Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19935 and RS_RS19940 are separated by 77 nucleotides RS_RS19940 and RS_RS26170 are separated by 147 nucleotides RS_RS26170 and RS_RS26175 overlap by 28 nucleotides RS_RS26175 and RS_RS19945 are separated by 193 nucleotides
RS_RS19935: RS_RS19935 - oxidoreductase, at 723,622 to 724,452
_RS19935
RS_RS19940: RS_RS19940 - AraC family transcriptional regulator, at 724,530 to 725,549
_RS19940
RS_RS26170: RS_RS26170 - hypothetical protein, at 725,697 to 725,918
_RS26170
RS_RS26175: RS_RS26175 - hypothetical protein, at 725,891 to 726,081
_RS26175
RS_RS19945: RS_RS19945 - hypothetical protein, at 726,275 to 726,538
_RS19945
Position (kb) 724
725
726 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 723.585 kb on + strand at 723.586 kb on - strand at 723.586 kb on - strand at 723.721 kb on + strand, within RS_RS19935 at 723.721 kb on + strand, within RS_RS19935 at 723.721 kb on + strand, within RS_RS19935 at 723.721 kb on + strand, within RS_RS19935 at 723.721 kb on + strand, within RS_RS19935 at 723.721 kb on + strand, within RS_RS19935 at 723.722 kb on - strand, within RS_RS19935 at 723.722 kb on - strand, within RS_RS19935 at 723.776 kb on + strand, within RS_RS19935 at 723.776 kb on + strand, within RS_RS19935 at 723.776 kb on + strand, within RS_RS19935 at 723.776 kb on + strand, within RS_RS19935 at 723.845 kb on + strand, within RS_RS19935 at 723.846 kb on - strand, within RS_RS19935 at 723.846 kb on - strand, within RS_RS19935 at 723.846 kb on - strand, within RS_RS19935 at 723.889 kb on + strand, within RS_RS19935 at 723.889 kb on + strand, within RS_RS19935 at 723.889 kb on + strand, within RS_RS19935 at 723.889 kb on + strand, within RS_RS19935 at 723.889 kb on + strand, within RS_RS19935 at 723.889 kb on + strand, within RS_RS19935 at 723.889 kb on + strand, within RS_RS19935 at 723.890 kb on - strand, within RS_RS19935 at 723.890 kb on - strand, within RS_RS19935 at 723.929 kb on - strand, within RS_RS19935 at 723.929 kb on - strand, within RS_RS19935 at 724.045 kb on + strand, within RS_RS19935 at 724.046 kb on - strand, within RS_RS19935 at 724.066 kb on + strand, within RS_RS19935 at 724.067 kb on - strand, within RS_RS19935 at 724.067 kb on - strand, within RS_RS19935 at 724.067 kb on - strand, within RS_RS19935 at 724.134 kb on + strand, within RS_RS19935 at 724.135 kb on - strand, within RS_RS19935 at 724.229 kb on - strand, within RS_RS19935 at 724.273 kb on + strand, within RS_RS19935 at 724.274 kb on - strand, within RS_RS19935 at 724.274 kb on - strand, within RS_RS19935 at 724.315 kb on - strand, within RS_RS19935 at 724.315 kb on - strand, within RS_RS19935 at 724.358 kb on - strand, within RS_RS19935 at 724.372 kb on + strand at 724.373 kb on - strand at 724.482 kb on + strand at 724.482 kb on + strand at 724.482 kb on + strand at 724.483 kb on - strand at 724.483 