Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01735

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01725 and AO353_01730 overlap by 4 nucleotidesAO353_01730 and AO353_01735 are separated by 31 nucleotidesAO353_01735 and AO353_01740 are separated by 196 nucleotides AO353_01725: AO353_01725 - phosphohistidine phosphatase, at 362,322 to 362,771 _01725 AO353_01730: AO353_01730 - lipase, at 362,768 to 363,115 _01730 AO353_01735: AO353_01735 - glycerol-3-phosphate dehydrogenase, at 363,147 to 364,172 _01735 AO353_01740: AO353_01740 - TonB-dependent receptor, at 364,369 to 366,492 _01740 Position (kb) 363 364 365Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 362.302 kb on - strandat 362.339 kb on + strandat 362.440 kb on + strand, within AO353_01725at 362.620 kb on + strand, within AO353_01725at 362.621 kb on - strand, within AO353_01725at 362.621 kb on - strand, within AO353_01725at 362.621 kb on - strand, within AO353_01725at 362.621 kb on - strand, within AO353_01725at 362.771 kb on + strandat 362.772 kb on - strandat 362.772 kb on - strandat 362.772 kb on - strandat 362.813 kb on + strand, within AO353_01730at 362.814 kb on - strand, within AO353_01730at 362.973 kb on + strand, within AO353_01730at 362.973 kb on + strand, within AO353_01730at 362.973 kb on + strand, within AO353_01730at 362.973 kb on + strand, within AO353_01730at 362.973 kb on + strand, within AO353_01730at 362.974 kb on - strand, within AO353_01730at 362.974 kb on - strand, within AO353_01730at 362.974 kb on - strand, within AO353_01730at 362.974 kb on - strand, within AO353_01730at 362.974 kb on - strand, within AO353_01730at 362.974 kb on - strand, within AO353_01730at 362.985 kb on + strand, within AO353_01730at 362.985 kb on + strand, within AO353_01730at 362.985 kb on + strand, within AO353_01730at 362.986 kb on - strand, within AO353_01730at 362.986 kb on - strand, within AO353_01730at 363.048 kb on + strand, within AO353_01730at 363.048 kb on + strand, within AO353_01730at 363.048 kb on + strand, within AO353_01730at 363.048 kb on + strand, within AO353_01730at 363.048 kb on + strand, within AO353_01730at 363.048 kb on + strand, within AO353_01730at 363.048 kb on + strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.087 kb on + strandat 363.087 kb on + strandat 363.087 kb on + strandat 363.087 kb on + strandat 363.087 kb on + strandat 363.088 kb on - strandat 363.099 kb on - strandat 363.099 kb on - strandat 363.136 kb on - strandat 363.144 kb on + strandat 363.145 kb on - strandat 363.647 kb on - strandat 364.173 kb on - strandat 364.173 kb on - strandat 364.212 kb on + strandat 364.213 kb on - strandat 364.213 kb on - strandat 364.213 kb on - strandat 364.214 kb on + strandat 364.214 kb on + strandat 364.214 kb on + strandat 364.215 kb on - strandat 364.215 kb on - strandat 364.215 kb on - strandat 364.215 kb on - strandat 364.245 kb on + strandat 364.252 kb on + strandat 364.264 kb on + strandat 364.264 kb on + strandat 364.265 kb on - strandat 364.265 kb on - strandat 364.265 kb on - strandat 364.365 kb on + strandat 364.478 kb on + strandat 364.478 kb on + strandat 364.478 kb on + strandat 364.478 kb on + strandat 364.479 kb on - strandat 364.479 kb on - strandat 364.586 kb on + strand, within AO353_01740at 364.587 kb on - strand, within AO353_01740at 364.587 kb on - strand, within AO353_01740at 364.587 kb on - strand, within AO353_01740at 364.648 