Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00910

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00900 and AO353_00905 overlap by 4 nucleotidesAO353_00905 and AO353_00910 are separated by 270 nucleotidesAO353_00910 and AO353_00915 are separated by 5 nucleotides AO353_00900: AO353_00900 - 2-methylisocitrate lyase, at 205,349 to 206,242 _00900 AO353_00905: AO353_00905 - GntR family transcriptional regulator, at 206,239 to 206,961 _00905 AO353_00910: AO353_00910 - ATP-dependent zinc protease, at 207,232 to 207,771 _00910 AO353_00915: AO353_00915 - hypothetical protein, at 207,777 to 209,309 _00915 Position (kb) 207 208Strain fitness (log2 ratio) -2 -1 0 1 2 3at 206.286 kb on - strandat 206.441 kb on + strand, within AO353_00905at 206.442 kb on - strand, within AO353_00905at 206.442 kb on - strand, within AO353_00905at 206.459 kb on + strand, within AO353_00905at 206.459 kb on + strand, within AO353_00905at 206.460 kb on - strand, within AO353_00905at 206.550 kb on - strand, within AO353_00905at 206.688 kb on - strand, within AO353_00905at 206.734 kb on + strand, within AO353_00905at 206.735 kb on - strand, within AO353_00905at 206.814 kb on - strand, within AO353_00905at 207.054 kb on + strandat 207.067 kb on + strandat 207.067 kb on + strandat 207.068 kb on - strandat 207.068 kb on - strandat 207.075 kb on - strandat 207.078 kb on + strandat 207.079 kb on - strandat 207.079 kb on - strandat 207.106 kb on - strandat 207.106 kb on - strandat 207.119 kb on + strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.153 kb on - strandat 207.164 kb on + strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.231 kb on + strandat 207.231 kb on + strandat 207.231 kb on + strandat 207.231 kb on + strandat 207.232 kb on - strandat 207.232 kb on - strandat 207.232 kb on - strandat 207.232 kb on - strandat 207.232 kb on - strandat 207.232 kb on - strandat 207.266 kb on + strandat 207.313 kb on + strand, within AO353_00910at 207.313 kb on + strand, within AO353_00910at 207.313 kb on + strand, within AO353_00910at 207.313 kb on + strand, within AO353_00910at 207.313 kb on + strand, within AO353_00910at 207.314 kb on - strand, within AO353_00910at 207.328 kb on + strand, within AO353_00910at 207.328 kb on + strand, within AO353_00910at 207.411 kb on + strand, within AO353_00910at 207.455 kb on - strand, within AO353_00910at 207.562 kb on + strand, within AO353_00910at 207.562 kb on + strand, within AO353_00910at 207.563 kb on - strand, within AO353_00910at 207.563 kb on - strand, within AO353_00910at 207.563 kb on - strand, within AO353_00910at 207.563 kb on - strand, within AO353_00910at 207.563 kb on - strand, within AO353_00910at 207.563 kb on - strand, within AO353_00910at 207.591 kb on + strand, within AO353_00910at 207.592 kb on - strand, within AO353_00910at 207.620 kb on + strand, within AO353_00910at 207.620 kb on + strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.718 kb on - strandat 207.718 kb on - strandat 207.718 kb on - strandat 207.721 kb on + strandat 207.721 kb on + strandat 207.721 kb on + strandat 207.721 kb on + strandat 207.721 kb on + strandat 207.721 kb on + strandat 207.722 kb on - strandat 207.722 kb on - strandat 207.722 kb on - strandat 207.722 kb on - strandat 207.769 kb on + strandat 207.769 kb on + strandat 207.769 kb on + strandat 207.769 kb on + strandat 207.769 kb on + strandat 207.769 kb on + strandat 207.770 kb on - strandat 207.770 kb on - strandat 207.817 kb on + strandat 207.849 kb on + strandat 