Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_05585 and AO353_05590 are separated by 4 nucleotides AO353_05590 and AO353_05595 are separated by 66 nucleotides AO353_05595 and AO353_05600 are separated by 16 nucleotides AO353_05600 and AO353_05605 are separated by 8 nucleotides
AO353_05585: AO353_05585 - preprotein translocase subunit SecG, at 1,234,293 to 1,234,676
_05585
AO353_05590: AO353_05590 - triosephosphate isomerase, at 1,234,681 to 1,235,436
_05590
AO353_05595: AO353_05595 - phosphoglucosamine mutase, at 1,235,503 to 1,236,840
_05595
AO353_05600: AO353_05600 - dihydropteroate synthase, at 1,236,857 to 1,237,708
_05600
AO353_05605: AO353_05605 - ATP-dependent metalloprotease, at 1,237,717 to 1,239,618
_05605
Position (kb)
1235
1236
1237 Strain fitness (log2 ratio)
-1
0
1 at 1235.425 kb on - strand at 1235.442 kb on - strand at 1235.442 kb on - strand at 1235.488 kb on - strand at 1235.488 kb on - strand at 1236.841 kb on - strand at 1236.841 kb on - strand at 1236.841 kb on - strand at 1236.859 kb on - strand at 1237.698 kb on - strand at 1237.698 kb on - strand at 1237.698 kb on - strand at 1237.698 kb on - strand at 1237.698 kb on - strand at 1237.698 kb on - strand at 1237.698 kb on - strand at 1237.719 kb on - strand at 1237.719 kb on - strand at 1237.719 kb on - strand at 1237.719 kb on - strand at 1237.719 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 1,235,425 - +1.0 1,235,442 - +0.4 1,235,442 - +0.8 1,235,488 - -1.1 1,235,488 - +0.6 1,236,841 - -0.1 1,236,841 - +0.6 1,236,841 - -0.2 1,236,859 - +1.0 1,237,698 - +0.1 1,237,698 - +0.2 1,237,698 - +0.9 1,237,698 - -0.7 1,237,698 - -0.3 1,237,698 - -0.7 1,237,698 - -1.4 1,237,719 - +0.7 1,237,719 - +0.8 1,237,719 - +0.4 1,237,719 - -1.5 1,237,719 - -1.0
Or see this region's nucleotide sequence