Strain Fitness in Rahnella sp. WP5 around EX31_RS18580

Experiment: Ammonium chloride (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18575 and EX31_RS18580 overlap by 4 nucleotidesEX31_RS18580 and EX31_RS18585 are separated by 189 nucleotides EX31_RS18575: EX31_RS18575 - DUF535 domain-containing protein, at 291,391 to 292,380 _RS18575 EX31_RS18580: EX31_RS18580 - ATP-dependent endonuclease, at 292,377 to 294,110 _RS18580 EX31_RS18585: EX31_RS18585 - lysine exporter LysO family protein, at 294,300 to 295,199 _RS18585 Position (kb) 292 293 294 295Strain fitness (log2 ratio) -2 -1 0 1 2 3at 291.384 kb on + strandat 291.384 kb on + strandat 291.385 kb on - strandat 291.396 kb on + strandat 291.396 kb on + strandat 291.397 kb on - strandat 291.397 kb on - strandat 291.406 kb on + strandat 291.407 kb on - strandat 291.432 kb on + strandat 291.446 kb on + strandat 291.446 kb on + strandat 291.446 kb on + strandat 291.473 kb on + strandat 291.505 kb on + strand, within EX31_RS18575at 291.569 kb on - strand, within EX31_RS18575at 291.627 kb on + strand, within EX31_RS18575at 291.627 kb on + strand, within EX31_RS18575at 291.627 kb on + strand, within EX31_RS18575at 291.627 kb on + strand, within EX31_RS18575at 291.627 kb on + strand, within EX31_RS18575at 291.628 kb on - strand, within EX31_RS18575at 291.628 kb on - strand, within EX31_RS18575at 291.657 kb on + strand, within EX31_RS18575at 291.697 kb on + strand, within EX31_RS18575at 291.697 kb on + strand, within EX31_RS18575at 291.697 kb on + strand, within EX31_RS18575at 291.697 kb on + strand, within EX31_RS18575at 291.697 kb on + strand, within EX31_RS18575at 291.698 kb on - strand, within EX31_RS18575at 291.702 kb on + strand, within EX31_RS18575at 291.702 kb on + strand, within EX31_RS18575at 291.702 kb on + strand, within EX31_RS18575at 291.729 kb on + strand, within EX31_RS18575at 291.732 kb on + strand, within EX31_RS18575at 291.861 kb on + strand, within EX31_RS18575at 291.861 kb on + strand, within EX31_RS18575at 291.861 kb on + strand, within EX31_RS18575at 291.861 kb on + strand, within EX31_RS18575at 291.861 kb on + strand, within EX31_RS18575at 291.861 kb on + strand, within EX31_RS18575at 291.861 kb on + strand, within EX31_RS18575at 291.864 kb on + strand, within EX31_RS18575at 291.913 kb on + strand, within EX31_RS18575at 291.913 kb on + strand, within EX31_RS18575at 291.914 kb on - strand, within EX31_RS18575at 291.927 kb on + strand, within EX31_RS18575at 291.928 kb on - strand, within EX31_RS18575at 291.983 kb on + strand, within EX31_RS18575at 292.020 kb on + strand, within EX31_RS18575at 292.104 kb on + strand, within EX31_RS18575at 292.104 kb on + strand, within EX31_RS18575at 292.104 kb on + strand, within EX31_RS18575at 292.104 kb on + strand, within EX31_RS18575at 292.104 kb on + strand, within EX31_RS18575at 292.105 kb on - strand, within EX31_RS18575at 292.105 kb on - strand, within