Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18145

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18140 and RS_RS18145 are separated by 76 nucleotidesRS_RS18145 and RS_RS18150 overlap by 4 nucleotides RS_RS18140: RS_RS18140 - IS5/IS1182 family transposase, at 254,650 to 255,636 _RS18140 RS_RS18145: RS_RS18145 - hypothetical protein, at 255,713 to 256,201 _RS18145 RS_RS18150: RS_RS18150 - hypothetical protein, at 256,198 to 257,904 _RS18150 Position (kb) 255 256 257Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 255.709 kb on + strandat 255.733 kb on + strandat 255.734 kb on - strandat 255.734 kb on - strandat 255.734 kb on - strandat 255.735 kb on + strandat 255.735 kb on + strandat 255.735 kb on + strandat 255.736 kb on - strandat 255.751 kb on - strandat 255.801 kb on - strand, within RS_RS18145at 255.801 kb on - strand, within RS_RS18145at 255.823 kb on + strand, within RS_RS18145at 255.823 kb on + strand, within RS_RS18145at 255.825 kb on + strand, within RS_RS18145at 255.855 kb on + strand, within RS_RS18145at 255.856 kb on - strand, within RS_RS18145at 255.897 kb on + strand, within RS_RS18145at 255.898 kb on - strand, within RS_RS18145at 255.953 kb on + strand, within RS_RS18145at 256.066 kb on + strand, within RS_RS18145at 256.067 kb on - strand, within RS_RS18145at 256.067 kb on - strand, within RS_RS18145at 256.079 kb on - strand, within RS_RS18145at 256.079 kb on - strand, within RS_RS18145at 256.109 kb on + strand, within RS_RS18145at 256.110 kb on - strand, within RS_RS18145at 256.110 kb on - strand, within RS_RS18145at 256.110 kb on - strand, within RS_RS18145at 256.117 kb on - strand, within RS_RS18145at 256.234 kb on + strandat 256.234 kb on + strandat 256.234 kb on + strandat 256.234 kb on + strandat 256.234 kb on + strandat 256.235 kb on - strandat 256.235 kb on - strandat 256.235 kb on - strandat 256.235 kb on - strandat 256.244 kb on + strandat 256.244 kb on + strandat 256.244 kb on + strandat 256.277 kb on + strandat 256.277 kb on + strandat 256.277 kb on + strandat 256.355 kb on + strandat 256.556 kb on + strand, within RS_RS18150at 256.565 kb on + strand, within RS_RS18150at 256.565 kb on + strand, within RS_RS18150at 256.565 kb on + strand, within RS_RS18150at 256.566 kb on - strand, within RS_RS18150at 256.566 kb on - strand, within RS_RS18150at 256.580 kb on + strand, within RS_RS18150at 256.581 kb on - strand, within RS_RS18150at 256.581 kb on - strand, within RS_RS18150at 256.581 kb on - strand, within RS_RS18150at 256.698 kb on - strand, within RS_RS18150at 256.718 kb on + strand, within RS_RS18150at 256.719 kb on - strand, within RS_RS18150at 256.719 kb on - strand, within RS_RS18150at 256.803 kb on - strand, within RS_RS18150at 256.803 kb on - strand, within RS_RS18150at 256.955 kb on + strand, within RS_RS18150at 257.080 kb on + strand, within RS_RS18150at 257.080 kb on + strand, within RS_RS18150at 257.080 kb on + strand, within RS_RS18150at 257.081 kb on - strand, within RS_RS18150at 257.081 kb on - strand, within RS_RS18150at 257.081 kb on - strand, within RS_RS18150at 257.081 kb on - strand, within RS_RS18150at 257.153 kb on + strand, within RS_RS18150at 257.153 kb on + strand, within RS_RS18150at 257.153 kb on + strand, within RS_RS18150at 257.187 kb on + strand, within RS_RS18150at 257.187 kb on + strand, within RS_RS18150at 257.187 kb on + strand, within RS_RS18150at 257.187 kb on + strand, within RS_RS18150at 257.188 kb on - strand, within RS_RS18150at 257.188 kb on - strand, within RS_RS18150at 257.190 kb on - strand, within RS_RS18150

