Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1771

Experiment: L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1770 and Ac3H11_1771 are separated by 166 nucleotidesAc3H11_1771 and Ac3H11_1772 are separated by 131 nucleotides Ac3H11_1770 - Threonine dehydratase (EC 4.3.1.19), at 385,256 to 386,197 _1770 Ac3H11_1771 - tRNA nucleotidyltransferase, A-adding (EC 2.7.7.25), at 386,364 to 387,077 _1771 Ac3H11_1772 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2), at 387,209 to 388,204 _1772 Position (kb) 386 387 388Strain fitness (log2 ratio) -1 0 1 2at 385.756 kb on - strand, within Ac3H11_1770at 385.821 kb on + strand, within Ac3H11_1770at 385.821 kb on + strand, within Ac3H11_1770at 385.822 kb on - strand, within Ac3H11_1770at 386.016 kb on + strand, within Ac3H11_1770at 386.243 kb on - strandat 386.243 kb on - strandat 386.243 kb on - strandat 386.243 kb on - strandat 386.243 kb on - strandat 386.996 kb on + strand, within Ac3H11_1771at 387.128 kb on + strandat 387.129 kb on - strandat 387.165 kb on + strandat 387.165 kb on + strandat 387.166 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
remove
385,756 - Ac3H11_1770 0.53 -1.5
385,821 + Ac3H11_1770 0.60 -0.7
385,821 + Ac3H11_1770 0.60 -0.8
385,822 - Ac3H11_1770 0.60 +0.1
386,016 + Ac3H11_1770 0.81 -0.9
386,243 - -0.7
386,243 - -0.1
386,243 - +0.6
386,243 - +0.1
386,243 - -0.6
386,996 + Ac3H11_1771 0.89 +0.2
387,128 + +2.2
387,129 - -0.0
387,165 + +0.5
387,165 + -0.4
387,166 - -0.1

Or see this region's nucleotide sequence