Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03140

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03130 and AO353_03135 overlap by 4 nucleotidesAO353_03135 and AO353_03140 overlap by 13 nucleotidesAO353_03140 and AO353_03145 are separated by 251 nucleotides AO353_03130: AO353_03130 - hypothetical protein, at 669,656 to 670,366 _03130 AO353_03135: AO353_03135 - hypothetical protein, at 670,363 to 670,695 _03135 AO353_03140: AO353_03140 - hypothetical protein, at 670,683 to 671,012 _03140 AO353_03145: AO353_03145 - glycerophosphodiester phosphodiesterase, at 671,264 to 672,391 _03145 Position (kb) 670 671 672Strain fitness (log2 ratio) -1 0 1 2at 669.698 kb on + strandat 669.965 kb on + strand, within AO353_03130at 669.966 kb on - strand, within AO353_03130at 670.115 kb on + strand, within AO353_03130at 670.116 kb on - strand, within AO353_03130at 670.142 kb on + strand, within AO353_03130at 670.233 kb on + strand, within AO353_03130at 670.234 kb on - strand, within AO353_03130at 670.234 kb on - strand, within AO353_03130at 670.234 kb on - strand, within AO353_03130at 670.391 kb on - strandat 670.393 kb on + strandat 670.393 kb on + strandat 670.394 kb on - strandat 670.394 kb on - strandat 670.394 kb on - strandat 670.394 kb on - strandat 670.401 kb on - strand, within AO353_03135at 670.438 kb on + strand, within AO353_03135at 670.543 kb on + strand, within AO353_03135at 670.543 kb on + strand, within AO353_03135at 670.544 kb on - strand, within AO353_03135at 670.627 kb on + strand, within AO353_03135at 670.628 kb on - strand, within AO353_03135at 670.628 kb on - strand, within AO353_03135at 670.628 kb on - strand, within AO353_03135at 670.628 kb on - strand, within AO353_03135at 670.628 kb on - strand, within AO353_03135at 670.669 kb on + strandat 670.670 kb on - strandat 670.670 kb on - strandat 670.670 kb on - strandat 670.670 kb on - strandat 670.670 kb on - strandat 670.742 kb on + strand, within AO353_03140at 670.742 kb on + strand, within AO353_03140at 670.742 kb on + strand, within AO353_03140at 670.742 kb on + strand, within AO353_03140at 670.743 kb on - strand, within AO353_03140at 670.744 kb on + strand, within AO353_03140at 670.744 kb on + strand, within AO353_03140at 670.744 kb on + strand, within AO353_03140at 670.744 kb on + strand, within AO353_03140at 670.745 kb on - strand, within AO353_03140at 670.745 kb on - strand, within AO353_03140at 670.745 kb on - strand, within AO353_03140at 670.930 kb on + strand, within AO353_03140at 670.931 kb on - strand, within AO353_03140at 670.991 kb on + strandat 670.991 kb on + strandat 670.991 kb on + strandat 670.992 kb on - strandat 670.992 kb on - strandat 670.992 kb on - strandat 670.992 kb on - strandat 670.992 kb on - strandat 671.015 kb on + strandat 671.015 kb on + strandat 671.015 kb on + strandat 671.015 kb on + strandat 671.015 kb on + strandat 671.016 kb on - strandat 671.058 kb on + strandat 671.058 kb on + strandat 671.059 kb on - strandat 671.059 kb on - strandat 671.059 kb on - strandat 671.059 kb on - strandat 671.059 kb on - strandat 671.129 kb on - strandat 671.178 kb on + strandat 671.179 kb on - strandat 671.218 kb on + strandat 671.225 kb on + strandat 671.225 kb on + strandat 671.225 kb on + strandat 671.225 kb on + strandat 671.225 kb on + strandat 671.226 kb on - strandat 671.226 kb on - strandat 671.226 kb on - strandat 671.226 kb on - strandat 671.272 kb on + strandat 671.273 kb on - strandat 671.273 kb on - strandat 671.276 kb on + strandat 671.276 kb on + strandat 671.277 kb on - strandat 671.277 kb on - strandat 671.277 kb on - strandat 671.444 kb on + strand, within AO353_03145at 671.444 kb on + strand, within AO353_03145at 671.474 kb on + strand, within AO353_03145at 671.474 kb on + strand, within AO353_03145at 671.617 kb on + strand, within AO353_03145at 671.617 kb on + strand, within AO353_03145at 671.617 kb on + strand, within AO353_03145at 671.617 kb on + strandat 671.617 kb on + strand, within AO353_03145at 671.617 kb on + strand, within AO353_03145at 671.618 kb on - strand, within AO353_03145at 671.678 kb on + strand, within AO353_03145at 671.756 kb on + strand, within AO353_03145at 671.756 kb on + strand, within AO353_03145at 671.756 kb on + strand, within AO353_03145at 671.757 kb on - strand, within AO353_03145at 671.757 kb on - strand, within AO353_03145at 671.757 kb on - strand, within AO353_03145at 671.757 kb on - strand, within AO353_03145at 671.757 kb on - strand, within AO353_03145at 671.888 kb on - strand, within AO353_03145at 671.888 kb on - strand, within AO353_03145

