Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03805 and RS_RS03810 are separated by 433 nucleotides RS_RS03810 and RS_RS03815 are separated by 113 nucleotides RS_RS03815 and RS_RS03820 are separated by 10 nucleotides
RS_RS03805: RS_RS03805 - NCS2 family permease, at 797,846 to 799,213
_RS03805
RS_RS03810: RS_RS03810 - acyl-CoA dehydrogenase, at 799,647 to 800,840
_RS03810
RS_RS03815: RS_RS03815 - IclR family transcriptional regulator, at 800,954 to 801,775
_RS03815
RS_RS03820: RS_RS03820 - tryptophan 2,3-dioxygenase, at 801,786 to 802,622
_RS03820
Position (kb) 799
800
801 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 799.074 kb on + strand, within RS_RS03805 at 799.074 kb on + strand, within RS_RS03805 at 799.075 kb on - strand, within RS_RS03805 at 799.075 kb on - strand, within RS_RS03805 at 799.488 kb on + strand at 799.489 kb on - strand at 799.609 kb on + strand at 799.609 kb on + strand at 799.609 kb on + strand at 799.610 kb on - strand at 799.610 kb on - strand at 799.717 kb on + strand at 799.718 kb on - strand at 799.718 kb on - strand at 800.012 kb on - strand, within RS_RS03810 at 800.012 kb on - strand, within RS_RS03810 at 800.471 kb on - strand, within RS_RS03810 at 800.593 kb on + strand, within RS_RS03810 at 800.593 kb on + strand, within RS_RS03810 at 800.603 kb on - strand, within RS_RS03810 at 800.603 kb on - strand, within RS_RS03810 at 800.603 kb on - strand, within RS_RS03810 at 800.743 kb on + strand at 800.913 kb on - strand at 801.170 kb on + strand, within RS_RS03815 at 801.191 kb on + strand, within RS_RS03815 at 801.341 kb on + strand, within RS_RS03815 at 801.342 kb on - strand, within RS_RS03815 at 801.443 kb on + strand, within RS_RS03815 at 801.653 kb on + strand, within RS_RS03815 at 801.654 kb on - strand, within RS_RS03815 at 801.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi remove 799,074 + RS_RS03805 0.90 +0.8 799,074 + RS_RS03805 0.90 -2.2 799,075 - RS_RS03805 0.90 +1.0 799,075 - RS_RS03805 0.90 -0.5 799,488 + +0.6 799,489 - +1.0 799,609 + +0.3 799,609 + +0.0 799,609 + -3.8 799,610 - +0.6 799,610 - +0.3 799,717 + -0.5 799,718 - -0.1 799,718 - -1.6 800,012 - RS_RS03810 0.31 -2.1 800,012 - RS_RS03810 0.31 +0.5 800,471 - RS_RS03810 0.69 -0.2 800,593 + RS_RS03810 0.79 -0.1 800,593 + RS_RS03810 0.79 +0.5 800,603 - RS_RS03810 0.80 -0.2 800,603 - RS_RS03810 0.80 -0.2 800,603 - RS_RS03810 0.80 +1.2 800,743 + -0.5 800,913 - +0.4 801,170 + RS_RS03815 0.26 -2.6 801,191 + RS_RS03815 0.29 +0.4 801,341 + RS_RS03815 0.47 +0.1 801,342 - RS_RS03815 0.47 +1.1 801,443 + RS_RS03815 0.59 -1.0 801,653 + RS_RS03815 0.85 -1.2 801,654 - RS_RS03815 0.85 +1.2 801,774 - +0.7
Or see this region's nucleotide sequence