Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1769

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1768 and Ac3H11_1769 are separated by 310 nucleotidesAc3H11_1769 and Ac3H11_1770 are separated by 32 nucleotides Ac3H11_1768 - LysR family transcriptional regulator y2377 (Yersinia pestis KIM), at 382,652 to 383,551 _1768 Ac3H11_1769 - Seryl-tRNA synthetase (EC 6.1.1.11), at 383,862 to 385,223 _1769 Ac3H11_1770 - Threonine dehydratase (EC 4.3.1.19), at 385,256 to 386,197 _1770 Position (kb) 383 384 385 386Strain fitness (log2 ratio) -2 -1 0 1at 383.053 kb on - strand, within Ac3H11_1768at 383.137 kb on - strand, within Ac3H11_1768at 383.444 kb on + strand, within Ac3H11_1768at 383.444 kb on + strand, within Ac3H11_1768at 383.444 kb on + strand, within Ac3H11_1768at 383.450 kb on + strand, within Ac3H11_1768at 383.450 kb on + strand, within Ac3H11_1768at 383.451 kb on - strand, within Ac3H11_1768at 383.451 kb on - strand, within Ac3H11_1768at 383.596 kb on + strandat 383.597 kb on - strandat 383.656 kb on + strandat 383.656 kb on + strandat 383.657 kb on - strandat 383.657 kb on - strandat 383.744 kb on + strandat 383.744 kb on + strandat 383.745 kb on - strandat 383.792 kb on + strandat 383.792 kb on + strandat 383.792 kb on + strandat 383.792 kb on + strandat 383.793 kb on - strandat 383.793 kb on - strandat 383.793 kb on - strandat 383.793 kb on - strandat 383.798 kb on + strandat 383.798 kb on + strandat 383.799 kb on - strandat 383.799 kb on - strandat 385.235 kb on - strandat 385.329 kb on + strandat 385.329 kb on + strandat 385.329 kb on + strandat 385.330 kb on - strandat 385.756 kb on - strand, within Ac3H11_1770at 385.821 kb on + strand, within Ac3H11_1770at 385.821 kb on + strand, within Ac3H11_1770at 385.822 kb on - strand, within Ac3H11_1770at 386.016 kb on + strand, within Ac3H11_1770

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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383,053 - Ac3H11_1768 0.45 -1.8
383,137 - Ac3H11_1768 0.54 -1.3
383,444 + Ac3H11_1768 0.88 -0.0
383,444 + Ac3H11_1768 0.88 +0.6
383,444 + Ac3H11_1768 0.88 +0.0
383,450 + Ac3H11_1768 0.89 -0.2
383,450 + Ac3H11_1768 0.89 -1.5
383,451 - Ac3H11_1768 0.89 -0.6
383,451 - Ac3H11_1768 0.89 -0.4
383,596 + -0.1
383,597 - -0.5
383,656 + +0.1
383,656 + +0.2
383,657 - +0.1
383,657 - -0.4
383,744 + +0.2
383,744 + +0.1
383,745 - -0.4
383,792 + -1.1
383,792 + +1.0
383,792 + -0.4
383,792 + +1.2
383,793 - +0.1
383,793 - -0.7
383,793 - -0.2
383,793 - -1.2
383,798 + -0.1
383,798 + +0.4
383,799 - +0.0
383,799 - -1.0
385,235 - +0.0
385,329 + -0.4
385,329 + +0.0
385,329 + +1.1
385,330 - +0.9
385,756 - Ac3H11_1770 0.53 -1.5
385,821 + Ac3H11_1770 0.60 -0.7
385,821 + Ac3H11_1770 0.60 -0.8
385,822 - Ac3H11_1770 0.60 +0.1
386,016 + Ac3H11_1770 0.81 -0.9

Or see this region's nucleotide sequence