Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS10210

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS10195 and RS_RS10200 are separated by 16 nucleotidesRS_RS10200 and RS_RS10205 are separated by 11 nucleotidesRS_RS10205 and RS_RS10210 are separated by 30 nucleotidesRS_RS10210 and RS_RS10215 are separated by 42 nucleotides RS_RS10195: RS_RS10195 - urease subunit alpha, at 2,206,070 to 2,207,788 _RS10195 RS_RS10200: RS_RS10200 - urease subunit beta, at 2,207,805 to 2,208,110 _RS10200 RS_RS10205: RS_RS10205 - urease accessory protein UreJ, at 2,208,122 to 2,208,739 _RS10205 RS_RS10210: RS_RS10210 - urease subunit gamma, at 2,208,770 to 2,209,072 _RS10210 RS_RS10215: RS_RS10215 - urease accessory protein, at 2,209,115 to 2,210,002 _RS10215 Position (kb) 2208 2209 2210Strain fitness (log2 ratio) -1 0 1at 2208.901 kb on - strand, within RS_RS10210at 2208.901 kb on - strand, within RS_RS10210at 2209.084 kb on + strandat 2209.711 kb on - strand, within RS_RS10215

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
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2,208,901 - RS_RS10210 0.43 -0.7
2,208,901 - RS_RS10210 0.43 +1.0
2,209,084 + +0.8
2,209,711 - RS_RS10215 0.67 -0.3

Or see this region's nucleotide sequence