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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669,698 + +0.3
669,965 + AO353_03130 0.43 -0.0
669,966 - AO353_03130 0.44 +0.3
670,115 + AO353_03130 0.65 -0.3
670,116 - AO353_03130 0.65 -0.7
670,142 + AO353_03130 0.68 +0.2
670,233 + AO353_03130 0.81 +0.7
670,234 - AO353_03130 0.81 +1.0
670,234 - AO353_03130 0.81 -0.0
670,234 - AO353_03130 0.81 -1.0
670,391 - -0.9
670,393 + -0.9
670,393 + -0.4
670,394 - +1.9
670,394 - -0.2
670,394 - -0.6
670,394 - +0.6
670,401 - AO353_03135 0.11 -0.5
670,438 + AO353_03135 0.23 -0.5
670,543 + AO353_03135 0.54 -0.2
670,543 + AO353_03135 0.54 +0.3
670,544 - AO353_03135 0.54 -1.0
670,627 + AO353_03135 0.79 +0.2
670,628 - AO353_03135 0.80 -0.2
670,628 - AO353_03135 0.80 +1.2
670,628 - AO353_03135 0.80 +0.4
670,628 - AO353_03135 0.80 -0.6
670,628 - AO353_03135 0.80 -1.3
670,669 + +0.1
670,670 - -0.4
670,670 - -0.5
670,670 - +0.1
670,670 - -0.0
670,670 - -0.2
670,742 + AO353_03140 0.18 +1.6
670,742 + AO353_03140 0.18 +0.5
670,742 + AO353_03140 0.18 +0.2
670,742 + AO353_03140 0.18 +0.2
670,743 - AO353_03140 0.18 -0.1
670,744 + AO353_03140 0.18 +0.2
670,744 + AO353_03140 0.18 +0.2
670,744 + AO353_03140 0.18 +0.5
670,744 + AO353_03140 0.18 +1.7
670,745 - AO353_03140 0.19 -1.5
670,745 - AO353_03140 0.19 +1.1
670,745 - AO353_03140 0.19 -1.0
670,930 + AO353_03140 0.75 +0.6
670,931 - AO353_03140 0.75 +0.8
670,991 + +0.8
670,991 + -1.2
670,991 + -0.7
670,992 - -1.6
670,992 - +1.0
670,992 - -0.8
670,992 - +1.6
670,992 - -0.3
671,015 + +1.1
671,015 + +1.7
671,015 + -0.6
671,015 + +0.6
671,015 + -0.8
671,016 - +0.8
671,058 + -0.0
671,058 + -1.5
671,059 - -1.1
671,059 - -0.1
671,059 - -1.3
671,059 - +1.3
671,059 - +0.4
671,129 - -0.2
671,178 + +0.2
671,179 - +1.3
671,218 + +0.1
671,225 + -0.0
671,225 + -1.3
671,225 + -0.2
671,225 + -0.0
671,225 + +0.2
671,226 - -0.2
671,226 - -0.5
671,226 - -0.0
671,226 - +0.1
671,272 + +0.2
671,273 - -0.2
671,273 - -0.2
671,276 + +1.3
671,276 + -0.7
671,277 - -0.0
671,277 - +0.3
671,277 - +1.2
671,444 + AO353_03145 0.16 -0.1
671,444 + AO353_03145 0.16 +0.6
671,474 + AO353_03145 0.19 +0.4
671,474 + AO353_03145 0.19 +1.4
671,617 + AO353_03145 0.31 +0.1
671,617 + AO353_03145 0.31 +0.4
671,617 + AO353_03145 0.31 +0.0
671,617 + +1.4
671,617 + AO353_03145 0.31 -1.0
671,617 + AO353_03145 0.31 +0.8
671,618 - AO353_03145 0.31 +0.2
671,678 + AO353_03145 0.37 +2.0
671,756 + AO353_03145 0.44 +0.3
671,756 + AO353_03145 0.44 +0.1
671,756 + AO353_03145 0.44 +2.2
671,757 - AO353_03145 0.44 +0.1
671,757 - AO353_03145 0.44 -0.6
671,757 - AO353_03145 0.44 -1.6
671,757 - AO353_03145 0.44 -0.5
671,757 - AO353_03145 0.44 -0.9
671,888 - AO353_03145 0.55 -0.5
671,888 - AO353_03145 0.55 -1.1

Or see this region's nucleotide sequence