Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22680

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22675 and AO353_22680 are separated by 63 nucleotidesAO353_22680 and AO353_22685 are separated by 319 nucleotides AO353_22675: AO353_22675 - hypothetical protein, at 4,963,788 to 4,964,834 _22675 AO353_22680: AO353_22680 - aldehyde dehydrogenase, at 4,964,898 to 4,966,523 _22680 AO353_22685: AO353_22685 - peroxidase, at 4,966,843 to 4,967,730 _22685 Position (kb) 4964 4965 4966 4967Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4963.993 kb on - strand, within AO353_22675at 4964.102 kb on + strand, within AO353_22675at 4964.102 kb on + strand, within AO353_22675at 4964.102 kb on + strand, within AO353_22675at 4964.103 kb on - strand, within AO353_22675at 4964.103 kb on - strandat 4964.103 kb on - strand, within AO353_22675at 4964.230 kb on + strand, within AO353_22675at 4964.231 kb on - strand, within AO353_22675at 4964.231 kb on - strand, within AO353_22675at 4964.231 kb on - strand, within AO353_22675at 4964.231 kb on - strand, within AO353_22675at 4964.272 kb on + strand, within AO353_22675at 4964.272 kb on + strand, within AO353_22675at 4964.273 kb on - strand, within AO353_22675at 4964.273 kb on - strand, within AO353_22675at 4964.273 kb on - strand, within AO353_22675at 4964.323 kb on + strand, within AO353_22675at 4964.323 kb on + strandat 4964.323 kb on + strand, within AO353_22675at 4964.324 kb on - strand, within AO353_22675at 4964.445 kb on + strand, within AO353_22675at 4964.446 kb on - strand, within AO353_22675at 4964.446 kb on - strand, within AO353_22675at 4964.446 kb on - strand, within AO353_22675at 4964.497 kb on + strand, within AO353_22675at 4964.497 kb on + strand, within AO353_22675at 4964.526 kb on - strand, within AO353_22675at 4964.526 kb on - strand, within AO353_22675at 4964.533 kb on + strand, within AO353_22675at 4964.533 kb on + strand, within AO353_22675at 4964.534 kb on - strand, within AO353_22675at 4964.534 kb on - strand, within AO353_22675at 4964.534 kb on - strand, within AO353_22675at 4964.611 kb on + strand, within AO353_22675at 4964.906 kb on + strandat 4964.906 kb on + strandat 4964.906 kb on + strandat 4964.906 kb on + strandat 4964.906 kb on + strandat 4964.906 kb on + strandat 4964.907 kb on - strandat 4965.217 kb on + strand, within AO353_22680at 4965.217 kb on + strand, within AO353_22680at 4965.217 kb on + strand, within AO353_22680at 4965.218 kb on - strand, within AO353_22680at 4965.218 kb on - strand, within AO353_22680at 4965.218 kb on - strand, within AO353_22680at 4965.254 kb on + strand, within AO353_22680at 4965.287 kb on - strand, within AO353_22680at 4965.287 kb on - strand, within AO353_22680at 4965.287 kb on - strand, within AO353_22680at 4965.313 kb on + strand, within AO353_22680at 4965.313 kb on + strand, within AO353_22680at 4965.314 kb on - strand, within AO353_22680at 4965.415 kb