Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01810 and ABIE51_RS01815 are separated by 9 nucleotides ABIE51_RS01815 and ABIE51_RS01820 are separated by 80 nucleotides
ABIE51_RS01810: ABIE51_RS01810 - DUF58 domain-containing protein, at 402,597 to 403,929
_RS01810
ABIE51_RS01815: ABIE51_RS01815 - shikimate dehydrogenase, at 403,939 to 404,781
_RS01815
ABIE51_RS01820: ABIE51_RS01820 - PD40 domain-containing protein, at 404,862 to 405,791
_RS01820
Position (kb) 403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 402.975 kb on + strand, within ABIE51_RS01810 at 403.297 kb on + strand, within ABIE51_RS01810 at 403.417 kb on + strand, within ABIE51_RS01810 at 403.417 kb on + strand, within ABIE51_RS01810 at 403.417 kb on + strand, within ABIE51_RS01810 at 403.418 kb on - strand, within ABIE51_RS01810 at 403.418 kb on - strand, within ABIE51_RS01810 at 403.418 kb on - strand, within ABIE51_RS01810 at 403.418 kb on - strand, within ABIE51_RS01810 at 403.531 kb on + strand, within ABIE51_RS01810 at 403.531 kb on + strand, within ABIE51_RS01810 at 403.532 kb on - strand, within ABIE51_RS01810 at 403.532 kb on - strand, within ABIE51_RS01810 at 403.532 kb on - strand, within ABIE51_RS01810 at 403.532 kb on - strand, within ABIE51_RS01810 at 403.795 kb on + strand, within ABIE51_RS01810 at 403.874 kb on + strand at 403.874 kb on + strand at 403.875 kb on - strand at 403.875 kb on - strand at 403.875 kb on - strand at 403.875 kb on - strand at 403.897 kb on + strand at 403.897 kb on + strand at 403.897 kb on + strand at 403.897 kb on + strand at 403.898 kb on - strand at 403.898 kb on - strand at 403.985 kb on + strand at 404.129 kb on + strand, within ABIE51_RS01815 at 404.130 kb on - strand, within ABIE51_RS01815 at 404.130 kb on - strand, within ABIE51_RS01815 at 404.339 kb on + strand, within ABIE51_RS01815 at 404.339 kb on + strand, within ABIE51_RS01815 at 404.339 kb on + strand, within ABIE51_RS01815 at 404.340 kb on - strand, within ABIE51_RS01815 at 404.829 kb on + strand at 404.829 kb on + strand at 404.829 kb on + strand at 404.829 kb on + strand at 404.830 kb on - strand at 404.830 kb on - strand at 404.830 kb on - strand at 404.830 kb on - strand at 404.830 kb on - strand at 404.892 kb on + strand at 404.893 kb on - strand at 404.893 kb on - strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.908 kb on + strand at 404.909 kb on - strand at 404.909 kb on - strand at 404.909 kb on - strand at 404.909 kb on - strand at 404.909 kb on - strand at 405.050 kb on + strand, within ABIE51_RS01820 at 405.050 kb on + strand, within ABIE51_RS01820 at 405.050 kb on + strand, within ABIE51_RS01820 at 405.050 kb on + strand, within ABIE51_RS01820 at 405.050 kb on + strand, within ABIE51_RS01820 at 405.051 kb on - strand, within ABIE51_RS01820 at 405.051 kb on - strand, within ABIE51_RS01820 at 405.051 kb on - strand, within