat 183.892 kb on - strandat 183.926 kb on + strandat 184.227 kb on - strand, within Ac3H11_4388at 184.253 kb on + strand, within Ac3H11_4388at 184.254 kb on - strand, within Ac3H11_4388at 184.254 kb on - strand, within Ac3H11_4388at 184.254 kb on - strand, within Ac3H11_4388at 184.254 kb on - strand, within Ac3H11_4388at 184.500 kb on - strand, within Ac3H11_4388at 184.664 kb on + strand, within Ac3H11_4388at 184.664 kb on + strand, within Ac3H11_4388at 184.665 kb on - strand, within Ac3H11_4388at 184.665 kb on - strand, within Ac3H11_4388at 184.698 kb on - strand, within Ac3H11_4388at 184.871 kb on + strandat 184.872 kb on - strandat 185.095 kb on + strandat 185.095 kb on + strandat 185.095 kb on + strandat 185.095 kb on + strandat 185.095 kb on + strandat 185.095 kb on + strandat 185.095 kb on + strandat 185.096 kb on - strandat 185.096 kb on - strandat 185.099 kb on - strandat 185.214 kb on + strandat 185.215 kb on - strandat 185.232 kb on + strand, within Ac3H11_4389at 185.233 kb on - strand, within Ac3H11_4389at 185.233 kb on - strand, within Ac3H11_4389at 185.233 kb on - strand, within Ac3H11_4389at 185.451 kb on + strand, within Ac3H11_4389at 185.451 kb on + strand, within Ac3H11_4389at 185.451 kb on + strand, within Ac3H11_4389at 185.452 kb on - strand, within Ac3H11_4389at 185.452 kb on - strand, within Ac3H11_4389at 185.452 kb on - strand, within Ac3H11_4389at 185.452 kb on - strand, within Ac3H11_4389at 185.718 kb on + strand, within Ac3H11_4389at 185.719 kb on - strand, within Ac3H11_4389at 185.719 kb on - strand, within Ac3H11_4389at 185.838 kb on + strandat 185.838 kb on + strandat 185.838 kb on + strandat 185.838 kb on + strandat 185.839 kb on - strandat 185.839 kb on - strandat 185.839 kb on - strandat 185.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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182,974 - Ac3H11_4387 0.71 -2.8
183,048 + Ac3H11_4387 0.74 +0.1
183,049 - Ac3H11_4387 0.74 +0.3
183,049 - Ac3H11_4387 0.74 +0.4
183,070 + Ac3H11_4387 0.74 +0.2
183,070 + Ac3H11_4387 0.74 -0.2
183,071 - Ac3H11_4387 0.75 -0.6
183,071 - Ac3H11_4387 0.75 +0.6
183,071 - Ac3H11_4387 0.75 -0.3
183,071 - Ac3H11_4387 0.75 -0.5
183,117 + Ac3H11_4387 0.76 -0.2
183,117 + Ac3H11_4387 0.76 -1.6
183,117 + Ac3H11_4387 0.76 -0.0
183,118 - Ac3H11_4387 0.76 +0.1
183,297 + Ac3H11_4387 0.82 -0.1
183,297 + Ac3H11_4387 0.82 +0.1
183,297 + Ac3H11_4387 0.82 +0.1
183,297 + Ac3H11_4387 0.82 -1.7
183,297 + Ac3H11_4387 0.82 +0.6
183,298 - Ac3H11_4387 0.82 -0.5
183,298 - Ac3H11_4387 0.82 +2.1
183,298 - Ac3H11_4387 0.82 -0.2
183,298 - Ac3H11_4387 0.82 -1.7
183,330 + Ac3H11_4387 0.83 -3.3
183,331 - Ac3H11_4387 0.83 -0.3
183,331 - Ac3H11_4387 0.83 -0.5
183,414 + Ac3H11_4387 0.86 -0.0
183,414 + Ac3H11_4387 0.86 +0.2
183,415 - Ac3H11_4387 0.86 +0.4
183,477 + Ac3H11_4387 0.88 +0.9
183,477 + Ac3H11_4387 0.88 +0.9
183,477 + Ac3H11_4387 0.88 -0.9
183,477 + Ac3H11_4387 0.88 +0.5
183,477 + Ac3H11_4387 0.88 +0.0
183,477 + Ac3H11_4387 0.88 +1.1
183,477 + Ac3H11_4387 0.88 -0.1
183,477 + Ac3H11_4387 0.88 -1.0
183,477 + Ac3H11_4387 0.88 +0.1
183,478 - Ac3H11_4387 0.88 +0.3
183,478 - Ac3H11_4387 0.88 +1.0
183,478 - Ac3H11_4387 0.88 +0.2
183,478 - Ac3H11_4387 0.88 +0.8
183,478 - Ac3H11_4387 0.88 -0.1
183,579 + -0.1
183,579 + -0.5
183,579 + -1.1
183,579 + +0.7
183,579 + -0.3
183,579 + +0.1
183,580 - +0.4
183,580 - -1.2
183,580 - -0.5
183,580 - +0.3
183,580 - +0.7
183,580 - +0.1
183,580 - -0.6
183,580 - +0.8
183,580 - +0.7
183,580 - +1.2
183,822 + +1.1
183,823 - -0.8
183,892 - -0.5
183,926 + -0.0
184,227 - Ac3H11_4388 0.31 +1.4
184,253 + Ac3H11_4388 0.33 +1.6
184,254 - Ac3H11_4388 0.33 -0.8
184,254 - Ac3H11_4388 0.33 +0.3
184,254 - Ac3H11_4388 0.33 -0.1
184,254 - Ac3H11_4388 0.33 -0.2
184,500 - Ac3H11_4388 0.58 -0.1
184,664 + Ac3H11_4388 0.75 +0.3
184,664 + Ac3H11_4388 0.75 +0.1
184,665 - Ac3H11_4388 0.75 -0.8
184,665 - Ac3H11_4388 0.75 -0.2
184,698 - Ac3H11_4388 0.78 +0.5
184,871 + -0.4
184,872 - +0.3
185,095 + +0.1
185,095 + -0.2
185,095 + -0.3
185,095 + -0.0
185,095 + -2.0
185,095 + +0.4
185,095 + +1.3
185,096 - +1.0
185,096 - -0.6
185,099 - -0.7
185,214 + -0.2
185,215 - +0.5
185,232 + Ac3H11_4389 0.12 +0.3
185,233 - Ac3H11_4389 0.12 -0.6
185,233 - Ac3H11_4389 0.12 +0.5
185,233 - Ac3H11_4389 0.12 +0.5
185,451 + Ac3H11_4389 0.41 +0.8
185,451 + Ac3H11_4389 0.41 -1.9
185,451 + Ac3H11_4389 0.41 -1.4
185,452 - Ac3H11_4389 0.41 +1.3
185,452 - Ac3H11_4389 0.41 -0.2
185,452 - Ac3H11_4389 0.41 +0.6
185,452 - Ac3H11_4389 0.41 -0.6
185,718 + Ac3H11_4389 0.77 -0.1
185,719 - Ac3H11_4389 0.77 -1.7
185,719 - Ac3H11_4389 0.77 +0.0
185,838 + +0.3
185,838 + +0.0
185,838 + -0.2
185,838 + +1.1
185,839 - +0.3
185,839 - +0.3
185,839 - +0.2
185,839 - -0.3

Or see this region's nucleotide sequence