on + strand, within AO353_22680at 4965.415 kb on + strand, within AO353_22680at 4965.416 kb on - strand, within AO353_22680at 4965.805 kb on + strand, within AO353_22680at 4965.805 kb on + strand, within AO353_22680at 4965.958 kb on + strand, within AO353_22680at 4965.959 kb on - strand, within AO353_22680at 4965.959 kb on - strand, within AO353_22680at 4965.964 kb on + strand, within AO353_22680at 4965.965 kb on - strand, within AO353_22680at 4965.965 kb on - strand, within AO353_22680at 4965.965 kb on - strand, within AO353_22680at 4966.090 kb on + strand, within AO353_22680at 4966.091 kb on - strand, within AO353_22680at 4966.091 kb on - strand, within AO353_22680at 4966.091 kb on - strand, within AO353_22680at 4966.091 kb on - strand, within AO353_22680at 4966.101 kb on - strand, within AO353_22680at 4966.101 kb on - strand, within AO353_22680at 4966.264 kb on + strand, within AO353_22680at 4966.264 kb on + strand, within AO353_22680at 4966.264 kb on + strand, within AO353_22680at 4966.264 kb on + strand, within AO353_22680at 4966.265 kb on - strand, within AO353_22680at 4966.265 kb on - strand, within AO353_22680at 4966.366 kb on + strandat 4966.366 kb on + strandat 4966.367 kb on - strandat 4966.429 kb on + strandat 4966.429 kb on + strandat 4966.429 kb on + strandat 4966.429 kb on + strandat 4966.429 kb on + strandat 4966.429 kb on + strandat 4966.429 kb on + strandat 4966.429 kb on + strandat 4966.430 kb on - strandat 4966.430 kb on - strandat 4966.430 kb on - strandat 4966.430 kb on - strandat 4966.633 kb on + strandat 4966.633 kb on + strandat 4966.633 kb on + strandat 4966.633 kb on + strandat 4966.634 kb on - strandat 4966.667 kb on + strandat 4966.667 kb on + strandat 4966.667 kb on + strandat 4966.686 kb on - strandat 4966.849 kb on + strandat 4966.849 kb on + strandat 4966.849 kb on + strandat 4966.849 kb on + strandat 4966.850 kb on - strandat 4966.850 kb on - strandat 4966.850 kb on - strandat 4966.852 kb on + strandat 4966.852 kb on + strandat 4967.136 kb on + strand, within AO353_22685at 4967.137 kb on - strand, within AO353_22685at 4967.143 kb on - strand, within AO353_22685at 4967.211 kb on + strand, within AO353_22685at 4967.212 kb on - strand, within AO353_22685at 4967.212 kb on - strand, within AO353_22685at 4967.237 kb on - strand, within AO353_22685

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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4,963,993 - AO353_22675 0.20 -0.9
4,964,102 + AO353_22675 0.30 +0.9
4,964,102 + AO353_22675 0.30 -0.4
4,964,102 + AO353_22675 0.30 -0.4
4,964,103 - AO353_22675 0.30 -1.1
4,964,103 - +1.5
4,964,103 - AO353_22675 0.30 +1.3
4,964,230 + AO353_22675 0.42 -0.6
4,964,231 - AO353_22675 0.42 -0.4
4,964,231 - AO353_22675 0.42 +1.2
4,964,231 - AO353_22675 0.42 +0.1
4,964,231 - AO353_22675 0.42 +0.6
4,964,272 + AO353_22675 0.46 +0.4
4,964,272 + AO353_22675 0.46 -0.4
4,964,273 - AO353_22675 0.46 +0.4