kb on + strand, within AO353_01740at 364.648 kb on + strand, within AO353_01740at 364.648 kb on + strand, within AO353_01740at 364.648 kb on + strand, within AO353_01740at 364.648 kb on + strand, within AO353_01740at 364.648 kb on + strand, within AO353_01740at 364.648 kb on + strand, within AO353_01740at 364.648 kb on + strand, within AO353_01740at 364.649 kb on - strand, within AO353_01740at 364.649 kb on - strand, within AO353_01740at 364.649 kb on - strand, within AO353_01740at 364.649 kb on - strand, within AO353_01740at 364.649 kb on - strand, within AO353_01740at 364.649 kb on - strand, within AO353_01740at 364.649 kb on - strand, within AO353_01740at 364.649 kb on - strand, within AO353_01740at 364.649 kb on - strand, within AO353_01740at 364.711 kb on + strand, within AO353_01740at 364.810 kb on + strand, within AO353_01740at 364.810 kb on + strand, within AO353_01740at 364.810 kb on + strand, within AO353_01740at 364.811 kb on - strand, within AO353_01740at 364.811 kb on - strand, within AO353_01740at 365.020 kb on + strand, within AO353_01740at 365.134 kb on + strand, within AO353_01740at 365.134 kb on + strand, within AO353_01740at 365.134 kb on + strand, within AO353_01740at 365.134 kb on + strand, within AO353_01740at 365.134 kb on + strand, within AO353_01740at 365.134 kb on + strand, within AO353_01740at 365.134 kb on + strand, within AO353_01740at 365.135 kb on - strand, within AO353_01740at 365.135 kb on - strand, within AO353_01740at 365.135 kb on - strand, within AO353_01740at 365.135 kb on - strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.136 kb on + strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.137 kb on - strand, within AO353_01740at 365.141 kb on - strand, within AO353_01740at 365.163 kb on + strand, within AO353_01740at 365.163 kb on + strand, within AO353_01740at 365.164 kb on - strand, within AO353_01740at 365.164 kb on - strand, within AO353_01740

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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362,302 - +0.4
362,339 + +0.5
362,440 + AO353_01725 0.26 +1.6
362,620 + AO353_01725 0.66 +1.6
362,621 - AO353_01725 0.66 -0.5
362,621 - AO353_01725 0.66 +0.6
362,621 - AO353_01725 0.66 -1.3
362,621 - AO353_01725 0.66 -0.2
362,771 + +0.3
362,772 - -2.9
362,772 - -0.8
362,772 - +0.1
362,813 + AO353_01730 0.13 -0.4
362,814 - AO353_01730 0.13 +1.5
362,973 + AO353_01730 0.59 -0.5
362,973 + AO353_01730 0.59 -1.6
362,973 + AO353_01730 0.59 -1.3
362,973 + AO353_01730 0.59 -1.3
362,973 + AO353_01730 0.59 -0.3
362,974 - AO353_01730 0.59 +1.1
362,974 - AO353_01730 0.59 +0.5
362,974 - AO353_01730 0.59 +0.2
362,974 - AO353_01730 0.59 -0.5
362,974 - AO353_01730 0.59 -0.2
362,974 - AO353_01730 0.59 -0.5
362,985 + AO353_01730 0.62 +0.8
362,985 + AO353_01730 0.62 +0.2
362,985 + AO353_01730 0.62 -0.2
362,986 - AO353_01730 0.63 -0.4
362,986 - AO353_01730 0.63 -0.7
363,048 + AO353_01730 0.80 -1.9
363,048 + AO353_01730 0.80 -0.6
363,048 + AO353_01730 0.80 +0.3
363,048 + AO353_01730 0.80 -0.1
363,048 + AO353_01730 0.80 -0.6
363,048 + AO353_01730 0.80 +0.2
363,048 + AO353_01730 0.80 +1.9
363,049 - AO353_01730 0.81 +1.5
363,049 - AO353_01730 0.81 -0.4
363,049 - AO353_01730 0.81 +1.1
363,049 - AO353_01730 0.81 -0.3
363,049 - AO353_01730 0.81 +1.2
363,049 - AO353_01730 0.81 -0.1
363,049 - AO353_01730 0.81 +0.5
363,049 - AO353_01730 0.81 -0.3
363,049 - AO353_01730 0.81 -0.8