EX31_RS18575at 292.105 kb on - strand, within EX31_RS18575at 292.105 kb on - strand, within EX31_RS18575at 292.156 kb on + strand, within EX31_RS18575at 292.185 kb on + strand, within EX31_RS18575at 292.204 kb on + strand, within EX31_RS18575at 292.204 kb on + strand, within EX31_RS18575at 292.214 kb on + strand, within EX31_RS18575at 292.214 kb on + strand, within EX31_RS18575at 292.214 kb on + strand, within EX31_RS18575at 292.215 kb on - strand, within EX31_RS18575at 292.257 kb on + strand, within EX31_RS18575at 292.258 kb on - strand, within EX31_RS18575at 292.443 kb on - strandat 292.520 kb on + strandat 292.603 kb on + strand, within EX31_RS18580at 292.658 kb on + strand, within EX31_RS18580at 292.658 kb on + strand, within EX31_RS18580at 292.658 kb on + strand, within EX31_RS18580at 292.659 kb on - strand, within EX31_RS18580at 292.659 kb on - strand, within EX31_RS18580at 292.699 kb on + strand, within EX31_RS18580at 292.699 kb on + strand, within EX31_RS18580at 292.699 kb on + strand, within EX31_RS18580at 292.699 kb on + strand, within EX31_RS18580at 292.700 kb on - strand, within EX31_RS18580at 292.964 kb on + strand, within EX31_RS18580at 292.991 kb on - strand, within EX31_RS18580at 293.028 kb on + strand, within EX31_RS18580at 293.028 kb on + strand, within EX31_RS18580at 293.029 kb on - strand, within EX31_RS18580at 293.106 kb on + strand, within EX31_RS18580at 293.106 kb on + strand, within EX31_RS18580at 293.106 kb on + strand, within EX31_RS18580at 293.124 kb on + strand, within EX31_RS18580at 293.167 kb on - strand, within EX31_RS18580at 293.215 kb on - strand, within EX31_RS18580at 293.215 kb on - strand, within EX31_RS18580at 293.253 kb on - strand, within EX31_RS18580at 293.384 kb on - strand, within EX31_RS18580at 293.504 kb on + strand, within EX31_RS18580at 293.504 kb on + strand, within EX31_RS18580at 293.574 kb on + strand, within EX31_RS18580at 293.574 kb on + strand, within EX31_RS18580at 293.575 kb on - strand, within EX31_RS18580at 293.575 kb on - strand, within EX31_RS18580at 293.575 kb on - strand, within EX31_RS18580at 293.575 kb on - strand, within EX31_RS18580at 293.575 kb on - strand, within EX31_RS18580at 293.631 kb on + strand, within EX31_RS18580at 293.632 kb on - strand, within EX31_RS18580at 293.710 kb on + strand, within EX31_RS18580at 293.711 kb on - strand, within EX31_RS18580at 293.713 kb on + strand, within EX31_RS18580at 293.713 kb on + strand, within EX31_RS18580at 293.713 kb on + strand, within EX31_RS18580at 293.713 kb on + strand, within EX31_RS18580at 293.713 kb on + strand, within EX31_RS18580at 293.713 kb on + strand, within EX31_RS18580at 293.713 kb on + strand, within EX31_RS18580at 293.713 kb on + strand, within EX31_RS18580at 293.713 kb on + strand, within EX31_RS18580at 293.713 kb on + strand, within EX31_RS18580at 293.713 kb on + strand, within EX31_RS18580at 293.713 kb on + strand, within EX31_RS18580at 