kb on - strand at 724.483 kb on - strand at 724.557 kb on - strand at 724.557 kb on - strand at 724.557 kb on - strand at 724.557 kb on - strand at 724.581 kb on - strand at 724.581 kb on - strand at 724.684 kb on - strand, within RS_RS19940 at 724.684 kb on - strand, within RS_RS19940 at 724.684 kb on - strand, within RS_RS19940 at 724.684 kb on - strand, within RS_RS19940 at 724.684 kb on - strand, within RS_RS19940 at 724.744 kb on + strand, within RS_RS19940 at 724.745 kb on - strand, within RS_RS19940 at 724.745 kb on - strand, within RS_RS19940 at 724.760 kb on + strand, within RS_RS19940 at 724.809 kb on + strand, within RS_RS19940 at 724.810 kb on - strand, within RS_RS19940 at 724.874 kb on + strand, within RS_RS19940 at 724.915 kb on + strand, within RS_RS19940 at 724.917 kb on + strand, within RS_RS19940 at 724.917 kb on + strand, within RS_RS19940 at 724.917 kb on + strand, within RS_RS19940 at 724.918 kb on - strand, within RS_RS19940 at 724.918 kb on - strand, within RS_RS19940 at 724.918 kb on - strand, within RS_RS19940 at 724.918 kb on - strand, within RS_RS19940 at 724.918 kb on - strand, within RS_RS19940 at 725.029 kb on + strand, within RS_RS19940 at 725.029 kb on + strand, within RS_RS19940 at 725.029 kb on + strand, within RS_RS19940 at 725.029 kb on + strand, within RS_RS19940 at 725.029 kb on + strand, within RS_RS19940 at 725.029 kb on + strand, within RS_RS19940 at 725.029 kb on + strand, within RS_RS19940 at 725.030 kb on - strand, within RS_RS19940 at 725.030 kb on - strand, within RS_RS19940 at 725.030 kb on - strand, within RS_RS19940 at 725.030 kb on - strand, within RS_RS19940 at 725.030 kb on - strand, within RS_RS19940 at 725.064 kb on + strand, within RS_RS19940 at 725.216 kb on + strand, within RS_RS19940 at 725.217 kb on - strand, within RS_RS19940 at 725.217 kb on - strand, within RS_RS19940 at 725.217 kb on - strand, within RS_RS19940 at 725.318 kb on + strand, within RS_RS19940 at 725.318 kb on + strand, within RS_RS19940 at 725.318 kb on + strand, within RS_RS19940 at 725.319 kb on - strand, within RS_RS19940 at 725.323 kb on + strand, within RS_RS19940 at 725.324 kb on - strand, within RS_RS19940 at 725.324 kb on - strand, within RS_RS19940 at 725.324 kb on - strand, within RS_RS19940 at 725.324 kb on - strand, within RS_RS19940 at 725.324 kb on - strand, within RS_RS19940 at 725.451 kb on + strand at 725.451 kb on + strand at 725.460 kb on - strand at 725.577 kb on + strand at 725.578 kb on - strand at 725.578 kb on - strand at 725.578 kb on - strand at 725.632 kb on + strand at 725.632 kb on + strand at 725.633 kb on - strand at 725.749 kb on + strand, within RS_RS26170 at 725.847 kb on - strand, within RS_RS26170 at 725.896 kb on + strand at 725.896 kb on + strand at 725.896 kb on + strand at 725.897 kb on - strand at 725.897 kb on - strand at 725.897 kb on - strand at 725.897 kb on - strand