Strain Fitness in Rahnella sp. WP5 around EX31_RS24420

Experiment: Ammonium chloride (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24405 and EX31_RS24410 are separated by 142 nucleotidesEX31_RS24410 and EX31_RS24415 are separated by 12 nucleotidesEX31_RS24415 and EX31_RS24420 are separated by 48 nucleotidesEX31_RS24420 and EX31_RS24425 are separated by 6 nucleotidesEX31_RS24425 and EX31_RS24430 are separated by 18 nucleotides EX31_RS24405: EX31_RS24405 - septum formation inhibitor Maf, at 650,820 to 651,413 _RS24405 EX31_RS24410: EX31_RS24410 - 23S rRNA accumulation protein YceD, at 651,556 to 652,080 _RS24410 EX31_RS24415: EX31_RS24415 - 50S ribosomal protein L32, at 652,093 to 652,260 _RS24415 EX31_RS24420: EX31_RS24420 - phosphate acyltransferase PlsX, at 652,309 to 653,343 _RS24420 EX31_RS24425: EX31_RS24425 - ketoacyl-ACP synthase III, at 653,350 to 654,303 _RS24425 EX31_RS24430: EX31_RS24430 - ACP S-malonyltransferase, at 654,322 to 655,251 _RS24430 Position (kb) 652 653 654Strain fitness (log2 ratio) -2 -1 0 1 2at 651.334 kb on - strand, within EX31_RS24405at 651.433 kb on + strandat 651.434 kb on - strandat 651.504 kb on + strandat 651.541 kb on + strandat 651.544 kb on + strandat 651.619 kb on + strand, within EX31_RS24410at 651.619 kb on + strand, within EX31_RS24410at 651.621 kb on + strand, within EX31_RS24410at 651.631 kb on + strand, within EX31_RS24410at 651.631 kb on + strand, within EX31_RS24410at 651.631 kb on + strand, within EX31_RS24410at 651.631 kb on + strand, within EX31_RS24410at 651.633 kb on + strand, within EX31_RS24410at 651.633 kb on + strand, within EX31_RS24410at 651.633 kb on + strand, within EX31_RS24410at 651.633 kb on + strand, within EX31_RS24410at 651.687 kb on + strand, within EX31_RS24410at 651.689 kb on + strand, within EX31_RS24410at 651.689 kb on + strand, within EX31_RS24410at 651.689 kb on + strand, within EX31_RS24410at 651.689 kb on + strand, within EX31_RS24410at 651.689 kb on + strand, within EX31_RS24410at 651.689 kb on + strand, within EX31_RS24410at 651.689 kb on + strand, within EX31_RS24410at 651.689 kb on + strand, within EX31_RS24410at 651.689 kb on + strand, within EX31_RS24410at 651.689 kb on + strand, within EX31_RS24410at 651.689 kb on + strand, within EX31_RS24410at 651.817 kb on + strand, within EX31_RS24410at 651.817 kb on + strand, within EX31_RS24410at 651.817 kb on + strand, within EX31_RS24410at 651.817 kb on + strand, within EX31_RS24410at 651.817 kb on + strand, within EX31_RS24410at 651.817 kb on + strand, within EX31_RS24410at 651.817 kb on + strand, within EX31_RS24410at 651.817 kb on + strand, within EX31_RS24410at 651.817 kb on + strand, within EX31_RS24410at 651.825 kb on + strand, within EX31_RS24410at 651.871 kb on + strand, within EX31_RS24410at 651.936 kb on + strand, within EX31_RS24410at 651.962 kb on + strand, within EX31_RS24410at 651.962 kb on + strand, within EX31_RS24410at 652.004 kb on + strand, within EX31_RS24410at 652.074 kb on + strandat 652.074 kb on + strandat 652.078 kb on + strandat 652.100 kb on + strandat 652.125 kb on + strand, within