207.990 kb on + strand, within AO353_00915at 207.991 kb on - strand, within AO353_00915at 207.991 kb on - strand, within AO353_00915at 208.013 kb on + strand, within AO353_00915at 208.013 kb on + strand, within AO353_00915at 208.013 kb on + strand, within AO353_00915at 208.014 kb on - strand, within AO353_00915at 208.014 kb on - strand, within AO353_00915at 208.014 kb on - strand, within AO353_00915at 208.026 kb on + strand, within AO353_00915at 208.026 kb on + strand, within AO353_00915at 208.026 kb on + strand, within AO353_00915at 208.026 kb on + strand, within AO353_00915at 208.026 kb on + strand, within AO353_00915at 208.026 kb on + strand, within AO353_00915at 208.027 kb on - strand, within AO353_00915at 208.027 kb on - strand, within AO353_00915at 208.027 kb on - strand, within AO353_00915at 208.027 kb on - strand, within AO353_00915at 208.027 kb on - strand, within AO353_00915at 208.027 kb on - strand, within AO353_00915at 208.027 kb on - strand, within AO353_00915at 208.027 kb on - strand, within AO353_00915at 208.027 kb on - strand, within AO353_00915at 208.027 kb on - strand, within AO353_00915at 208.027 kb on - strand, within AO353_00915at 208.027 kb on - strand, within AO353_00915at 208.027 kb on - strand, within AO353_00915at 208.107 kb on + strand, within AO353_00915at 208.107 kb on + strand, within AO353_00915at 208.107 kb on + strand, within AO353_00915at 208.107 kb on + strand, within AO353_00915at 208.108 kb on - strand, within AO353_00915at 208.108 kb on - strand, within AO353_00915at 208.134 kb on + strand, within AO353_00915at 208.134 kb on + strand, within AO353_00915at 208.390 kb on + strand, within AO353_00915at 208.390 kb on + strand, within AO353_00915at 208.390 kb on + strand, within AO353_00915at 208.391 kb on - strand, within AO353_00915at 208.391 kb on - strand, within AO353_00915at 208.391 kb on - strand, within AO353_00915at 208.391 kb on - strand, within AO353_00915at 208.461 kb on - strand, within AO353_00915at 208.461 kb on - strand, within AO353_00915at 208.485 kb on + strand, within AO353_00915at 208.486 kb on - strand, within AO353_00915at 208.486 kb on - strand, within AO353_00915at 208.486 kb on - strand, within AO353_00915at 208.486 kb on - strand, within AO353_00915at 208.486 kb on - strand, within AO353_00915at 208.655 kb on + strand, within AO353_00915at 208.655 kb on + strand, within AO353_00915at 208.677 kb on + strand, within AO353_00915at 208.687 kb on - strand, within AO353_00915

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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206,286 - -0.5
206,441 + AO353_00905 0.28 +0.0
206,442 - AO353_00905 0.28 +0.3
206,442 - AO353_00905 0.28 +0.7
206,459 + AO353_00905 0.30 +0.3
206,459 + AO353_00905 0.30 +0.8
206,460 - AO353_00905 0.31 -0.3
206,550 - AO353_00905 0.43 +0.5
206,688 - AO353_00905 0.62 +0.9
206,734 + AO353_00905 0.68 +1.0
206,735 - AO353_00905 0.69 +0.9
206,814 - AO353_00905 0.80 -0.6
207,054 + -0.7
207,067 + +0.3
207,067 + +1.2
207,068 - -0.5
207,068 - -0.3
207,075 - +1.0
207,078 + -0.6
207,079 - +0.4
207,079 - +0.2
207,106 - -0.5
207,106 - -1.0
207,119 + -0.2
207,120 - -0.2
207,120 - -0.7
207,120 - -0.5
207,120 - +0.3
207,120 - -0.3
207,120 - -2.1
207,153 - -0.8
207,164 + +0.7
207,165 - -2.0
207,165 - -0.1
207,165 - -1.9
207,165 - -1.2
207,165 - -0.5
207,165 - +0.0
207,165 - -1.4
207,231 + +1.1
207,231 + +0.0
207,231 + +0.4
207,231 + +0.1
207,232 - +0.5
207,232 - -0.7
207,232 - -0.9
207,232 - +0.5
207,232 - -1.6
207,232 - -0.5