293.714 kb on - strand, within EX31_RS18580at 293.714 kb on - strand, within EX31_RS18580at 293.714 kb on - strand, within EX31_RS18580at 293.714 kb on - strand, within EX31_RS18580at 293.714 kb on - strand, within EX31_RS18580at 293.714 kb on - strand, within EX31_RS18580at 293.717 kb on + strand, within EX31_RS18580at 293.717 kb on + strand, within EX31_RS18580at 293.717 kb on + strand, within EX31_RS18580at 293.717 kb on + strand, within EX31_RS18580at 293.717 kb on + strand, within EX31_RS18580at 293.780 kb on + strand, within EX31_RS18580at 293.780 kb on + strand, within EX31_RS18580at 293.780 kb on + strand, within EX31_RS18580at 293.780 kb on + strand, within EX31_RS18580at 293.780 kb on + strand, within EX31_RS18580at 293.780 kb on + strand, within EX31_RS18580at 293.780 kb on + strand, within EX31_RS18580at 293.781 kb on - strand, within EX31_RS18580at 293.781 kb on - strand, within EX31_RS18580at 293.781 kb on - strand, within EX31_RS18580at 293.781 kb on - strand, within EX31_RS18580at 293.781 kb on - strand, within EX31_RS18580at 293.781 kb on - strand, within EX31_RS18580at 293.781 kb on - strand, within EX31_RS18580at 293.781 kb on - strand, within EX31_RS18580at 293.781 kb on - strand, within EX31_RS18580at 293.781 kb on - strand, within EX31_RS18580at 293.781 kb on - strand, within EX31_RS18580at 293.811 kb on - strand, within EX31_RS18580at 293.827 kb on + strand, within EX31_RS18580at 293.827 kb on + strand, within EX31_RS18580at 293.827 kb on + strand, within EX31_RS18580at 293.863 kb on + strand, within EX31_RS18580at 293.864 kb on - strand, within EX31_RS18580at 293.864 kb on - strand, within EX31_RS18580at 293.879 kb on + strand, within EX31_RS18580at 293.887 kb on + strand, within EX31_RS18580at 293.887 kb on + strand, within EX31_RS18580at 293.888 kb on - strand, within EX31_RS18580at 293.888 kb on - strand, within EX31_RS18580at 293.888 kb on - strand, within EX31_RS18580at 293.888 kb on - strand, within EX31_RS18580at 293.895 kb on - strand, within EX31_RS18580at 293.919 kb on + strand, within EX31_RS18580at 293.919 kb on + strand, within EX31_RS18580at 293.919 kb on + strand, within EX31_RS18580at 293.920 kb on - strand, within EX31_RS18580at 293.965 kb on - strandat 294.089 kb on + strandat 294.089 kb on + strandat 294.089 kb on + strandat 294.090 kb on - strandat 294.090 kb on - strandat 294.106 kb on + strandat 294.106 kb on + strandat 294.107 kb on - strandat 294.184 kb on + strandat 294.184 kb on + strandat 294.184 kb on + strandat 294.185 kb on - strandat 294.185 kb on - strandat 294.208 kb on + strandat 294.209 kb on - strandat 294.249 kb on + strandat 294.249 kb on + strandat 294.249 kb on + strandat 294.249 kb on + strandat 294.250 kb on - strandat 294.250 kb on - strandat 294.250 kb on - strandat 294.250 kb on - strandat 294.250 kb on - strandat 294.250 kb on - strandat 294.277 kb on + strandat 294.278 kb on - strandat 294.278 