4,964,273 - AO353_22675 0.46 -0.7
4,964,273 - AO353_22675 0.46 -0.5
4,964,323 + AO353_22675 0.51 -0.3
4,964,323 + +0.9
4,964,323 + AO353_22675 0.51 +0.9
4,964,324 - AO353_22675 0.51 +0.4
4,964,445 + AO353_22675 0.63 +0.2
4,964,446 - AO353_22675 0.63 -0.2
4,964,446 - AO353_22675 0.63 +0.7
4,964,446 - AO353_22675 0.63 +0.9
4,964,497 + AO353_22675 0.68 -0.0
4,964,497 + AO353_22675 0.68 -0.0
4,964,526 - AO353_22675 0.70 +1.7
4,964,526 - AO353_22675 0.70 -0.4
4,964,533 + AO353_22675 0.71 -0.3
4,964,533 + AO353_22675 0.71 +0.9
4,964,534 - AO353_22675 0.71 -1.1
4,964,534 - AO353_22675 0.71 -0.6
4,964,534 - AO353_22675 0.71 +1.7
4,964,611 + AO353_22675 0.79 +0.7
4,964,906 + +1.2
4,964,906 + +0.1
4,964,906 + -0.5
4,964,906 + +0.4
4,964,906 + +0.9
4,964,906 + +0.3
4,964,907 - +1.1
4,965,217 + AO353_22680 0.20 -0.8
4,965,217 + AO353_22680 0.20 -0.1
4,965,217 + AO353_22680 0.20 +0.8
4,965,218 - AO353_22680 0.20 +0.7
4,965,218 - AO353_22680 0.20 +0.9
4,965,218 - AO353_22680 0.20 +0.2
4,965,254 + AO353_22680 0.22 -0.4
4,965,287 - AO353_22680 0.24 +0.4
4,965,287 - AO353_22680 0.24 -2.0
4,965,287 - AO353_22680 0.24 +0.5
4,965,313 + AO353_22680 0.26 +0.4
4,965,313 + AO353_22680 0.26 +0.3
4,965,314 - AO353_22680 0.26 -0.6
4,965,415 + AO353_22680 0.32 +1.1
4,965,415 + AO353_22680 0.32 +1.5
4,965,416 - AO353_22680 0.32 +0.1
4,965,805 + AO353_22680 0.56 +0.7
4,965,805 + AO353_22680 0.56 +0.9
4,965,958 + AO353_22680 0.65 -1.0
4,965,959 - AO353_22680 0.65 -0.1
4,965,959 - AO353_22680 0.65 +2.1
4,965,964 + AO353_22680 0.66 +3.0
4,965,965 - AO353_22680 0.66 +1.0
4,965,965 - AO353_22680 0.66 +0.4
4,965,965 - AO353_22680 0.66 +0.9
4,966,090 + AO353_22680 0.73 +0.9
4,966,091 - AO353_22680 0.73 +0.1
4,966,091 - AO353_22680 0.73 +1.2
4,966,091 - AO353_22680 0.73 -0.1
4,966,091 - AO353_22680 0.73 -1.2
4,966,101 - AO353_22680 0.74 +0.7
4,966,101 - AO353_22680 0.74 +0.4
4,966,264 + AO353_22680 0.84 +0.7
4,966,264 + AO353_22680 0.84 +0.4
4,966,264 + AO353_22680 0.84 +0.4
4,966,264 + AO353_22680 0.84 +0.0
4,966,265 - AO353_22680 0.84 +0.9
4,966,265 - AO353_22680 0.84 -0.2
4,966,366 + +0.6
4,966,366 + +0.7
4,966,367 - +0.5
4,966,429 + +1.1
4,966,429 + +0.4
4,966,429 + +0.2
4,966,429 + -0.1
4,966,429 + -1.1
4,966,429 + +0.4
4,966,429 + +0.9
4,966,429 + -0.4
4,966,430 - +0.3
4,966,430 - +1.7
4,966,430 - +0.2
4,966,430 - +1.0
4,966,633 + -1.9
4,966,633 + -0.1
4,966,633 + +0.1
4,966,633 + -0.4
4,966,634 - -1.1
4,966,667 + +1.2
4,966,667 + +0.5
4,966,667 + -0.7
4,966,686 - -1.4
4,966,849 + +1.5
4,966,849 + -1.4
4,966,849 + +0.0
4,966,849 + -0.4
4,966,850 - -1.5
4,966,850 - -1.7
4,966,850 - -0.1
4,966,852 + +0.6
4,966,852 + +0.5
4,967,136 + AO353_22685 0.33 +0.0
4,967,137 - AO353_22685 0.33 -2.2
4,967,143 - AO353_22685 0.34 -1.0
4,967,211 + AO353_22685 0.41 -0.0
4,967,212 - AO353_22685 0.42 -1.1
4,967,212 - AO353_22685 0.42 -1.6
4,967,237 - AO353_22685 0.44 -0.7

Or see this region's nucleotide sequence