at 725.904 kb on + strand at 725.904 kb on + strand at 725.905 kb on - strand at 725.964 kb on - strand, within RS_RS26175 at 726.043 kb on + strand, within RS_RS26175 at 726.044 kb on - strand, within RS_RS26175 at 726.057 kb on + strand, within RS_RS26175 at 726.057 kb on + strand, within RS_RS26175 at 726.058 kb on - strand, within RS_RS26175 at 726.071 kb on + strand at 726.174 kb on - strand at 726.225 kb on + strand at 726.244 kb on + strand at 726.268 kb on + strand at 726.275 kb on - strand at 726.275 kb on - strand at 726.349 kb on + strand, within RS_RS19945 at 726.350 kb on - strand, within RS_RS19945 at 726.389 kb on + strand, within RS_RS19945 at 726.389 kb on + strand, within RS_RS19945 at 726.390 kb on - strand, within RS_RS19945 at 726.390 kb on - strand, within RS_RS19945 at 726.390 kb on - strand, within RS_RS19945 at 726.401 kb on + strand, within RS_RS19945 at 726.401 kb on + strand, within RS_RS19945 at 726.401 kb on + strand, within RS_RS19945 at 726.439 kb on - strand, within RS_RS19945 at 726.508 kb on + strand, within RS_RS19945 at 726.508 kb on + strand, within RS_RS19945 at 726.508 kb on + strand, within RS_RS19945 at 726.508 kb on + strand, within RS_RS19945 at 726.509 kb on - strand, within RS_RS19945 at 726.509 kb on - strand, within RS_RS19945 at 726.509 kb on - strand, within RS_RS19945 at 726.509 kb on - strand, within RS_RS19945
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi remove 723,585 + +0.0 723,586 - -0.5 723,586 - +0.0 723,721 + RS_RS19935 0.12 +1.0 723,721 + RS_RS19935 0.12 +1.3 723,721 + RS_RS19935 0.12 -0.6 723,721 + RS_RS19935 0.12 -0.2 723,721 + RS_RS19935 0.12 -0.7 723,721 + RS_RS19935 0.12 -1.0 723,722 - RS_RS19935 0.12 +0.5 723,722 - RS_RS19935 0.12 -2.8 723,776 + RS_RS19935 0.19 +0.4 723,776 + RS_RS19935 0.19 +0.1 723,776 + RS_RS19935 0.19 +0.5 723,776 + RS_RS19935 0.19 +0.0 723,845 + RS_RS19935 0.27 +1.4 723,846 - RS_RS19935 0.27 -1.8 723,846 - RS_RS19935 0.27 -0.1 723,846 - RS_RS19935 0.27 -2.7 723,889 + RS_RS19935 0.32 +0.4 723,889 + RS_RS19935 0.32 -3.0 723,889 + RS_RS19935 0.32 +0.1 723,889 + RS_RS19935 0.32 +0.2 723,889 + RS_RS19935 0.32 +0.9 723,889 + RS_RS19935 0.32 -0.5 723,889 + RS_RS19935 0.32 -1.8 723,890 - RS_RS19935 0.32 -0.2 723,890 - RS_RS19935 0.32 -1.8 723,929 - RS_RS19935 0.37 +0.1 723,929 - RS_RS19935 0.37 +0.4 724,045 + RS_RS19935 0.51 +0.5 724,046 - RS_RS19935 0.51 +0.2 724,066 + RS_RS19935 0.53 +0.9 724,067 - RS_RS19935 0.54 +1.4 724,067 - RS_RS19935 0.54 +0.8 724,067 - RS_RS19935 0.54 -0.9 724,134 + RS_RS19935 0.62 +0.1 724,135 - RS_RS19935 0.62 -1.8 724,229 - RS_RS19935 0.73 +0.6 724,273 + RS_RS19935 0.78 -1.0 724,274 - RS_RS19935 0.78 -1.0 724,274 - RS_RS19935 0.78 -2.9 724,315 - RS_RS19935 0.83 -0.2 724,315 - RS_RS19935 0.83 -1.7 724,358 - RS_RS19935 0.89 -0.2 724,372 + +0.2 724,373 - -0.9 724,482 + -1.4 724,482 + +1.0 724,482 + -0.3 724,483 - -1.2 