kb on - strandat 294.303 kb on + strandat 294.303 kb on + strandat 294.303 kb on + strandat 294.303 kb on + strandat 294.304 kb on - strandat 294.304 kb on - strandat 294.316 kb on + strandat 294.317 kb on - strandat 294.320 kb on + strandat 294.320 kb on + strandat 294.321 kb on - strandat 294.321 kb on - strandat 294.321 kb on - strandat 294.350 kb on + strandat 294.350 kb on + strandat 294.351 kb on - strandat 294.394 kb on + strand, within EX31_RS18585at 294.395 kb on - strand, within EX31_RS18585at 294.411 kb on + strand, within EX31_RS18585at 294.411 kb on + strand, within EX31_RS18585at 294.411 kb on + strand, within EX31_RS18585at 294.411 kb on + strand, within EX31_RS18585at 294.412 kb on - strand, within EX31_RS18585at 294.412 kb on - strand, within EX31_RS18585at 294.412 kb on - strand, within EX31_RS18585at 294.412 kb on - strand, within EX31_RS18585at 294.412 kb on - strand, within EX31_RS18585at 294.412 kb on - strand, within EX31_RS18585at 294.489 kb on + strand, within EX31_RS18585at 294.489 kb on + strand, within EX31_RS18585at 294.490 kb on - strand, within EX31_RS18585at 294.528 kb on + strand, within EX31_RS18585at 294.528 kb on + strand, within EX31_RS18585at 294.576 kb on + strand, within EX31_RS18585at 294.577 kb on - strand, within EX31_RS18585at 294.578 kb on + strand, within EX31_RS18585at 294.579 kb on - strand, within EX31_RS18585at 294.687 kb on - strand, within EX31_RS18585at 294.721 kb on + strand, within EX31_RS18585at 294.721 kb on + strand, within EX31_RS18585at 294.721 kb on + strand, within EX31_RS18585at 294.721 kb on + strand, within EX31_RS18585at 294.915 kb on + strand, within EX31_RS18585at 294.915 kb on + strand, within EX31_RS18585at 294.916 kb on - strand, within EX31_RS18585at 294.980 kb on + strand, within EX31_RS18585at 295.086 kb on - strand, within EX31_RS18585

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking
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291,384 + -0.3
291,384 + +0.3
291,385 - +0.6
291,396 + -0.4
291,396 + -0.0
291,397 - +1.5
291,397 - +0.7
291,406 + -0.2
291,407 - +0.6
291,432 + -1.1
291,446 + +0.6
291,446 + +0.0
291,446 + -0.1
291,473 + -0.7
291,505 + EX31_RS18575 0.12 +0.4
291,569 - EX31_RS18575 0.18 +1.5
291,627 + EX31_RS18575 0.24 +0.6
291,627 + EX31_RS18575 0.24 +0.3
291,627 + EX31_RS18575 0.24 +0.8
291,627 + EX31_RS18575 0.24 -2.0
291,627 + EX31_RS18575 0.24 -0.4
291,628 - EX31_RS18575 0.24 +0.1
291,628 - EX31_RS18575 0.24 +1.4
291,657 + EX31_RS18575 0.27 -0.3
291,697 + EX31_RS18575 0.31 +0.0
291,697 + EX31_RS18575 0.31 +0.3
291,697 + EX31_RS18575 0.31 -0.0
291,697 + EX31_RS18575 0.31 -0.2
291,697 + EX31_RS18575 0.31 -0.4
291,698 - EX31_RS18575 0.31 +0.2
291,702 + EX31_RS18575 0.31 -0.2
291,702 + EX31_RS18575 0.31 +0.6
291,702 + EX31_RS18575 0.31 -0.5
291,729 + EX31_RS18575 0.34 +0.8
291,732 + EX31_RS18575 0.34 +0.2
291,861 + EX31_RS18575 0.47 -0.3
291,861 + EX31_RS18575 0.47 +0.2