EX31_RS24415at 652.250 kb on + strandat 652.261 kb on + strandat 652.276 kb on + strandat 652.276 kb on + strandat 652.276 kb on + strandat 652.287 kb on + strandat 652.319 kb on + strandat 652.331 kb on + strandat 652.331 kb on + strandat 652.331 kb on + strandat 652.337 kb on + strandat 652.337 kb on + strandat 652.337 kb on + strandat 652.337 kb on + strandat 652.337 kb on + strandat 652.337 kb on + strandat 652.337 kb on + strandat 652.338 kb on - strandat 652.398 kb on + strandat 652.409 kb on + strandat 652.409 kb on + strandat 652.409 kb on + strandat 652.512 kb on + strand, within EX31_RS24420at 652.514 kb on + strand, within EX31_RS24420at 652.514 kb on + strand, within EX31_RS24420at 652.526 kb on + strand, within EX31_RS24420at 652.526 kb on + strand, within EX31_RS24420at 652.542 kb on + strand, within EX31_RS24420at 652.554 kb on + strand, within EX31_RS24420at 652.649 kb on + strand, within EX31_RS24420at 652.709 kb on + strand, within EX31_RS24420at 652.709 kb on + strand, within EX31_RS24420at 652.709 kb on + strand, within EX31_RS24420at 652.713 kb on + strand, within EX31_RS24420at 652.725 kb on + strand, within EX31_RS24420at 652.728 kb on + strand, within EX31_RS24420at 652.728 kb on + strand, within EX31_RS24420at 652.939 kb on + strand, within EX31_RS24420at 652.939 kb on + strand, within EX31_RS24420at 652.939 kb on + strand, within EX31_RS24420at 652.939 kb on + strand, within EX31_RS24420at 652.939 kb on + strand, within EX31_RS24420at 652.939 kb on + strand, within EX31_RS24420at 652.939 kb on + strand, within EX31_RS24420at 652.939 kb on + strand, within EX31_RS24420at 652.939 kb on + strand, within EX31_RS24420at 652.939 kb on + strand, within EX31_RS24420at 652.939 kb on + strand, within EX31_RS24420at 653.042 kb on + strand, within EX31_RS24420at 653.042 kb on + strand, within EX31_RS24420at 653.042 kb on + strand, within EX31_RS24420at 653.042 kb on + strand, within EX31_RS24420at 653.045 kb on + strand, within EX31_RS24420at 653.045 kb on + strand, within EX31_RS24420at 653.045 kb on + strand, within EX31_RS24420at 653.045 kb on + strand, within EX31_RS24420at 653.045 kb on + strand, within EX31_RS24420at 653.045 kb on + strand, within EX31_RS24420at 653.045 kb on + strand, within EX31_RS24420at 653.045 kb on + strand, within EX31_RS24420at 653.173 kb on + strand, within EX31_RS24420at 653.175 kb on + strand, within EX31_RS24420at 653.175 kb on + strand, within EX31_RS24420at 653.198 kb on + strand, within EX31_RS24420at 653.214 kb on + strand, within EX31_RS24420at 653.214 kb on + strand, within EX31_RS24420at 653.324 kb on + strandat 653.324 kb on + strandat 653.324 kb on + strandat 653.324 kb on + strandat 653.324 kb on + strandat 653.327 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking
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651,334 - EX31_RS24405 0.87 +1.2
651,433 + -0.1
651,434 - +0.3
651,504 + -0.5
651,541 + -1.2
651,544 + -0.4
651,619 + EX31_RS24410 0.12 +1.7
651,619 + EX31_RS24410 0.12 +0.2
651,621 + EX31_RS24410 0.12 -1.5
651,631 + EX31_RS24410 0.14 +0.9
651,631 + EX31_RS24410 0.14 -0.7
