Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00945 and RS_RS00950 are separated by 2 nucleotides RS_RS00950 and RS_RS00955 are separated by 103 nucleotides RS_RS00955 and RS_RS00960 are separated by 239 nucleotides
RS_RS00945: RS_RS00945 - PAS domain S-box protein, at 212,253 to 213,629
_RS00945
RS_RS00950: RS_RS00950 - DNA-binding response regulator, at 213,632 to 214,279
_RS00950
RS_RS00955: RS_RS00955 - hypothetical protein, at 214,383 to 214,877
_RS00955
RS_RS00960: RS_RS00960 - alcohol dehydrogenase, at 215,117 to 216,154
_RS00960
Position (kb) 213
214
215 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 212.652 kb on - strand, within RS_RS00945 at 213.071 kb on + strand, within RS_RS00945 at 213.071 kb on + strand, within RS_RS00945 at 213.072 kb on - strand, within RS_RS00945 at 213.072 kb on - strand, within RS_RS00945 at 213.423 kb on - strand, within RS_RS00945 at 213.689 kb on - strand at 213.747 kb on + strand, within RS_RS00950 at 213.837 kb on + strand, within RS_RS00950 at 213.838 kb on - strand, within RS_RS00950 at 213.838 kb on - strand, within RS_RS00950 at 213.838 kb on - strand, within RS_RS00950 at 213.896 kb on + strand, within RS_RS00950 at 213.897 kb on - strand, within RS_RS00950 at 213.897 kb on - strand, within RS_RS00950 at 213.933 kb on - strand, within RS_RS00950 at 213.933 kb on - strand, within RS_RS00950 at 213.998 kb on - strand, within RS_RS00950 at 213.998 kb on - strand, within RS_RS00950 at 214.001 kb on + strand, within RS_RS00950 at 214.001 kb on + strand, within RS_RS00950 at 214.001 kb on + strand, within RS_RS00950 at 214.001 kb on + strand, within RS_RS00950 at 214.002 kb on - strand, within RS_RS00950 at 214.002 kb on - strand, within RS_RS00950 at 214.002 kb on - strand, within RS_RS00950 at 214.002 kb on - strand, within RS_RS00950 at 214.002 kb on - strand, within RS_RS00950 at 214.002 kb on - strand, within RS_RS00950 at 214.101 kb on - strand, within RS_RS00950 at 214.171 kb on + strand, within RS_RS00950 at 214.171 kb on + strand, within RS_RS00950 at 214.178 kb on + strand, within RS_RS00950 at 214.178 kb on + strand, within RS_RS00950 at 214.213 kb on + strand, within RS_RS00950 at 214.236 kb on - strand at 214.351 kb on + strand at 214.352 kb on - strand at 214.352 kb on - strand at 214.381 kb on + strand at 214.589 kb on - strand, within RS_RS00955 at 214.681 kb on - strand, within RS_RS00955 at 214.707 kb on - strand, within RS_RS00955 at 214.944 kb on - strand at 214.971 kb on - strand at 215.054 kb on - strand at 215.062 kb on - strand at 215.082 kb on + strand at 215.082 kb on + strand at 215.083 kb on - strand at 215.245 kb on + strand, within RS_RS00960 at 215.245 kb on + strand, within RS_RS00960 at 215.245 kb on + strand, within RS_RS00960 at 215.246 kb on - strand, within RS_RS00960
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi remove 212,652 - RS_RS00945 0.29 +0.1 213,071 + RS_RS00945 0.59 +1.2 213,071 + RS_RS00945 0.59 -1.0 213,072 - RS_RS00945 0.59 +0.0 213,072 - RS_RS00945 0.59 -0.4 213,423 - RS_RS00945 0.85 -3.7 213,689 - +0.5 213,747 + RS_RS00950 0.18 +0.6 213,837 + RS_RS00950 0.32 -0.6 213,838 - RS_RS00950 0.32 -3.8 213,838 - RS_RS00950 0.32 -0.5 213,838 - RS_RS00950 0.32 -4.6 213,896 + RS_RS00950 0.41 +1.6 213,897 - RS_RS00950 0.41 +0.2 213,897 - RS_RS00950 0.41 +0.4 213,933 - RS_RS00950 0.46 +0.3 213,933 - RS_RS00950 0.46 +0.5 213,998 - RS_RS00950 0.56 -1.3 213,998 - RS_RS00950 0.56 -0.3 214,001 + RS_RS00950 0.57 +0.4 214,001 + RS_RS00950 0.57 -1.6 214,001 + RS_RS00950 0.57 +0.5 214,001 + RS_RS00950 0.57 +0.0 214,002 - RS_RS00950 0.57 -0.3 214,002 - RS_RS00950 0.57 +0.3 214,002 - RS_RS00950 0.57 +0.6 214,002 - RS_RS00950 0.57 +0.5 214,002 - RS_RS00950 0.57 +1.1 214,002 - RS_RS00950 0.57 -0.6 214,101 - RS_RS00950 0.72 +0.7 214,171 + RS_RS00950 0.83 -1.5 214,171 + RS_RS00950 0.83 -0.1 214,178 + RS_RS00950 0.84 +0.7 214,178 + RS_RS00950 0.84 +1.8 214,213 + RS_RS00950 0.90 +1.0 214,236 - +0.6 214,351 + -1.9 214,352 - -3.5 214,352 - +1.7 214,381 + -1.8 214,589 - RS_RS00955 0.42 -0.2 214,681 - RS_RS00955 0.60 -1.8 214,707 - RS_RS00955 0.65 -1.0 214,944 - +0.9 214,971 - +0.5 215,054 - -0.3 215,062 - +0.3 215,082 + +0.3 215,082 + -1.9 215,083 - -0.8 215,245 + RS_RS00960 0.12 -1.7 215,245 + RS_RS00960 0.12 +0.9 215,245 + RS_RS00960 0.12 -2.9 215,246 - RS_RS00960 0.12 -3.4
Or see this region's nucleotide sequence