Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS26170

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS19940 and RS_RS26170 are separated by 147 nucleotidesRS_RS26170 and RS_RS26175 overlap by 28 nucleotidesRS_RS26175 and RS_RS19945 are separated by 193 nucleotidesRS_RS19945 and RS_RS19950 are separated by 352 nucleotides RS_RS19940: RS_RS19940 - AraC family transcriptional regulator, at 724,530 to 725,549 _RS19940 RS_RS26170: RS_RS26170 - hypothetical protein, at 725,697 to 725,918 _RS26170 RS_RS26175: RS_RS26175 - hypothetical protein, at 725,891 to 726,081 _RS26175 RS_RS19945: RS_RS19945 - hypothetical protein, at 726,275 to 726,538 _RS19945 RS_RS19950: RS_RS19950 - hypothetical protein, at 726,891 to 727,301 _RS19950 Position (kb) 725 726Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 724.744 kb on + strand, within RS_RS19940at 724.745 kb on - strand, within RS_RS19940at 724.745 kb on - strand, within RS_RS19940at 724.760 kb on + strand, within RS_RS19940at 724.809 kb on + strand, within RS_RS19940at 724.810 kb on - strand, within RS_RS19940at 724.874 kb on + strand, within RS_RS19940at 724.915 kb on + strand, within RS_RS19940at 724.917 kb on + strand, within RS_RS19940at 724.917 kb on + strand, within RS_RS19940at 724.917 kb on + strand, within RS_RS19940at 724.918 kb on - strand, within RS_RS19940at 724.918 kb on - strand, within RS_RS19940at 724.918 kb on - strand, within RS_RS19940at 724.918 kb on - strand, within RS_RS19940at 724.918 kb on - strand, within RS_RS19940at 725.029 kb on + strand, within RS_RS19940at 725.029 kb on + strand, within RS_RS19940at 725.029 kb on + strand, within RS_RS19940at 725.029 kb on + strand, within RS_RS19940at 725.029 kb on + strand, within RS_RS19940at 725.029 kb on + strand, within RS_RS19940at 725.029 kb on + strand, within RS_RS19940at 725.030 kb on - strand, within RS_RS19940at 725.030 kb on - strand, within RS_RS19940at 725.030 kb on - strand, within RS_RS19940at 725.030 kb on - strand, within RS_RS19940at 725.030 kb on - strand, within RS_RS19940at 725.064 kb on + strand, within RS_RS19940at 725.216 kb on + strand, within RS_RS19940at 725.217 kb on - strand, within RS_RS19940at 725.217 kb on - strand, within RS_RS19940at 725.217 kb on - strand, within RS_RS19940at 725.318 kb on + strand, within RS_RS19940at 725.318 kb on + strand, within RS_RS19940at 725.318 kb on + strand, within RS_RS19940at 725.319 kb on - strand, within RS_RS19940at 725.323 kb on + strand, within RS_RS19940at 725.324 kb on - strand, within RS_RS19940at 725.324 kb on - strand, within RS_RS19940at 725.324 kb on - strand, within RS_RS19940at 725.324 kb on - strand, within RS_RS19940at 725.324 kb on - strand, within RS_RS19940at 725.451 kb on + strandat 725.451 kb on + strandat 725.460 kb on - strandat 725.577 kb on + strandat 725.578 kb on - strandat 725.578 kb on - strandat 725.578 kb on - strandat 725.632 kb on + strandat 725.632 kb on + strandat 725.633 kb on - strandat 725.749 kb on + strand, within RS_RS26170at 725.847 kb on - strand, within RS_RS26170at 725.896 kb on + strandat 725.896 kb on + strandat 725.896 kb on + strandat 725.897 kb on - strandat 725.897 kb on - strandat 725.897 kb on - strandat 725.897 kb on - strandat 725.904 kb on + strandat 725.904 kb on + strandat 725.905 kb on - strandat 725.964 kb on - strand, within RS_RS26175at 726.043 kb on + strand, within RS_RS26175at 726.044 kb on - strand, within RS_RS26175at 726.057 kb on + strand, within RS_RS26175at 726.057 kb on + strand, within RS_RS26175at 726.058 kb on - strand, within RS_RS26175at 726.071 kb on + strandat 726.174 kb on - strandat 726.225 kb on + strandat 726.244 kb on + strandat 726.268 kb on + strandat 726.275 kb on - strandat 726.275 kb on - strandat 726.349 kb on + strand, within RS_RS19945at 726.350 kb on - strand, within RS_RS19945at 726.389 kb on + strand, within RS_RS19945at 726.389 kb on + strand, within RS_RS19945at 726.390 kb on - strand, within RS_RS19945at 726.390 kb on - strand, within RS_RS19945at 726.390 kb on - strand, within RS_RS19945at 726.401 kb on + strand, within RS_RS19945at 726.401 kb on + strand, within RS_RS19945at 726.401 kb on + strand, within RS_RS19945at 726.439 kb on - strand, within RS_RS19945at 726.508 kb on + strand, within RS_RS19945at 726.508 kb on + strand, within RS_RS19945at 726.508 kb on + strand, within RS_RS19945at 726.508 kb on + strand, within RS_RS19945at 726.509 kb on - strand, within RS_RS19945at 726.509 kb on - strand, within RS_RS19945at 726.509 kb on - strand, within RS_RS19945at 726.509 kb on - strand, within RS_RS19945at 726.558 kb on + strandat 726.558 kb on + strandat 726.558 kb on + strandat 726.558 kb on + strandat 726.558 kb on + strandat 726.559 kb on - strandat 726.559 kb on - strandat 726.559 kb on - strandat 726.559 kb on - strandat 726.580 kb on + strandat 726.581 kb on - strandat 726.591 kb on + strandat 726.608 kb on - strandat 726.684 kb on - strandat 726.732 kb on + strandat 726.733 kb on - strandat 726.733 kb on - strandat 726.744 kb on + strandat 726.745 kb on + strandat 726.745 kb on + strandat 726.745 kb on + strandat 726.746 kb on - strandat 726.746 kb on - strandat 726.746 kb on - strandat 726.746 kb on - strandat 726.746 kb on - strandat 726.892 kb on + strandat 726.893 kb on - strandat 726.893 kb on - strandat 726.893 kb on - strandat 726.893 kb on - strandat 726.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
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724,744 + RS_RS19940 0.21 -1.2
724,745 - RS_RS19940 0.21 +0.6
724,745 - RS_RS19940 0.21 -0.3
724,760 + RS_RS19940 0.23 +0.8
724,809 + RS_RS19940 0.27 +0.1
724,810 - RS_RS19940 0.27 +1.1
724,874 + RS_RS19940 0.34 +1.2
724,915 + RS_RS19940 0.38 +1.0
