Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1159

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1157 and Ac3H11_1158 are separated by 88 nucleotidesAc3H11_1158 and Ac3H11_1159 are separated by 133 nucleotidesAc3H11_1159 and Ac3H11_1160 overlap by 4 nucleotidesAc3H11_1160 and Ac3H11_1161 are separated by 93 nucleotidesAc3H11_1161 and Ac3H11_1162 overlap by 48 nucleotides Ac3H11_1157 - Kynureninase (EC 3.7.1.3), at 109,362 to 110,672 _1157 Ac3H11_1158 - Kynurenine formamidase, bacterial (EC 3.5.1.9), at 110,761 to 111,414 _1158 Ac3H11_1159 - Sensory histidine kinase QseC, at 111,548 to 112,969 _1159 Ac3H11_1160 - probable two-component system response regulator, at 112,966 to 113,631 _1160 Ac3H11_1161 - hypothetical protein, at 113,725 to 113,877 _1161 Ac3H11_1162 - putative peptidase, at 113,830 to 115,740 _1162 Position (kb) 111 112 113Strain fitness (log2 ratio) -2 -1 0 1 2at 110.578 kb on + strandat 110.578 kb on + strandat 110.579 kb on - strandat 110.710 kb on + strandat 110.762 kb on + strandat 110.762 kb on + strandat 110.762 kb on + strandat 110.762 kb on + strandat 110.763 kb on - strandat 110.763 kb on - strandat 110.763 kb on - strandat 111.012 kb on - strand, within Ac3H11_1158at 111.056 kb on + strand, within Ac3H11_1158at 111.056 kb on + strand, within Ac3H11_1158at 111.056 kb on + strand, within Ac3H11_1158at 111.057 kb on - strand, within Ac3H11_1158at 111.057 kb on - strand, within Ac3H11_1158at 111.057 kb on - strand, within Ac3H11_1158at 111.057 kb on - strand, within Ac3H11_1158at 111.057 kb on - strand, within Ac3H11_1158at 111.215 kb on + strand, within Ac3H11_1158at 111.215 kb on + strand, within Ac3H11_1158at 111.216 kb on - strand, within Ac3H11_1158at 111.216 kb on - strand, within Ac3H11_1158at 111.216 kb on - strand, within Ac3H11_1158at 111.320 kb on + strand, within Ac3H11_1158at 111.320 kb on + strand, within Ac3H11_1158at 111.491 kb on + strandat 112.400 kb on + strand, within Ac3H11_1159at 112.400 kb on + strand, within Ac3H11_1159at 112.400 kb on + strand, within Ac3H11_1159at 112.400 kb on + strand, within Ac3H11_1159at 112.400 kb on + strand, within Ac3H11_1159at 112.401 kb on - strand, within Ac3H11_1159at 112.401 kb on - strand, within Ac3H11_1159at 112.425 kb on + strand, within Ac3H11_1159at 112.449 kb on + strand, within Ac3H11_1159at 112.449 kb on + strand, within Ac3H11_1159at 112.521 kb on + strand, within Ac3H11_1159at 112.521 kb on + strand, within Ac3H11_1159at 112.522 kb on - strand, within Ac3H11_1159at 112.522 kb on - strand, within Ac3H11_1159at 112.522 kb on - strand, within Ac3H11_1159at 112.628 kb on - strand, within Ac3H11_1159at 112.830 kb on + strandat 112.830 kb on + strandat 112.830 kb on + strandat 112.831 kb on - strandat 112.845 kb on + strandat 112.982 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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110,578 + +0.8
110,578 + -0.2
110,579 - -0.5
110,710 + +1.4
110,762 + -0.3
110,762 + -0.5
110,762 + +0.4
110,762 + +1.3
110,763 - +0.6
110,763 - -0.2
110,763 - +0.5
111,012 - Ac3H11_1158 0.38 -0.8
111,056 + Ac3H11_1158 0.45 +0.2
111,056 + Ac3H11_1158 0.45 +0.7
111,056 + Ac3H11_1158 0.45 +1.0
111,057 - Ac3H11_1158 0.45 -0.3
111,057 - Ac3H11_1158 0.45 -0.0
111,057 - Ac3H11_1158 0.45 +1.4
111,057 - Ac3H11_1158 0.45 +0.4
111,057 - Ac3H11_1158 0.45 -2.3
111,215 + Ac3H11_1158 0.69 -0.3
111,215 + Ac3H11_1158 0.69 -0.7
111,216 - Ac3H11_1158 0.70 -1.4
111,216 - Ac3H11_1158 0.70 -0.0
111,216 - Ac3H11_1158 0.70 -1.3
111,320 + Ac3H11_1158 0.85 -0.4
111,320 + Ac3H11_1158 0.85 -1.6
111,491 + +0.4
112,400 + Ac3H11_1159 0.60 -1.2
112,400 + Ac3H11_1159 0.60 +0.8
112,400 + Ac3H11_1159 0.60 +0.3
112,400 + Ac3H11_1159 0.60 +0.5
112,400 + Ac3H11_1159 0.60 +0.0
112,401 - Ac3H11_1159 0.60 +2.1
112,401 - Ac3H11_1159 0.60 +0.2
112,425 + Ac3H11_1159 0.62 -0.4
112,449 + Ac3H11_1159 0.63 -0.1
112,449 + Ac3H11_1159 0.63 +0.5
112,521 + Ac3H11_1159 0.68 +0.6
112,521 + Ac3H11_1159 0.68 +1.0
112,522 - Ac3H11_1159 0.68 -1.1
112,522 - Ac3H11_1159 0.68 +0.6
112,522 - Ac3H11_1159 0.68 -1.2
112,628 - Ac3H11_1159 0.76 -1.1
112,830 + +0.9
112,830 + +0.3
112,830 + -1.9
112,831 - +0.4
112,845 + -0.2
112,982 + -0.9

Or see this region's nucleotide sequence