207,266 + +1.1
207,313 + AO353_00910 0.15 +0.9
207,313 + AO353_00910 0.15 +1.3
207,313 + AO353_00910 0.15 +1.3
207,313 + AO353_00910 0.15 +1.0
207,313 + AO353_00910 0.15 +0.8
207,314 - AO353_00910 0.15 -0.7
207,328 + AO353_00910 0.18 +0.2
207,328 + AO353_00910 0.18 +2.6
207,411 + AO353_00910 0.33 +1.1
207,455 - AO353_00910 0.41 -2.7
207,562 + AO353_00910 0.61 +1.8
207,562 + AO353_00910 0.61 +1.0
207,563 - AO353_00910 0.61 -1.2
207,563 - AO353_00910 0.61 +0.3
207,563 - AO353_00910 0.61 -0.2
207,563 - AO353_00910 0.61 -0.2
207,563 - AO353_00910 0.61 -1.9
207,563 - AO353_00910 0.61 -0.2
207,591 + AO353_00910 0.66 +2.2
207,592 - AO353_00910 0.67 +0.7
207,620 + AO353_00910 0.72 +1.3
207,620 + AO353_00910 0.72 -1.7
207,621 - AO353_00910 0.72 +0.5
207,621 - AO353_00910 0.72 -0.9
207,621 - AO353_00910 0.72 +1.4
207,621 - AO353_00910 0.72 -0.8
207,621 - AO353_00910 0.72 -0.4
207,621 - AO353_00910 0.72 +0.0
207,621 - AO353_00910 0.72 -0.0
207,621 - AO353_00910 0.72 +0.5
207,621 - AO353_00910 0.72 +0.2
207,621 - AO353_00910 0.72 +0.3
207,621 - AO353_00910 0.72 -1.2
207,621 - AO353_00910 0.72 -0.2
207,717 + AO353_00910 0.90 -0.4
207,717 + AO353_00910 0.90 +0.7
207,717 + AO353_00910 0.90 +1.3
207,717 + AO353_00910 0.90 +0.3
207,717 + AO353_00910 0.90 +0.6
207,717 + AO353_00910 0.90 +1.6
207,717 + AO353_00910 0.90 +0.7
207,717 + AO353_00910 0.90 +1.2
207,718 - -1.6
207,718 - -0.7
207,718 - -0.4
207,721 + +1.1
207,721 + -0.1
207,721 + +1.5
207,721 + +0.5
207,721 + +3.7
207,721 + -0.7
207,722 - +0.1
207,722 - -0.2
207,722 - -1.2
207,722 - +1.1
207,769 + +0.8
207,769 + -1.1
207,769 + +1.7
207,769 + -0.5
207,769 + +0.3
207,769 + +0.1
207,770 - +0.0
207,770 - -0.2
207,817 + +0.5
207,849 + -0.6
207,990 + AO353_00915 0.14 +0.2
207,991 - AO353_00915 0.14 -2.3
207,991 - AO353_00915 0.14 +0.3
208,013 + AO353_00915 0.15 -0.3
208,013 + AO353_00915 0.15 +0.5
208,013 + AO353_00915 0.15 +0.8
208,014 - AO353_00915 0.15 +0.3
208,014 - AO353_00915 0.15 +1.8
208,014 - AO353_00915 0.15 -0.2
208,026 + AO353_00915 0.16 +1.3
208,026 + AO353_00915 0.16 -0.1
208,026 + AO353_00915 0.16 -0.5
208,026 + AO353_00915 0.16 +0.4
208,026 + AO353_00915 0.16 +0.5
208,026 + AO353_00915 0.16 -0.3
208,027 - AO353_00915 0.16 -1.0
208,027 - AO353_00915 0.16 +0.6
208,027 - AO353_00915 0.16 -1.2
208,027 - AO353_00915 0.16 +0.1
208,027 - AO353_00915 0.16 +0.1
208,027 - AO353_00915 0.16 -1.0
208,027 - AO353_00915 0.16 +1.2
208,027 - AO353_00915 0.16 -1.7
208,027 - AO353_00915 0.16 -0.3
208,027 - AO353_00915 0.16 +0.4
208,027 - AO353_00915 0.16 -0.7
208,027 - AO353_00915 0.16 -1.5
208,027 - AO353_00915 0.16 -0.7
208,107 + AO353_00915 0.22 -0.5
208,107 + AO353_00915 0.22 -0.2
208,107 + AO353_00915 0.22 -1.6
208,107 + AO353_00915 0.22 -0.9
208,108 - AO353_00915 0.22 -0.7
208,108 - AO353_00915 0.22 -0.7
208,134 + AO353_00915 0.23 -0.2
208,134 + AO353_00915 0.23 +0.5
208,390 + AO353_00915 0.40 -2.0
208,390 + AO353_00915 0.40 -0.8
208,390 + AO353_00915 0.40 -0.9
208,391 - AO353_00915 0.40 -0.5
208,391 - AO353_00915 0.40 -0.8
208,391 - AO353_00915 0.40 -0.8
208,391 - AO353_00915 0.40 +0.6
208,461 - AO353_00915 0.45 +0.3
208,461 - AO353_00915 0.45 -1.3
208,485 + AO353_00915 0.46 -0.5
208,486 - AO353_00915 0.46 +0.3
208,486 - AO353_00915 0.46 +0.7
208,486 - AO353_00915 0.46 -0.7
208,486 - AO353_00915 0.46 -0.2
208,486 - AO353_00915 0.46 +0.1
208,655 + AO353_00915 0.57 -0.0
208,655 + AO353_00915 0.57 -0.5
208,677 + AO353_00915 0.59 +0.6
208,687 - AO353_00915 0.59 -1.2

Or see this region's nucleotide sequence