Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18225 and RS_RS18230 are separated by 78 nucleotides RS_RS18230 and RS_RS18235 are separated by 152 nucleotides RS_RS18235 and RS_RS18240 are separated by 98 nucleotides
RS_RS18225: RS_RS18225 - oxidoreductase, at 278,338 to 279,291
_RS18225
RS_RS18230: RS_RS18230 - MarR family transcriptional regulator, at 279,370 to 279,834
_RS18230
RS_RS18235: RS_RS18235 - crotonase, at 279,987 to 280,820
_RS18235
RS_RS18240: RS_RS18240 - salicylaldehyde dehydrogenase, at 280,919 to 282,373
_RS18240
Position (kb) 279
280
281 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 279.208 kb on + strand at 279.208 kb on + strand at 279.208 kb on + strand at 279.289 kb on + strand at 279.289 kb on + strand at 279.289 kb on + strand at 279.289 kb on + strand at 279.289 kb on + strand at 279.290 kb on - strand at 279.290 kb on - strand at 279.290 kb on - strand at 279.290 kb on - strand at 279.371 kb on + strand at 279.371 kb on + strand at 279.372 kb on - strand at 279.695 kb on + strand, within RS_RS18230 at 279.777 kb on - strand, within RS_RS18230 at 279.869 kb on + strand at 279.870 kb on - strand at 279.884 kb on + strand at 279.996 kb on + strand at 279.997 kb on - strand at 279.997 kb on - strand at 280.210 kb on - strand, within RS_RS18235 at 280.299 kb on + strand, within RS_RS18235 at 280.299 kb on + strand, within RS_RS18235 at 280.299 kb on + strand, within RS_RS18235 at 280.300 kb on - strand, within RS_RS18235 at 280.300 kb on - strand, within RS_RS18235 at 280.494 kb on + strand, within RS_RS18235 at 280.494 kb on + strand, within RS_RS18235 at 280.494 kb on + strand, within RS_RS18235 at 280.494 kb on + strand, within RS_RS18235 at 280.494 kb on + strand, within RS_RS18235 at 280.495 kb on - strand, within RS_RS18235 at 280.638 kb on + strand, within RS_RS18235 at 280.639 kb on - strand, within RS_RS18235 at 280.639 kb on - strand, within RS_RS18235 at 280.695 kb on + strand, within RS_RS18235 at 280.695 kb on + strand, within RS_RS18235 at 280.696 kb on - strand, within RS_RS18235 at 280.696 kb on - strand, within RS_RS18235 at 280.701 kb on + strand, within RS_RS18235 at 280.807 kb on - strand at 280.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi remove 279,208 + -0.9 279,208 + +0.2 279,208 + -0.5 279,289 + +0.5 279,289 + -0.6 279,289 + +0.1 279,289 + -3.3 279,289 + -0.2 279,290 - -0.4 279,290 - -0.8 279,290 - -0.5 279,290 - +0.5 279,371 + +0.8 279,371 + -0.1 279,372 - -0.6 279,695 + RS_RS18230 0.70 +0.1 279,777 - RS_RS18230 0.88 -0.3 279,869 + +0.6 279,870 - -1.0 279,884 + +0.1 279,996 + -0.4 279,997 - -1.3 279,997 - +0.9 280,210 - RS_RS18235 0.27 -2.7 280,299 + RS_RS18235 0.37 +0.7 280,299 + RS_RS18235 0.37 -0.1 280,299 + RS_RS18235 0.37 +0.1 280,300 - RS_RS18235 0.38 -2.7 280,300 - RS_RS18235 0.38 -1.1 280,494 + RS_RS18235 0.61 -1.3 280,494 + RS_RS18235 0.61 -2.6 280,494 + RS_RS18235 0.61 -0.3 280,494 + RS_RS18235 0.61 +1.1 280,494 + RS_RS18235 0.61 +0.1 280,495 - RS_RS18235 0.61 -0.5 280,638 + RS_RS18235 0.78 +1.1 280,639 - RS_RS18235 0.78 -0.3 280,639 - RS_RS18235 0.78 +0.2 280,695 + RS_RS18235 0.85 +0.1 280,695 + RS_RS18235 0.85 -0.5 280,696 - RS_RS18235 0.85 +0.7 280,696 - RS_RS18235 0.85 -0.8 280,701 + RS_RS18235 0.86 +0.6 280,807 - -2.0 280,807 - +0.2
Or see this region's nucleotide sequence