ABIE51_RS01820 at 405.051 kb on - strand, within ABIE51_RS01820 at 405.051 kb on - strand, within ABIE51_RS01820 at 405.051 kb on - strand, within ABIE51_RS01820 at 405.051 kb on - strand, within ABIE51_RS01820 at 405.210 kb on + strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.255 kb on + strand, within ABIE51_RS01820 at 405.531 kb on + strand, within ABIE51_RS01820 at 405.532 kb on - strand, within ABIE51_RS01820 at 405.532 kb on - strand, within ABIE51_RS01820 at 405.600 kb on + strand, within ABIE51_RS01820 at 405.742 kb on - strand at 405.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 402,975 + ABIE51_RS01810 0.28 -0.3 403,297 + ABIE51_RS01810 0.53 -0.1 403,417 + ABIE51_RS01810 0.62 -0.4 403,417 + ABIE51_RS01810 0.62 +0.4 403,417 + ABIE51_RS01810 0.62 -0.1 403,418 - ABIE51_RS01810 0.62 +0.5 403,418 - ABIE51_RS01810 0.62 +0.2 403,418 - ABIE51_RS01810 0.62 +0.9 403,418 - ABIE51_RS01810 0.62 -0.1 403,531 + ABIE51_RS01810 0.70 -2.2 403,531 + ABIE51_RS01810 0.70 +0.0 403,532 - ABIE51_RS01810 0.70 -0.1 403,532 - ABIE51_RS01810 0.70 +0.2 403,532 - ABIE51_RS01810 0.70 -0.7 403,532 - ABIE51_RS01810 0.70 +0.6 403,795 + ABIE51_RS01810 0.90 -1.3 403,874 + +1.3 403,874 + -1.8 403,875 - +0.3 403,875 - +0.3 403,875 - +0.6 403,875 - +0.0 403,897 + +0.1 403,897 + +2.2 403,897 + +1.1 403,897 + +0.4 403,898 - -0.2 403,898 - -0.2 403,985 + -2.9 404,129 + ABIE51_RS01815 0.23 +0.7 404,130 - ABIE51_RS01815 0.23 +0.5 404,130 - ABIE51_RS01815 0.23 -1.7 404,339 + ABIE51_RS01815 0.47 -1.0 404,339 + ABIE51_RS01815 0.47 -1.5 404,339 + ABIE51_RS01815 0.47 -1.7 404,340 - ABIE51_RS01815 0.48 -1.2 404,829 + -1.2 404,829 + -0.3 404,829 + +1.2 404,829 + -0.5 404,830 - -1.4 404,830 - -0.6 404,830 - -0.2 404,830 - +0.6 404,830 - +1.5 404,892 + +1.0 404,893 - -0.2 404,893 - -2.1 404,908 + +1.2 404,908 + -0.2 404,908 + -0.8 404,908 + +0.4 404,908 + +0.1 404,908 + -0.9 404,908 + +0.3 404,908 + +0.3 404,908 + -0.3 404,908 + +0.1 404,908 + -0.4 404,909 - -0.2 404,909 - +0.3 404,909 - -3.0 404,909 - +0.9 404,909 - +0.1 405,050 + ABIE51_RS01820 0.20 +0.2 405,050 + ABIE51_RS01820 0.20 +1.2 405,050 + ABIE51_RS01820 0.20 +0.1 405,050 + ABIE51_RS01820 0.20 -0.5 405,050 + ABIE51_RS01820 0.20 +0.0 405,051 - ABIE51_RS01820 0.20 -0.2 405,051 - ABIE51_RS01820 0.20 -0.3 405,051 - ABIE51_RS01820 0.20 +1.3 405,051 - ABIE51_RS01820 0.20 +1.2 405,051 - ABIE51_RS01820 0.20 +0.2 405,051 - ABIE51_RS01820 0.20 +0.4 405,051 - ABIE51_RS01820 0.20 +0.6 405,210 + ABIE51_RS01820 0.37 +0.6 405,211 - ABIE51_RS01820 0.38 -0.4 405,211 - ABIE51_RS01820 0.38 -0.5 405,211 - ABIE51_RS01820 0.38 -1.6 405,211 - ABIE51_RS01820 0.38 +0.6 405,255 + ABIE51_RS01820 0.42 -0.3 405,531 + ABIE51_RS01820 0.72 -1.5 405,532 - ABIE51_RS01820 0.72 -0.4 405,532 - ABIE51_RS01820 0.72 -1.3 405,600 + ABIE51_RS01820 0.79 -0.3 405,742 - +0.0 405,742 - +0.2
Or see this region's nucleotide sequence