724,917 + RS_RS19940 0.38 -2.1
724,917 + RS_RS19940 0.38 -2.1
724,917 + RS_RS19940 0.38 +0.5
724,918 - RS_RS19940 0.38 -1.0
724,918 - RS_RS19940 0.38 -1.4
724,918 - RS_RS19940 0.38 +0.7
724,918 - RS_RS19940 0.38 -2.1
724,918 - RS_RS19940 0.38 -0.1
725,029 + RS_RS19940 0.49 +0.2
725,029 + RS_RS19940 0.49 -0.4
725,029 + RS_RS19940 0.49 +0.4
725,029 + RS_RS19940 0.49 -0.1
725,029 + RS_RS19940 0.49 -2.4
725,029 + RS_RS19940 0.49 +0.7
725,029 + RS_RS19940 0.49 -1.3
725,030 - RS_RS19940 0.49 -0.7
725,030 - RS_RS19940 0.49 -0.1
725,030 - RS_RS19940 0.49 +0.8
725,030 - RS_RS19940 0.49 -1.0
725,030 - RS_RS19940 0.49 -2.5
725,064 + RS_RS19940 0.52 +0.8
725,216 + RS_RS19940 0.67 +1.9
725,217 - RS_RS19940 0.67 +0.7
725,217 - RS_RS19940 0.67 -2.3
725,217 - RS_RS19940 0.67 +1.1
725,318 + RS_RS19940 0.77 -0.3
725,318 + RS_RS19940 0.77 -0.2
725,318 + RS_RS19940 0.77 -0.7
725,319 - RS_RS19940 0.77 -1.1
725,323 + RS_RS19940 0.78 +0.0
725,324 - RS_RS19940 0.78 -0.9
725,324 - RS_RS19940 0.78 -3.1
725,324 - RS_RS19940 0.78 -0.3
725,324 - RS_RS19940 0.78 -3.2
725,324 - RS_RS19940 0.78 -2.8
725,451 + +0.5
725,451 + +0.2
725,460 - +1.0
725,577 + +0.5
725,578 - +0.6
725,578 - -2.2
725,578 - +1.2
725,632 + -0.7
725,632 + +1.5
725,633 - +0.0
725,749 + RS_RS26170 0.23 -4.1
725,847 - RS_RS26170 0.68 -2.2
725,896 + -0.4
725,896 + +0.4
725,896 + +0.4
725,897 - +0.6
725,897 - -1.6
725,897 - -3.2
725,897 - +0.9
725,904 + -0.6
725,904 + -1.4
725,905 - +0.7
725,964 - RS_RS26175 0.38 +0.1
726,043 + RS_RS26175 0.80 +1.0
726,044 - RS_RS26175 0.80 +0.4
726,057 + RS_RS26175 0.87 +0.9
726,057 + RS_RS26175 0.87 +1.2
726,058 - RS_RS26175 0.87 -3.6
726,071 + +0.1
726,174 - +0.9
726,225 + +0.0
726,244 + -0.3
726,268 + +0.6
726,275 - +1.5
726,275 - -1.2
726,349 + RS_RS19945 0.28 -0.5
726,350 - RS_RS19945 0.28 -0.3
726,389 + RS_RS19945 0.43 -0.3
726,389 + RS_RS19945 0.43 -2.0
726,390 - RS_RS19945 0.44 +1.3
726,390 - RS_RS19945 0.44 +1.7
726,390 - RS_RS19945 0.44 -0.6
726,401 + RS_RS19945 0.48 +1.1
726,401 + RS_RS19945 0.48 -0.2
726,401 + RS_RS19945 0.48 +0.9
726,439 - RS_RS19945 0.62 +0.2
726,508 + RS_RS19945 0.88 -1.0
726,508 + RS_RS19945 0.88 -1.7
726,508 + RS_RS19945 0.88 +0.2
726,508 + RS_RS19945 0.88 +0.3
726,509 - RS_RS19945 0.89 +0.7
726,509 - RS_RS19945 0.89 -1.1
726,509 - RS_RS19945 0.89 -1.4
726,509 - RS_RS19945 0.89 -3.0
726,558 + -1.1
726,558 + +0.3
726,558 + +0.7
726,558 + -2.0
726,558 + -3.1
726,559 - -2.1
726,559 - +0.5
726,559 - +0.4
726,559 - +1.0
726,580 + +0.0
726,581 - +0.3
726,591 + -0.6
726,608 - +1.1
726,684 - +0.9
726,732 + +0.1
726,733 - +1.5
726,733 - +0.1
726,744 + -0.4
726,745 + +0.3
726,745 + +0.9
726,745 + +0.8
726,746 - +0.1
726,746 - -0.4
726,746 - -0.6
726,746 - +0.1
726,746 - -1.7
726,892 + -0.7
726,893 - -0.7
726,893 - +0.3
726,893 - +0.8
726,893 - +1.8
726,893 - +0.1

Or see this region's nucleotide sequence