Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00515 and RS_RS25235 are separated by 267 nucleotides RS_RS25235 and RS_RS00520 are separated by 608 nucleotides
RS_RS00515: RS_RS00515 - hemolysin, at 119,081 to 121,909
_RS00515
RS_RS25235: RS_RS25235 - hypothetical protein, at 122,177 to 122,956
_RS25235
RS_RS00520: RS_RS00520 - hypothetical protein, at 123,565 to 125,064
_RS00520
Position (kb) 122
123 Strain fitness (log2 ratio) -1
0
1
2 at 121.623 kb on + strand, within RS_RS00515 at 121.624 kb on - strand, within RS_RS00515 at 121.624 kb on - strand, within RS_RS00515 at 121.749 kb on - strand at 121.896 kb on + strand at 121.897 kb on - strand at 121.995 kb on + strand at 122.127 kb on - strand at 122.135 kb on + strand at 122.135 kb on + strand at 122.260 kb on + strand, within RS_RS25235 at 122.261 kb on - strand, within RS_RS25235 at 122.332 kb on + strand, within RS_RS25235 at 122.337 kb on - strand, within RS_RS25235 at 122.492 kb on + strand, within RS_RS25235 at 122.519 kb on + strand, within RS_RS25235 at 122.675 kb on + strand, within RS_RS25235 at 122.746 kb on + strand, within RS_RS25235 at 122.747 kb on - strand, within RS_RS25235 at 122.780 kb on + strand, within RS_RS25235 at 122.855 kb on + strand, within RS_RS25235 at 122.855 kb on + strand, within RS_RS25235 at 122.856 kb on - strand, within RS_RS25235 at 123.047 kb on + strand at 123.047 kb on + strand at 123.048 kb on - strand at 123.048 kb on - strand at 123.048 kb on - strand at 123.048 kb on - strand at 123.080 kb on + strand at 123.081 kb on - strand at 123.081 kb on - strand at 123.272 kb on - strand at 123.370 kb on + strand at 123.456 kb on + strand at 123.514 kb on + strand at 123.535 kb on - strand at 123.535 kb on - strand at 123.582 kb on + strand at 123.582 kb on + strand at 123.583 kb on - strand at 123.736 kb on - strand, within RS_RS00520 at 123.799 kb on - strand, within RS_RS00520 at 123.799 kb on - strand, within RS_RS00520 at 123.843 kb on - strand, within RS_RS00520 at 123.843 kb on - strand, within RS_RS00520 at 123.843 kb on - strand, within RS_RS00520 at 123.946 kb on + strand, within RS_RS00520 at 123.946 kb on + strand, within RS_RS00520 at 123.947 kb on - strand, within RS_RS00520
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi remove 121,623 + RS_RS00515 0.90 -1.2 121,624 - RS_RS00515 0.90 -1.2 121,624 - RS_RS00515 0.90 +0.1 121,749 - +0.1 121,896 + -0.7 121,897 - +0.5 121,995 + +0.6 122,127 - +0.7 122,135 + -1.1 122,135 + -0.2 122,260 + RS_RS25235 0.11 +0.4 122,261 - RS_RS25235 0.11 -0.2 122,332 + RS_RS25235 0.20 -0.8 122,337 - RS_RS25235 0.21 +0.8 122,492 + RS_RS25235 0.40 -0.3 122,519 + RS_RS25235 0.44 +0.4 122,675 + RS_RS25235 0.64 +0.2 122,746 + RS_RS25235 0.73 +1.1 122,747 - RS_RS25235 0.73 +1.4 122,780 + RS_RS25235 0.77 +0.4 122,855 + RS_RS25235 0.87 -1.6 122,855 + RS_RS25235 0.87 +0.8 122,856 - RS_RS25235 0.87 -0.2 123,047 + +0.7 123,047 + +0.5 123,048 - +2.4 123,048 - -0.2 123,048 - -0.2 123,048 - -0.2 123,080 + -0.3 123,081 - -0.4 123,081 - +0.1 123,272 - +2.4 123,370 + +0.4 123,456 + +0.4 123,514 + +0.1 123,535 - +0.4 123,535 - +0.4 123,582 + -1.3 123,582 + -0.4 123,583 - -0.7 123,736 - RS_RS00520 0.11 -0.6 123,799 - RS_RS00520 0.16 -0.6 123,799 - RS_RS00520 0.16 -0.2 123,843 - RS_RS00520 0.19 -0.2 123,843 - RS_RS00520 0.19 -0.2 123,843 - RS_RS00520 0.19 -0.2 123,946 + RS_RS00520 0.25 -0.9 123,946 + RS_RS00520 0.25 +2.4 123,947 - RS_RS00520 0.25 -0.6
Or see this region's nucleotide sequence