Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18760 and RS_RS18765 are separated by 94 nucleotides RS_RS18765 and RS_RS18770 are separated by 262 nucleotides
RS_RS18760: RS_RS18760 - DNA-binding protein, at 442,190 to 442,480
_RS18760
RS_RS18765: RS_RS18765 - GntR family transcriptional regulator, at 442,575 to 443,303
_RS18765
RS_RS18770: RS_RS18770 - porin, at 443,566 to 444,621
_RS18770
Position (kb) 442
443
444 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 441.645 kb on - strand at 441.702 kb on + strand at 441.702 kb on + strand at 441.866 kb on - strand at 441.917 kb on + strand at 441.917 kb on + strand at 441.942 kb on + strand at 442.014 kb on - strand at 442.092 kb on - strand at 442.199 kb on + strand at 442.199 kb on + strand at 442.200 kb on - strand at 442.200 kb on - strand at 442.388 kb on + strand, within RS_RS18760 at 442.388 kb on + strand, within RS_RS18760 at 442.388 kb on + strand, within RS_RS18760 at 442.389 kb on - strand, within RS_RS18760 at 442.564 kb on - strand at 442.564 kb on - strand at 442.564 kb on - strand at 442.565 kb on + strand at 442.565 kb on + strand at 442.565 kb on + strand at 442.596 kb on + strand at 442.596 kb on + strand at 442.596 kb on + strand at 442.596 kb on + strand at 442.597 kb on - strand at 442.721 kb on + strand, within RS_RS18765 at 442.722 kb on - strand, within RS_RS18765 at 442.819 kb on - strand, within RS_RS18765 at 442.869 kb on + strand, within RS_RS18765 at 443.205 kb on + strand, within RS_RS18765 at 443.205 kb on + strand, within RS_RS18765 at 443.238 kb on + strand at 443.238 kb on + strand at 443.239 kb on - strand at 443.239 kb on - strand at 443.262 kb on + strand at 443.263 kb on - strand at 443.264 kb on + strand at 443.264 kb on + strand at 443.265 kb on - strand at 443.287 kb on + strand at 443.287 kb on + strand at 443.653 kb on + strand at 443.654 kb on - strand at 443.743 kb on + strand, within RS_RS18770 at 443.744 kb on - strand, within RS_RS18770 at 443.744 kb on - strand, within RS_RS18770 at 443.875 kb on + strand, within RS_RS18770 at 443.876 kb on - strand, within RS_RS18770 at 443.876 kb on - strand, within RS_RS18770 at 443.935 kb on + strand, within RS_RS18770 at 443.935 kb on + strand, within RS_RS18770 at 443.935 kb on + strand, within RS_RS18770 at 443.935 kb on + strand, within RS_RS18770 at 443.936 kb on - strand, within RS_RS18770 at 443.936 kb on - strand, within RS_RS18770 at 443.936 kb on - strand, within RS_RS18770 at 443.936 kb on - strand, within RS_RS18770 at 443.936 kb on - strand, within RS_RS18770 at 443.977 kb on + strand, within RS_RS18770 at 443.977 kb on + strand, within RS_RS18770 at 443.977 kb on + strand, within RS_RS18770 at 443.978 kb on - strand, within RS_RS18770 at 443.978 kb on - strand, within RS_RS18770 at 443.978 kb on - strand, within RS_RS18770 at 444.007 kb on + strand, within RS_RS18770 at 444.008 kb on - strand, within RS_RS18770 at 444.008 kb on - strand, within RS_RS18770 at 444.008 kb on - strand, within RS_RS18770 at 444.085 kb on + strand, within RS_RS18770 at 444.085 kb on + strand, within RS_RS18770 at 444.086 kb on - strand, within RS_RS18770 at 444.086 kb on - strand, within RS_RS18770 at 444.127 kb on + strand, within RS_RS18770 at 444.128 kb on - strand, within RS_RS18770 at 444.128 kb on - strand, within RS_RS18770 at 444.128 kb on - strand, within RS_RS18770 at 444.188 kb on - strand, within RS_RS18770 at 444.188 kb on - strand, within RS_RS18770 at 444.188 kb on - strand, within RS_RS18770
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi remove 441,645 - -0.2 441,702 + +0.4 441,702 + +0.0 441,866 - -2.6 441,917 + +0.8 441,917 + +1.8 441,942 + -0.9 442,014 - -0.4 442,092 - -0.3 442,199 + +0.6 442,199 + +0.5 442,200 - -0.5 442,200 - +0.2 442,388 + RS_RS18760 0.68 -0.9 442,388 + RS_RS18760 0.68 -0.2 442,388 + RS_RS18760 0.68 -1.1 442,389 - RS_RS18760 0.68 +0.3 442,564 - -0.7 442,564 - +0.1 442,564 - -0.9 442,565 + +0.4 442,565 + +0.1 442,565 + +0.3 442,596 + -0.7 442,596 + -0.8 442,596 + -1.2 442,596 + -2.6 442,597 - -0.6 442,721 + RS_RS18765 0.20 -0.5 442,722 - RS_RS18765 0.20 +0.1 442,819 - RS_RS18765 0.33 -0.1 442,869 + RS_RS18765 0.40 +0.2 443,205 + RS_RS18765 0.86 -0.1 443,205 + RS_RS18765 0.86 -2.4 443,238 + +1.4 443,238 + -1.1 443,239 - +0.3 443,239 - +0.5 443,262 + -1.3 443,263 - -0.4 443,264 + +1.1 443,264 + +0.3 443,265 - +0.1 443,287 + -0.5 443,287 + -0.5 443,653 + -0.5 443,654 - +0.7 443,743 + RS_RS18770 0.17 +0.7 443,744 - RS_RS18770 0.17 +0.5 443,744 - RS_RS18770 0.17 -0.4 443,875 + RS_RS18770 0.29 +1.1 443,876 - RS_RS18770 0.29 -0.8 443,876 - RS_RS18770 0.29 -3.9 443,935 + RS_RS18770 0.35 +1.3 443,935 + RS_RS18770 0.35 -0.5 443,935 + RS_RS18770 0.35 +0.6 443,935 + RS_RS18770 0.35 +0.0 443,936 - RS_RS18770 0.35 -0.2 443,936 - RS_RS18770 0.35 +0.8 443,936 - RS_RS18770 0.35 +0.9 443,936 - RS_RS18770 0.35 +0.3 443,936 - RS_RS18770 0.35 -1.5 443,977 + RS_RS18770 0.39 -0.6 443,977 + RS_RS18770 0.39 -1.0 443,977 + RS_RS18770 0.39 +0.7 443,978 - RS_RS18770 0.39 +0.1 443,978 - RS_RS18770 0.39 +0.8 443,978 - RS_RS18770 0.39 +0.3 444,007 + RS_RS18770 0.42 +1.0 444,008 - RS_RS18770 0.42 -1.1 444,008 - RS_RS18770 0.42 -1.9 444,008 - RS_RS18770 0.42 -0.3 444,085 + RS_RS18770 0.49 +1.1 444,085 + RS_RS18770 0.49 +0.5 444,086 - RS_RS18770 0.49 +0.5 444,086 - RS_RS18770 0.49 -0.4 444,127 + RS_RS18770 0.53 +0.0 444,128 - RS_RS18770 0.53 -0.3 444,128 - RS_RS18770 0.53 -0.9 444,128 - RS_RS18770 0.53 +0.2 444,188 - RS_RS18770 0.59 -0.4 444,188 - RS_RS18770 0.59 -1.4 444,188 - RS_RS18770 0.59 +0.5
Or see this region's nucleotide sequence