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
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255,709 + -0.2
255,733 + -0.0
255,734 - -2.0
255,734 - -0.5
255,734 - +1.6
255,735 + +0.5
255,735 + -0.7
255,735 + -0.5
255,736 - +0.7
255,751 - +0.3
255,801 - RS_RS18145 0.18 -3.1
255,801 - RS_RS18145 0.18 -0.6
255,823 + RS_RS18145 0.22 -0.6
255,823 + RS_RS18145 0.22 -0.0
255,825 + RS_RS18145 0.23 -1.2
255,855 + RS_RS18145 0.29 +0.7
255,856 - RS_RS18145 0.29 +0.3
255,897 + RS_RS18145 0.38 -4.9
255,898 - RS_RS18145 0.38 -3.4
255,953 + RS_RS18145 0.49 -0.4
256,066 + RS_RS18145 0.72 -1.2
256,067 - RS_RS18145 0.72 -0.1
256,067 - RS_RS18145 0.72 +0.6
256,079 - RS_RS18145 0.75 +1.5
256,079 - RS_RS18145 0.75 -1.8
256,109 + RS_RS18145 0.81 +1.0
256,110 - RS_RS18145 0.81 +0.6
256,110 - RS_RS18145 0.81 -1.4
256,110 - RS_RS18145 0.81 -0.5
256,117 - RS_RS18145 0.83 +0.6
256,234 + -4.5
256,234 + +0.1
256,234 + +0.9
256,234 + +0.4
256,234 + -0.5
256,235 - +0.4
256,235 - +1.1
256,235 - +0.1
256,235 - -0.7
256,244 + -0.5
256,244 + +1.3
256,244 + -0.3
256,277 + -0.1
256,277 + +0.5
256,277 + +0.0
256,355 + +0.6
256,556 + RS_RS18150 0.21 -2.8
256,565 + RS_RS18150 0.21 -1.0
256,565 + RS_RS18150 0.21 -3.7
256,565 + RS_RS18150 0.21 -1.5
256,566 - RS_RS18150 0.22 -0.8
256,566 - RS_RS18150 0.22 -3.0
256,580 + RS_RS18150 0.22 -0.2
256,581 - RS_RS18150 0.22 +0.2
256,581 - RS_RS18150 0.22 -1.7
256,581 - RS_RS18150 0.22 +0.4
256,698 - RS_RS18150 0.29 +1.3
256,718 + RS_RS18150 0.30 -0.9
256,719 - RS_RS18150 0.31 -0.1
256,719 - RS_RS18150 0.31 -1.7
256,803 - RS_RS18150 0.35 +0.8
256,803 - RS_RS18150 0.35 -1.8
256,955 + RS_RS18150 0.44 +1.2
257,080 + RS_RS18150 0.52 -1.0
257,080 + RS_RS18150 0.52 -0.0
257,080 + RS_RS18150 0.52 +0.7
257,081 - RS_RS18150 0.52 -1.1
257,081 - RS_RS18150 0.52 +0.2
257,081 - RS_RS18150 0.52 +0.2
257,081 - RS_RS18150 0.52 +0.3
257,153 + RS_RS18150 0.56 +0.2
257,153 + RS_RS18150 0.56 -0.5
257,153 + RS_RS18150 0.56 +0.2
257,187 + RS_RS18150 0.58 -0.4
257,187 + RS_RS18150 0.58 -0.6
257,187 + RS_RS18150 0.58 -0.9
257,187 + RS_RS18150 0.58 +0.1
257,188 - RS_RS18150 0.58 -1.4
257,188 - RS_RS18150 0.58 +0.2
257,190 - RS_RS18150 0.58 -0.8

Or see this region's nucleotide sequence