Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18810

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18800 and RS_RS18805 are separated by 29 nucleotidesRS_RS18805 and RS_RS18810 are separated by 39 nucleotidesRS_RS18810 and RS_RS18815 are separated by 13 nucleotidesRS_RS18815 and RS_RS18820 are separated by 40 nucleotides RS_RS18800: RS_RS18800 - flagellar basal body rod protein FlgC, at 448,838 to 449,245 _RS18800 RS_RS18805: RS_RS18805 - flagellar basal body rod modification protein FlgD, at 449,275 to 449,940 _RS18805 RS_RS18810: RS_RS18810 - flagellar hook protein FlgE, at 449,980 to 451,185 _RS18810 RS_RS18815: RS_RS18815 - flagellar basal-body rod protein FlgF, at 451,199 to 451,936 _RS18815 RS_RS18820: RS_RS18820 - flagellar basal-body rod protein FlgG, at 451,977 to 452,759 _RS18820 Position (kb) 449 450 451 452Strain fitness (log2 ratio) -2 -1 0 1 2at 449.108 kb on + strand, within RS_RS18800at 449.108 kb on + strand, within RS_RS18800at 449.109 kb on - strand, within RS_RS18800at 449.200 kb on + strand, within RS_RS18800at 449.244 kb on - strandat 449.244 kb on - strandat 449.728 kb on + strand, within RS_RS18805at 449.729 kb on - strand, within RS_RS18805at 449.729 kb on - strand, within RS_RS18805at 449.729 kb on - strand, within RS_RS18805at 449.760 kb on + strand, within RS_RS18805at 449.761 kb on - strand, within RS_RS18805at 449.761 kb on - strand, within RS_RS18805at 449.779 kb on + strand, within RS_RS18805at 449.779 kb on + strand, within RS_RS18805at 449.780 kb on - strand, within RS_RS18805at 449.874 kb on + strandat 450.073 kb on + strandat 450.073 kb on + strandat 450.074 kb on - strandat 450.106 kb on + strand, within RS_RS18810at 450.106 kb on + strand, within RS_RS18810at 450.107 kb on - strand, within RS_RS18810at 450.283 kb on + strand, within RS_RS18810at 450.283 kb on + strand, within RS_RS18810at 450.283 kb on + strand, within RS_RS18810at 450.323 kb on - strand, within RS_RS18810at 450.323 kb on - strand, within RS_RS18810at 450.323 kb on - strand, within RS_RS18810at 450.557 kb on - strand, within RS_RS18810at 450.592 kb on + strand, within RS_RS18810at 450.592 kb on + strand, within RS_RS18810at 450.592 kb on + strand, within RS_RS18810at 450.592 kb on + strand, within RS_RS18810at 450.593 kb on - strand, within RS_RS18810at 450.595 kb on + strand, within RS_RS18810at 450.596 kb on - strand, within RS_RS18810at 450.626 kb on - strand, within RS_RS18810at 450.782 kb on - strand, within RS_RS18810at 450.847 kb on + strand, within RS_RS18810at 451.117 kb on + strandat 451.117 kb on + strandat 451.187 kb on + strandat 451.187 kb on + strandat 451.188 kb on - strandat 451.214 kb on + strandat 451.215 kb on - strandat 451.215 kb on - strandat 451.493 kb on + strand, within RS_RS18815at 451.493 kb on + strand, within RS_RS18815

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
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449,108 + RS_RS18800 0.66 +0.1
449,108 + RS_RS18800 0.66 -0.3
449,109 - RS_RS18800 0.66 +0.6
449,200 + RS_RS18800 0.89 +1.0
449,244 - +0.6
449,244 - +0.1
449,728 + RS_RS18805 0.68 -0.2
449,729 - RS_RS18805 0.68 -2.6
449,729 - RS_RS18805 0.68 -1.8
449,729 - RS_RS18805 0.68 -0.8
449,760 + RS_RS18805 0.73 +0.9
449,761 - RS_RS18805 0.73 -0.3
449,761 - RS_RS18805 0.73 -0.6
449,779 + RS_RS18805 0.76 -1.0
449,779 + RS_RS18805 0.76 +0.3
449,780 - RS_RS18805 0.76 -0.5
449,874 + -1.5
450,073 + -1.2
450,073 + -0.5
450,074 - +1.5
450,106 + RS_RS18810 0.10 +0.2
450,106 + RS_RS18810 0.10 -0.5
450,107 - RS_RS18810 0.11 +1.0
450,283 + RS_RS18810 0.25 +0.8
450,283 + RS_RS18810 0.25 +0.5
450,283 + RS_RS18810 0.25 +0.9
450,323 - RS_RS18810 0.28 -0.5
450,323 - RS_RS18810 0.28 +1.0
450,323 - RS_RS18810 0.28 +0.5
450,557 - RS_RS18810 0.48 +0.7
450,592 + RS_RS18810 0.51 +1.5
450,592 + RS_RS18810 0.51 +0.2
450,592 + RS_RS18810 0.51 -1.0
450,592 + RS_RS18810 0.51 -1.6
450,593 - RS_RS18810 0.51 -1.0
450,595 + RS_RS18810 0.51 -0.7
450,596 - RS_RS18810 0.51 +0.2
450,626 - RS_RS18810 0.54 +2.6
450,782 - RS_RS18810 0.67 -0.4
450,847 + RS_RS18810 0.72 +1.9
451,117 + -1.8
451,117 + -0.0
451,187 + +0.1
451,187 + +1.7
451,188 - -0.1
451,214 + -0.9
451,215 - +0.1
451,215 - +0.1
451,493 + RS_RS18815 0.40 +0.5
451,493 + RS_RS18815 0.40 +1.5

Or see this region's nucleotide sequence