724,483 - -0.0 724,483 - -0.3 724,557 - +1.0 724,557 - +0.4 724,557 - +0.4 724,557 - +0.3 724,581 - +0.8 724,581 - +4.2 724,684 - RS_RS19940 0.15 -2.5 724,684 - RS_RS19940 0.15 +1.4 724,684 - RS_RS19940 0.15 +1.4 724,684 - RS_RS19940 0.15 -0.3 724,684 - RS_RS19940 0.15 -1.1 724,744 + RS_RS19940 0.21 -1.2 724,745 - RS_RS19940 0.21 +0.6 724,745 - RS_RS19940 0.21 -0.3 724,760 + RS_RS19940 0.23 +0.8 724,809 + RS_RS19940 0.27 +0.1 724,810 - RS_RS19940 0.27 +1.1 724,874 + RS_RS19940 0.34 +1.2 724,915 + RS_RS19940 0.38 +1.0 724,917 + RS_RS19940 0.38 -2.1 724,917 + RS_RS19940 0.38 -2.1 724,917 + RS_RS19940 0.38 +0.5 724,918 - RS_RS19940 0.38 -1.0 724,918 - RS_RS19940 0.38 -1.4 724,918 - RS_RS19940 0.38 +0.7 724,918 - RS_RS19940 0.38 -2.1 724,918 - RS_RS19940 0.38 -0.1 725,029 + RS_RS19940 0.49 +0.2 725,029 + RS_RS19940 0.49 -0.4 725,029 + RS_RS19940 0.49 +0.4 725,029 + RS_RS19940 0.49 -0.1 725,029 + RS_RS19940 0.49 -2.4 725,029 + RS_RS19940 0.49 +0.7 725,029 + RS_RS19940 0.49 -1.3 725,030 - RS_RS19940 0.49 -0.7 725,030 - RS_RS19940 0.49 -0.1 725,030 - RS_RS19940 0.49 +0.8 725,030 - RS_RS19940 0.49 -1.0 725,030 - RS_RS19940 0.49 -2.5 725,064 + RS_RS19940 0.52 +0.8 725,216 + RS_RS19940 0.67 +1.9 725,217 - RS_RS19940 0.67 +0.7 725,217 - RS_RS19940 0.67 -2.3 725,217 - RS_RS19940 0.67 +1.1 725,318 + RS_RS19940 0.77 -0.3 725,318 + RS_RS19940 0.77 -0.2 725,318 + RS_RS19940 0.77 -0.7 725,319 - RS_RS19940 0.77 -1.1 725,323 + RS_RS19940 0.78 +0.0 725,324 - RS_RS19940 0.78 -0.9 725,324 - RS_RS19940 0.78 -3.1 725,324 - RS_RS19940 0.78 -0.3 725,324 - RS_RS19940 0.78 -3.2 725,324 - RS_RS19940 0.78 -2.8 725,451 + +0.5 725,451 + +0.2 725,460 - +1.0 725,577 + +0.5 725,578 - +0.6 725,578 - -2.2 725,578 - +1.2 725,632 + -0.7 725,632 + +1.5 725,633 - +0.0 725,749 + RS_RS26170 0.23 -4.1 725,847 - RS_RS26170 0.68 -2.2 725,896 + -0.4 725,896 + +0.4 725,896 + +0.4 725,897 - +0.6 725,897 - -1.6 725,897 - -3.2 725,897 - +0.9 725,904 + -0.6 725,904 + -1.4 725,905 - +0.7 725,964 - RS_RS26175 0.38 +0.1 726,043 + RS_RS26175 0.80 +1.0 726,044 - RS_RS26175 0.80 +0.4 726,057 + RS_RS26175 0.87 +0.9 726,057 + RS_RS26175 0.87 +1.2 726,058 - RS_RS26175 0.87 -3.6 726,071 + +0.1 726,174 - +0.9 726,225 + +0.0 726,244 + -0.3 726,268 + +0.6 726,275 - +1.5 726,275 - -1.2 726,349 + RS_RS19945 0.28 -0.5 726,350 - RS_RS19945 0.28 -0.3 726,389 + RS_RS19945 0.43 -0.3 726,389 + RS_RS19945 0.43 -2.0 726,390 - RS_RS19945 0.44 +1.3 726,390 - RS_RS19945 0.44 +1.7 726,390 - RS_RS19945 0.44 -0.6 726,401 + RS_RS19945 0.48 +1.1 726,401 + RS_RS19945 0.48 -0.2 726,401 + RS_RS19945 0.48 +0.9 726,439 - RS_RS19945 0.62 +0.2 726,508 + RS_RS19945 0.88 -1.0 726,508 + RS_RS19945 0.88 -1.7 726,508 + RS_RS19945 0.88 +0.2 726,508 + RS_RS19945 0.88 +0.3 726,509 - RS_RS19945 0.89 +0.7 726,509 - RS_RS19945 0.89 -1.1 726,509 - RS_RS19945 0.89 -1.4 726,509 - RS_RS19945 0.89 -3.0
Or see this region's nucleotide sequence