651,631 + EX31_RS24410 0.14 -0.6
651,631 + EX31_RS24410 0.14 -0.1
651,633 + EX31_RS24410 0.15 +0.2
651,633 + EX31_RS24410 0.15 -0.1
651,633 + EX31_RS24410 0.15 +0.4
651,633 + EX31_RS24410 0.15 +0.4
651,687 + EX31_RS24410 0.25 +1.4
651,689 + EX31_RS24410 0.25 -1.3
651,689 + EX31_RS24410 0.25 -0.6
651,689 + EX31_RS24410 0.25 -2.6
651,689 + EX31_RS24410 0.25 -1.9
651,689 + EX31_RS24410 0.25 -0.5
651,689 + EX31_RS24410 0.25 +0.4
651,689 + EX31_RS24410 0.25 -0.6
651,689 + EX31_RS24410 0.25 -1.0
651,689 + EX31_RS24410 0.25 +0.6
651,689 + EX31_RS24410 0.25 -0.8
651,689 + EX31_RS24410 0.25 -0.5
651,817 + EX31_RS24410 0.50 +0.4
651,817 + EX31_RS24410 0.50 +1.3
651,817 + EX31_RS24410 0.50 +0.2
651,817 + EX31_RS24410 0.50 -1.0
651,817 + EX31_RS24410 0.50 +1.4
651,817 + EX31_RS24410 0.50 -1.0
651,817 + EX31_RS24410 0.50 -0.3
651,817 + EX31_RS24410 0.50 +0.0
651,817 + EX31_RS24410 0.50 -1.3
651,825 + EX31_RS24410 0.51 -0.6
651,871 + EX31_RS24410 0.60 -1.0
651,936 + EX31_RS24410 0.72 -0.6
651,962 + EX31_RS24410 0.77 +0.3
651,962 + EX31_RS24410 0.77 -0.7
652,004 + EX31_RS24410 0.85 -0.8
652,074 + -0.3
652,074 + +1.4
652,078 + -0.3
652,100 + -0.6
652,125 + EX31_RS24415 0.19 -1.0
652,250 + -1.0
652,261 + +0.3
652,276 + -1.7
652,276 + -1.4
652,276 + +1.0
652,287 + +1.0
652,319 + +1.0
652,331 + +0.4
652,331 + +1.0
652,331 + -1.9
652,337 + -0.8
652,337 + -1.3
652,337 + -2.1
652,337 + +1.0
652,337 + -0.8
652,337 + -2.0
652,337 + -2.0
652,338 - -1.4
652,398 + +1.0
652,409 + -1.3
652,409 + -1.0
652,409 + -0.8
652,512 + EX31_RS24420 0.20 -0.8
652,514 + EX31_RS24420 0.20 -2.0
652,514 + EX31_RS24420 0.20 -0.6
652,526 + EX31_RS24420 0.21 -1.3
652,526 + EX31_RS24420 0.21 +0.2
652,542 + EX31_RS24420 0.23 -1.1
652,554 + EX31_RS24420 0.24 +0.0
652,649 + EX31_RS24420 0.33 -0.4
652,709 + EX31_RS24420 0.39 -1.2
652,709 + EX31_RS24420 0.39 -0.2
652,709 + EX31_RS24420 0.39 -0.5
652,713 + EX31_RS24420 0.39 -1.4
652,725 + EX31_RS24420 0.40 -1.9
652,728 + EX31_RS24420 0.40 -0.3
652,728 + EX31_RS24420 0.40 -1.9
652,939 + EX31_RS24420 0.61 -0.6
652,939 + EX31_RS24420 0.61 -1.1
652,939 + EX31_RS24420 0.61 -1.0
652,939 + EX31_RS24420 0.61 -0.6
652,939 + EX31_RS24420 0.61 -1.3
652,939 + EX31_RS24420 0.61 -1.5
652,939 + EX31_RS24420 0.61 -0.3
652,939 + EX31_RS24420 0.61 -1.3
652,939 + EX31_RS24420 0.61 -0.8
652,939 + EX31_RS24420 0.61 -0.6
652,939 + EX31_RS24420 0.61 +0.3
653,042 + EX31_RS24420 0.71 -0.0
653,042 + EX31_RS24420 0.71 -2.7
653,042 + EX31_RS24420 0.71 -1.3
653,042 + EX31_RS24420 0.71 -1.0
653,045 + EX31_RS24420 0.71 -1.4
653,045 + EX31_RS24420 0.71 +1.2
653,045 + EX31_RS24420 0.71 +2.6
653,045 + EX31_RS24420 0.71 -0.6
653,045 + EX31_RS24420 0.71 -0.0
653,045 + EX31_RS24420 0.71 -0.6
653,045 + EX31_RS24420 0.71 -2.3
653,045 + EX31_RS24420 0.71 -1.1
653,173 + EX31_RS24420 0.83 -1.8
653,175 + EX31_RS24420 0.84 -2.4
653,175 + EX31_RS24420 0.84 +1.0
653,198 + EX31_RS24420 0.86 -1.4
653,214 + EX31_RS24420 0.87 -2.1
653,214 + EX31_RS24420 0.87 -1.4
653,324 + +0.3
653,324 + -0.7
653,324 + +0.0
653,324 + -0.2
653,324 + -1.3
653,327 + +0.6

Or see this region's nucleotide sequence