Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17980 and RS_RS17985 are separated by 217 nucleotides RS_RS17985 and RS_RS17990 are separated by 27 nucleotides RS_RS17990 and RS_RS17995 are separated by 23 nucleotides
RS_RS17980: RS_RS17980 - class I SAM-dependent methyltransferase, at 215,041 to 215,865
_RS17980
RS_RS17985: RS_RS17985 - DUF2345 domain-containing protein, at 216,083 to 218,971
_RS17985
RS_RS17990: RS_RS17990 - DUF4123 domain-containing protein, at 218,999 to 219,835
_RS17990
RS_RS17995: RS_RS17995 - DUF3304 domain-containing protein, at 219,859 to 220,410
_RS17995
Position (kb) 216
217
218
219 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 215.084 kb on - strand at 215.130 kb on - strand, within RS_RS17980 at 215.130 kb on - strand, within RS_RS17980 at 215.143 kb on + strand, within RS_RS17980 at 215.143 kb on + strand, within RS_RS17980 at 215.144 kb on - strand, within RS_RS17980 at 215.144 kb on - strand, within RS_RS17980 at 215.467 kb on - strand, within RS_RS17980 at 215.533 kb on + strand, within RS_RS17980 at 215.533 kb on + strand, within RS_RS17980 at 215.533 kb on + strand, within RS_RS17980 at 215.534 kb on - strand, within RS_RS17980 at 215.602 kb on + strand, within RS_RS17980 at 215.611 kb on + strand, within RS_RS17980 at 215.612 kb on - strand, within RS_RS17980 at 215.668 kb on - strand, within RS_RS17980 at 215.668 kb on - strand, within RS_RS17980 at 215.972 kb on - strand at 215.972 kb on - strand at 215.978 kb on + strand at 215.979 kb on - strand at 216.065 kb on + strand at 216.066 kb on - strand at 216.135 kb on - strand at 218.013 kb on - strand, within RS_RS17985 at 218.148 kb on - strand, within RS_RS17985 at 218.834 kb on + strand at 218.834 kb on + strand at 218.834 kb on + strand at 218.834 kb on + strand at 218.880 kb on - strand at 219.134 kb on + strand, within RS_RS17990 at 219.135 kb on - strand, within RS_RS17990 at 219.135 kb on - strand, within RS_RS17990 at 219.198 kb on - strand, within RS_RS17990 at 219.714 kb on - strand, within RS_RS17990 at 219.714 kb on - strand, within RS_RS17990 at 219.723 kb on + strand, within RS_RS17990 at 219.723 kb on + strand, within RS_RS17990 at 219.816 kb on + strand at 219.817 kb on - strand at 219.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi remove 215,084 - +0.8 215,130 - RS_RS17980 0.11 -0.5 215,130 - RS_RS17980 0.11 -2.0 215,143 + RS_RS17980 0.12 +1.8 215,143 + RS_RS17980 0.12 -2.9 215,144 - RS_RS17980 0.12 +0.8 215,144 - RS_RS17980 0.12 +1.1 215,467 - RS_RS17980 0.52 -2.0 215,533 + RS_RS17980 0.60 +0.0 215,533 + RS_RS17980 0.60 +0.9 215,533 + RS_RS17980 0.60 +0.4 215,534 - RS_RS17980 0.60 -0.3 215,602 + RS_RS17980 0.68 -0.1 215,611 + RS_RS17980 0.69 -2.9 215,612 - RS_RS17980 0.69 +0.2 215,668 - RS_RS17980 0.76 -2.3 215,668 - RS_RS17980 0.76 +0.5 215,972 - -0.0 215,972 - -2.1 215,978 + +0.4 215,979 - +1.3 216,065 + -0.1 216,066 - -0.7 216,135 - +0.5 218,013 - RS_RS17985 0.67 +0.0 218,148 - RS_RS17985 0.71 -0.7 218,834 + +0.2 218,834 + -1.0 218,834 + +1.3 218,834 + -0.7 218,880 - +0.1 219,134 + RS_RS17990 0.16 -0.2 219,135 - RS_RS17990 0.16 +0.2 219,135 - RS_RS17990 0.16 -0.3 219,198 - RS_RS17990 0.24 -3.9 219,714 - RS_RS17990 0.85 -0.5 219,714 - RS_RS17990 0.85 -2.4 219,723 + RS_RS17990 0.86 -0.3 219,723 + RS_RS17990 0.86 +0.7 219,816 + +0.1 219,817 - -0.0 219,817 - -0.1
Or see this region's nucleotide sequence