363,049 - AO353_01730 0.81 +0.3
363,049 - AO353_01730 0.81 -2.1
363,049 - AO353_01730 0.81 -0.9
363,049 - AO353_01730 0.81 -0.5
363,049 - AO353_01730 0.81 -1.4
363,049 - AO353_01730 0.81 -0.3
363,049 - AO353_01730 0.81 +0.1
363,049 - AO353_01730 0.81 +1.7
363,049 - AO353_01730 0.81 -0.4
363,087 + -0.9
363,087 + -1.3
363,087 + -0.6
363,087 + -0.6
363,087 + +0.9
363,088 - -0.4
363,099 - -0.4
363,099 - -0.9
363,136 - -2.2
363,144 + -0.8
363,145 - -0.8
363,647 - -0.1
364,173 - -2.2
364,173 - +0.1
364,212 + -1.4
364,213 - +0.3
364,213 - -0.7
364,213 - +0.6
364,214 + -0.6
364,214 + +1.4
364,214 + -0.5
364,215 - +0.9
364,215 - -0.9
364,215 - +0.0
364,215 - +1.5
364,245 + -0.6
364,252 + -0.8
364,264 + +0.5
364,264 + +0.6
364,265 - +0.0
364,265 - +1.0
364,265 - -0.7
364,365 + -1.2
364,478 + +1.6
364,478 + -1.2
364,478 + +1.0
364,478 + -0.3
364,479 - +0.5
364,479 - +0.1
364,586 + AO353_01740 0.10 -1.0
364,587 - AO353_01740 0.10 +1.4
364,587 - AO353_01740 0.10 -0.0
364,587 - AO353_01740 0.10 +0.5
364,648 + AO353_01740 0.13 -0.1
364,648 + AO353_01740 0.13 +1.1
364,648 + AO353_01740 0.13 -1.7
364,648 + AO353_01740 0.13 +1.0
364,648 + AO353_01740 0.13 -0.8
364,648 + AO353_01740 0.13 +0.3
364,648 + AO353_01740 0.13 +0.2
364,648 + AO353_01740 0.13 +0.4
364,649 - AO353_01740 0.13 +0.1
364,649 - AO353_01740 0.13 +0.1
364,649 - AO353_01740 0.13 -0.1
364,649 - AO353_01740 0.13 -1.6
364,649 - AO353_01740 0.13 -0.8
364,649 - AO353_01740 0.13 +1.2
364,649 - AO353_01740 0.13 +0.3
364,649 - AO353_01740 0.13 +0.2
364,649 - AO353_01740 0.13 +0.0
364,711 + AO353_01740 0.16 -1.1
364,810 + AO353_01740 0.21 +0.0
364,810 + AO353_01740 0.21 -0.3
364,810 + AO353_01740 0.21 +1.2
364,811 - AO353_01740 0.21 +1.7
364,811 - AO353_01740 0.21 -0.2
365,020 + AO353_01740 0.31 +0.8
365,134 + AO353_01740 0.36 -0.5
365,134 + AO353_01740 0.36 -0.5
365,134 + AO353_01740 0.36 +1.3
365,134 + AO353_01740 0.36 +0.6
365,134 + AO353_01740 0.36 +1.6
365,134 + AO353_01740 0.36 +1.1
365,134 + AO353_01740 0.36 -0.7
365,135 - AO353_01740 0.36 -0.7
365,135 - AO353_01740 0.36 +0.1
365,135 - AO353_01740 0.36 +2.1
365,135 - AO353_01740 0.36 +0.1
365,136 + AO353_01740 0.36 -1.3
365,136 + AO353_01740 0.36 -0.8
365,136 + AO353_01740 0.36 +0.7
365,136 + AO353_01740 0.36 -0.3
365,136 + AO353_01740 0.36 +0.9
365,136 + AO353_01740 0.36 +0.3
365,136 + AO353_01740 0.36 -0.4
365,136 + AO353_01740 0.36 +0.3
365,136 + AO353_01740 0.36 -0.8
365,136 + AO353_01740 0.36 -2.4
365,136 + AO353_01740 0.36 -0.9
365,136 + AO353_01740 0.36 -0.4
365,136 + AO353_01740 0.36 -0.5
365,136 + AO353_01740 0.36 +0.7
365,136 + AO353_01740 0.36 +1.1
365,136 + AO353_01740 0.36 -0.8
365,136 + AO353_01740 0.36 +0.3
365,137 - AO353_01740 0.36 +0.9
365,137 - AO353_01740 0.36 +0.2
365,137 - AO353_01740 0.36 -0.1
365,137 - AO353_01740 0.36 -0.3
365,137 - AO353_01740 0.36 +1.6
365,137 - AO353_01740 0.36 +0.0
365,137 - AO353_01740 0.36 -0.3
365,137 - AO353_01740 0.36 -0.6
365,137 - AO353_01740 0.36 +0.5
365,137 - AO353_01740 0.36 -0.9
365,137 - AO353_01740 0.36 -0.1
365,137 - AO353_01740 0.36 +0.0
365,137 - AO353_01740 0.36 +0.3
365,137 - AO353_01740 0.36 +0.3
365,137 - AO353_01740 0.36 -2.0
365,137 - AO353_01740 0.36 +1.0
365,137 - AO353_01740 0.36 +0.9
365,141 - AO353_01740 0.36 +2.3
365,163 + AO353_01740 0.37 +0.8
365,163 + AO353_01740 0.37 -0.5
365,164 - AO353_01740 0.37 +0.9
365,164 - AO353_01740 0.37 +0.4

Or see this region's nucleotide sequence