Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2108

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2107 and Ac3H11_2108 are separated by 253 nucleotidesAc3H11_2108 and Ac3H11_2109 overlap by 8 nucleotidesAc3H11_2109 and Ac3H11_2110 are separated by 5 nucleotides Ac3H11_2107 - T1SS secreted agglutinin RTX, at 334,939 to 344,733 _2107 Ac3H11_2108 - FIG094192: hypothetical protein, at 344,987 to 345,220 _2108 Ac3H11_2109 - Nitrate/nitrite response regulator protein, at 345,213 to 345,857 _2109 Ac3H11_2110 - Type I secretion system, membrane fusion protein LapC, at 345,863 to 347,278 _2110 Position (kb) 344 345 346Strain fitness (log2 ratio) -2 -1 0 1 2 3at 344.073 kb on - strandat 344.073 kb on - strandat 344.078 kb on + strandat 344.078 kb on + strandat 344.078 kb on + strandat 344.079 kb on - strandat 344.079 kb on - strandat 344.079 kb on - strandat 344.414 kb on + strandat 344.415 kb on - strandat 344.415 kb on - strandat 344.415 kb on - strandat 344.415 kb on - strandat 344.415 kb on - strandat 344.415 kb on - strandat 344.415 kb on - strandat 344.420 kb on + strandat 344.421 kb on - strandat 344.421 kb on - strandat 344.631 kb on + strandat 344.632 kb on - strandat 344.906 kb on + strandat 344.906 kb on + strandat 344.906 kb on + strandat 344.906 kb on + strandat 344.951 kb on + strandat 344.951 kb on + strandat 344.951 kb on + strandat 344.951 kb on + strandat 344.951 kb on + strandat 344.951 kb on + strandat 344.951 kb on + strandat 344.951 kb on + strandat 344.952 kb on - strandat 344.952 kb on - strandat 344.952 kb on - strandat 344.952 kb on - strandat 344.952 kb on - strandat 344.952 kb on - strandat 345.020 kb on + strand, within Ac3H11_2108at 345.020 kb on + strand, within Ac3H11_2108at 345.032 kb on - strand, within Ac3H11_2108at 345.032 kb on - strand, within Ac3H11_2108at 345.032 kb on - strand, within Ac3H11_2108at 345.032 kb on - strand, within Ac3H11_2108at 345.101 kb on - strand, within Ac3H11_2108at 345.571 kb on + strand, within Ac3H11_2109at 345.572 kb on - strand, within Ac3H11_2109at 345.572 kb on - strand, within Ac3H11_2109at 345.697 kb on + strand, within Ac3H11_2109at 345.697 kb on + strand, within Ac3H11_2109at 345.697 kb on + strand, within Ac3H11_2109at 345.698 kb on - strand, within Ac3H11_2109at 345.698 kb on - strand, within Ac3H11_2109at 345.698 kb on - strand, within Ac3H11_2109at 345.753 kb on + strand, within Ac3H11_2109at 345.753 kb on + strand, within Ac3H11_2109at 345.753 kb on + strand, within Ac3H11_2109at 345.754 kb on - strand, within Ac3H11_2109at 345.754 kb on - strand, within Ac3H11_2109at 345.754 kb on - strand, within Ac3H11_2109at 345.754 kb on - strand, within Ac3H11_2109at 345.754 kb on - strand, within Ac3H11_2109at 345.915 kb on + strandat 345.915 kb on + strandat 345.916 kb on - strandat 346.026 kb on + strand, within Ac3H11_2110at 346.026 kb on + strand, within Ac3H11_2110at 346.027 kb on - strand, within Ac3H11_2110at 346.027 kb on - strand, within Ac3H11_2110at 346.027 kb on - strand, within Ac3H11_2110at 346.027 kb on - strand, within Ac3H11_2110at 346.098 kb on + strand, within Ac3H11_2110at 346.098 kb on + strand, within Ac3H11_2110at 346.098 kb on + strand, within Ac3H11_2110at 346.098 kb on + strand, within Ac3H11_2110at 346.098 kb on + strand, within Ac3H11_2110at 346.099 kb on - strand, within Ac3H11_2110at 346.114 kb on - strand, within Ac3H11_2110

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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344,073 - -0.0
344,073 - +0.1
344,078 + +0.8
344,078 + +0.4
344,078 + -0.2
344,079 - -0.6
344,079 - +0.7
344,079 - +0.9
344,414 + +0.1
344,415 - -0.6
344,415 - -0.2
344,415 - -1.7
344,415 - -0.1
344,415 - +0.1
344,415 - +0.3
344,415 - +0.7
344,420 + -1.1
344,421 - +0.2
344,421 - -1.0
344,631 + -0.4
344,632 - -0.8
344,906 + -2.6
344,906 + -0.3
344,906 + -0.5
344,906 + -2.6
344,951 + -0.1
344,951 + -1.1
344,951 + -0.4
344,951 + -0.7
344,951 + -0.0
344,951 + +0.3
344,951 + -0.8
344,951 + -0.4
344,952 - +2.9
344,952 - +0.7
344,952 - -0.9
344,952 - +0.7
344,952 - +0.4
344,952 - +0.1
345,020 + Ac3H11_2108 0.14 +0.3
345,020 + Ac3H11_2108 0.14 -0.5
345,032 - Ac3H11_2108 0.19 -0.5
345,032 - Ac3H11_2108 0.19 -2.7
345,032 - Ac3H11_2108 0.19 -0.0
345,032 - Ac3H11_2108 0.19 -1.1
345,101 - Ac3H11_2108 0.49 +0.4
345,571 + Ac3H11_2109 0.56 -0.1
345,572 - Ac3H11_2109 0.56 -2.4
345,572 - Ac3H11_2109 0.56 -1.8
345,697 + Ac3H11_2109 0.75 -1.4
345,697 + Ac3H11_2109 0.75 -0.2
345,697 + Ac3H11_2109 0.75 -0.0
345,698 - Ac3H11_2109 0.75 +0.3
345,698 - Ac3H11_2109 0.75 +1.6
345,698 - Ac3H11_2109 0.75 -0.4
345,753 + Ac3H11_2109 0.84 -0.7
345,753 + Ac3H11_2109 0.84 -0.7
345,753 + Ac3H11_2109 0.84 -0.4
345,754 - Ac3H11_2109 0.84 -0.0
345,754 - Ac3H11_2109 0.84 +0.1
345,754 - Ac3H11_2109 0.84 -0.6
345,754 - Ac3H11_2109 0.84 -0.5
345,754 - Ac3H11_2109 0.84 -0.4
345,915 + -0.0
345,915 + +0.6
345,916 - +0.3
346,026 + Ac3H11_2110 0.12 -0.3
346,026 + Ac3H11_2110 0.12 -0.0
346,027 - Ac3H11_2110 0.12 +1.1
346,027 - Ac3H11_2110 0.12 -0.8
346,027 - Ac3H11_2110 0.12 -1.6
346,027 - Ac3H11_2110 0.12 +0.4
346,098 + Ac3H11_2110 0.17 +0.3
346,098 + Ac3H11_2110 0.17 +0.0
346,098 + Ac3H11_2110 0.17 -1.1
346,098 + Ac3H11_2110 0.17 +0.2
346,098 + Ac3H11_2110 0.17 +0.2
346,099 - Ac3H11_2110 0.17 -0.5
346,114 - Ac3H11_2110 0.18 -0.4

Or see this region's nucleotide sequence