Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20530 and RS_RS20535 are separated by 7 nucleotides RS_RS20535 and RS_RS20540 are separated by 53 nucleotides RS_RS20540 and RS_RS20545 are separated by 331 nucleotides
RS_RS20530: RS_RS20530 - EamA/RhaT family transporter, at 899,629 to 900,540
_RS20530
RS_RS20535: RS_RS20535 - membrane protein, at 900,548 to 901,360
_RS20535
RS_RS20540: RS_RS20540 - DUF1326 domain-containing protein, at 901,414 to 902,016
_RS20540
RS_RS20545: RS_RS20545 - GNAT family N-acetyltransferase, at 902,348 to 902,872
_RS20545
Position (kb) 901
902
903 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 900.969 kb on - strand, within RS_RS20535 at 900.969 kb on - strand, within RS_RS20535 at 901.026 kb on + strand, within RS_RS20535 at 901.027 kb on - strand, within RS_RS20535 at 901.158 kb on + strand, within RS_RS20535 at 901.158 kb on + strand, within RS_RS20535 at 901.158 kb on + strand, within RS_RS20535 at 901.158 kb on + strand, within RS_RS20535 at 901.159 kb on - strand, within RS_RS20535 at 901.251 kb on + strand, within RS_RS20535 at 901.261 kb on - strand, within RS_RS20535 at 901.268 kb on - strand, within RS_RS20535 at 901.592 kb on + strand, within RS_RS20540 at 901.593 kb on - strand, within RS_RS20540 at 901.593 kb on - strand, within RS_RS20540 at 901.613 kb on + strand, within RS_RS20540 at 901.743 kb on - strand, within RS_RS20540 at 901.793 kb on + strand, within RS_RS20540 at 901.793 kb on + strand, within RS_RS20540 at 901.794 kb on - strand, within RS_RS20540 at 901.794 kb on - strand, within RS_RS20540 at 901.794 kb on - strand, within RS_RS20540 at 901.794 kb on - strand, within RS_RS20540 at 902.009 kb on + strand at 902.009 kb on + strand at 902.010 kb on - strand at 902.010 kb on - strand at 902.010 kb on - strand at 902.127 kb on + strand at 902.128 kb on - strand at 902.171 kb on + strand at 902.172 kb on - strand at 902.172 kb on - strand at 902.172 kb on - strand at 902.214 kb on + strand at 902.214 kb on + strand at 902.214 kb on + strand at 902.215 kb on - strand at 902.232 kb on - strand at 902.397 kb on + strand at 902.698 kb on - strand, within RS_RS20545 at 902.698 kb on - strand, within RS_RS20545 at 902.799 kb on + strand, within RS_RS20545 at 902.799 kb on + strand, within RS_RS20545 at 902.800 kb on - strand, within RS_RS20545 at 902.904 kb on + strand at 902.939 kb on + strand at 902.939 kb on + strand at 902.978 kb on + strand at 902.978 kb on + strand at 902.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi remove 900,969 - RS_RS20535 0.52 -0.0 900,969 - RS_RS20535 0.52 -1.9 901,026 + RS_RS20535 0.59 -1.6 901,027 - RS_RS20535 0.59 +0.6 901,158 + RS_RS20535 0.75 -0.9 901,158 + RS_RS20535 0.75 -2.9 901,158 + RS_RS20535 0.75 -3.2 901,158 + RS_RS20535 0.75 -0.9 901,159 - RS_RS20535 0.75 -0.1 901,251 + RS_RS20535 0.86 +0.4 901,261 - RS_RS20535 0.88 +1.5 901,268 - RS_RS20535 0.89 +0.2 901,592 + RS_RS20540 0.30 -0.1 901,593 - RS_RS20540 0.30 -0.9 901,593 - RS_RS20540 0.30 -1.3 901,613 + RS_RS20540 0.33 -3.7 901,743 - RS_RS20540 0.55 -0.1 901,793 + RS_RS20540 0.63 -1.3 901,793 + RS_RS20540 0.63 -1.0 901,794 - RS_RS20540 0.63 +0.7 901,794 - RS_RS20540 0.63 -0.3 901,794 - RS_RS20540 0.63 +0.9 901,794 - RS_RS20540 0.63 -0.7 902,009 + +0.0 902,009 + +1.0 902,010 - +0.0 902,010 - -1.3 902,010 - -0.2 902,127 + -2.5 902,128 - +0.5 902,171 + +0.4 902,172 - +1.0 902,172 - +0.9 902,172 - -0.6 902,214 + -0.1 902,214 + +0.4 902,214 + +0.6 902,215 - +1.2 902,232 - -3.3 902,397 + -1.8 902,698 - RS_RS20545 0.67 +0.7 902,698 - RS_RS20545 0.67 +0.4 902,799 + RS_RS20545 0.86 +1.1 902,799 + RS_RS20545 0.86 +0.1 902,800 - RS_RS20545 0.86 -0.3 902,904 + +0.1 902,939 + -0.1 902,939 + -0.5 902,978 + +0.3 902,978 + +0.5 902,979 - +1.4
Or see this region's nucleotide sequence