Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02895 and RS_RS02905 are separated by 86 nucleotides RS_RS02905 and RS_RS02910 are separated by 152 nucleotides RS_RS02910 and RS_RS02915 are separated by 19 nucleotides
RS_RS02895: RS_RS02895 - IS3 family transposase, at 622,286 to 623,466
_RS02895
RS_RS02905: RS_RS02905 - lipase, at 623,553 to 624,596
_RS02905
RS_RS02910: RS_RS02910 - phosphoglycolate phosphatase, at 624,749 to 625,450
_RS02910
RS_RS02915: RS_RS02915 - avrd-related protein, at 625,470 to 626,328
_RS02915
Position (kb) 623
624
625 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 623.492 kb on + strand at 623.709 kb on + strand, within RS_RS02905 at 623.709 kb on + strand, within RS_RS02905 at 623.709 kb on + strand, within RS_RS02905 at 623.709 kb on + strand, within RS_RS02905 at 623.709 kb on + strand, within RS_RS02905 at 623.710 kb on - strand, within RS_RS02905 at 623.973 kb on + strand, within RS_RS02905 at 624.005 kb on + strand, within RS_RS02905 at 624.142 kb on - strand, within RS_RS02905 at 624.142 kb on - strand, within RS_RS02905 at 624.180 kb on + strand, within RS_RS02905 at 624.180 kb on + strand, within RS_RS02905 at 624.181 kb on - strand, within RS_RS02905 at 624.181 kb on - strand, within RS_RS02905 at 624.181 kb on - strand, within RS_RS02905 at 624.499 kb on - strand at 624.855 kb on + strand, within RS_RS02910 at 624.855 kb on + strand, within RS_RS02910 at 624.855 kb on + strand, within RS_RS02910 at 624.856 kb on - strand, within RS_RS02910 at 624.856 kb on - strand, within RS_RS02910 at 625.164 kb on + strand, within RS_RS02910 at 625.164 kb on + strand, within RS_RS02910 at 625.164 kb on + strand, within RS_RS02910 at 625.165 kb on - strand, within RS_RS02910 at 625.165 kb on - strand, within RS_RS02910 at 625.185 kb on + strand, within RS_RS02910 at 625.185 kb on + strand, within RS_RS02910 at 625.195 kb on + strand, within RS_RS02910 at 625.196 kb on - strand, within RS_RS02910 at 625.196 kb on - strand, within RS_RS02910 at 625.196 kb on - strand, within RS_RS02910 at 625.197 kb on + strand, within RS_RS02910 at 625.198 kb on - strand, within RS_RS02910 at 625.343 kb on - strand, within RS_RS02910 at 625.413 kb on - strand at 625.441 kb on + strand at 625.589 kb on - strand, within RS_RS02915
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi remove 623,492 + +1.7 623,709 + RS_RS02905 0.15 -2.4 623,709 + RS_RS02905 0.15 +0.3 623,709 + RS_RS02905 0.15 -0.1 623,709 + RS_RS02905 0.15 -0.7 623,709 + RS_RS02905 0.15 +0.1 623,710 - RS_RS02905 0.15 -2.2 623,973 + RS_RS02905 0.40 +0.5 624,005 + RS_RS02905 0.43 +0.6 624,142 - RS_RS02905 0.56 +0.6 624,142 - RS_RS02905 0.56 -2.0 624,180 + RS_RS02905 0.60 -1.2 624,180 + RS_RS02905 0.60 +0.9 624,181 - RS_RS02905 0.60 -0.1 624,181 - RS_RS02905 0.60 -1.0 624,181 - RS_RS02905 0.60 +1.3 624,499 - +0.4 624,855 + RS_RS02910 0.15 +1.0 624,855 + RS_RS02910 0.15 -2.1 624,855 + RS_RS02910 0.15 +0.7 624,856 - RS_RS02910 0.15 -3.8 624,856 - RS_RS02910 0.15 +0.6 625,164 + RS_RS02910 0.59 +0.4 625,164 + RS_RS02910 0.59 +0.1 625,164 + RS_RS02910 0.59 +0.1 625,165 - RS_RS02910 0.59 +1.3 625,165 - RS_RS02910 0.59 -0.2 625,185 + RS_RS02910 0.62 -0.3 625,185 + RS_RS02910 0.62 +0.9 625,195 + RS_RS02910 0.64 +0.3 625,196 - RS_RS02910 0.64 -1.0 625,196 - RS_RS02910 0.64 +0.7 625,196 - RS_RS02910 0.64 +0.9 625,197 + RS_RS02910 0.64 -0.5 625,198 - RS_RS02910 0.64 -0.7 625,343 - RS_RS02910 0.85 -0.5 625,413 - -0.0 625,441 + -0.0 625,589 - RS_RS02915 0.14 -1.1
Or see this region's nucleotide sequence