291,861 + EX31_RS18575 0.47 -1.0
291,861 + EX31_RS18575 0.47 -0.3
291,861 + EX31_RS18575 0.47 -0.1
291,861 + EX31_RS18575 0.47 +0.1
291,861 + EX31_RS18575 0.47 -0.2
291,864 + EX31_RS18575 0.48 +0.4
291,913 + EX31_RS18575 0.53 +0.8
291,913 + EX31_RS18575 0.53 -0.1
291,914 - EX31_RS18575 0.53 -1.6
291,927 + EX31_RS18575 0.54 +0.1
291,928 - EX31_RS18575 0.54 +1.6
291,983 + EX31_RS18575 0.60 +0.8
292,020 + EX31_RS18575 0.64 +0.4
292,104 + EX31_RS18575 0.72 -1.1
292,104 + EX31_RS18575 0.72 +0.6
292,104 + EX31_RS18575 0.72 +1.6
292,104 + EX31_RS18575 0.72 +0.5
292,104 + EX31_RS18575 0.72 +0.3
292,105 - EX31_RS18575 0.72 +0.1
292,105 - EX31_RS18575 0.72 +2.1
292,105 - EX31_RS18575 0.72 +0.9
292,105 - EX31_RS18575 0.72 +2.1
292,156 + EX31_RS18575 0.77 +0.5
292,185 + EX31_RS18575 0.80 -0.6
292,204 + EX31_RS18575 0.82 +0.3
292,204 + EX31_RS18575 0.82 -0.2
292,214 + EX31_RS18575 0.83 +0.9
292,214 + EX31_RS18575 0.83 -0.5
292,214 + EX31_RS18575 0.83 +1.1
292,215 - EX31_RS18575 0.83 +0.2
292,257 + EX31_RS18575 0.87 +0.5
292,258 - EX31_RS18575 0.88 -0.9
292,443 - -0.0
292,520 + -0.6
292,603 + EX31_RS18580 0.13 -0.1
292,658 + EX31_RS18580 0.16 -0.6
292,658 + EX31_RS18580 0.16 +1.3
292,658 + EX31_RS18580 0.16 +0.1
292,659 - EX31_RS18580 0.16 +1.7
292,659 - EX31_RS18580 0.16 -1.1
292,699 + EX31_RS18580 0.19 -0.9
292,699 + EX31_RS18580 0.19 -0.6
292,699 + EX31_RS18580 0.19 -1.5
292,699 + EX31_RS18580 0.19 -0.7
292,700 - EX31_RS18580 0.19 +0.3
292,964 + EX31_RS18580 0.34 +0.6
292,991 - EX31_RS18580 0.35 -1.2
293,028 + EX31_RS18580 0.38 -2.0
293,028 + EX31_RS18580 0.38 -0.8
293,029 - EX31_RS18580 0.38 +1.4
293,106 + EX31_RS18580 0.42 +0.2
293,106 + EX31_RS18580 0.42 -1.2
293,106 + EX31_RS18580 0.42 -0.6
293,124 + EX31_RS18580 0.43 -1.3
293,167 - EX31_RS18580 0.46 +1.2
293,215 - EX31_RS18580 0.48 -1.4
293,215 - EX31_RS18580 0.48 +0.6
293,253 - EX31_RS18580 0.51 +1.3
293,384 - EX31_RS18580 0.58 -0.0
293,504 + EX31_RS18580 0.65 -0.1
293,504 + EX31_RS18580 0.65 +1.2
293,574 + EX31_RS18580 0.69 +1.5
293,574 + EX31_RS18580 0.69 +0.3
293,575 - EX31_RS18580 0.69 -0.2
293,575 - EX31_RS18580 0.69 -0.2
293,575 - EX31_RS18580 0.69 +0.4
293,575 - EX31_RS18580 0.69 -0.9
293,575 - EX31_RS18580 0.69 +0.3
293,631 + EX31_RS18580 0.72 +0.2
293,632 - EX31_RS18580 0.72 -1.4
293,710 + EX31_RS18580 0.77 +0.0
293,711 - EX31_RS18580 0.77 +1.3
293,713 + EX31_RS18580 0.77 +1.5
293,713 + EX31_RS18580 0.77 -0.6
293,713 + EX31_RS18580 0.77 -1.0
293,713 + EX31_RS18580 0.77 +0.2
293,713 + EX31_RS18580 0.77 -0.6
293,713 + EX31_RS18580 0.77 -2.1
293,713 + EX31_RS18580 0.77 -0.4
293,713 + EX31_RS18580 0.77 +0.5
293,713 + EX31_RS18580 0.77 -0.4
293,713 + EX31_RS18580 0.77 +0.2
293,713 + EX31_RS18580 0.77 +2.1
293,713 + EX31_RS18580 0.77 -0.7
293,714 - EX31_RS18580 0.77 -0.7
293,714 - EX31_RS18580 0.77 +0.2
293,714 - EX31_RS18580 0.77 -0.3
293,714 - EX31_RS18580 0.77 -1.2
293,714 - EX31_RS18580 0.77 +1.0
293,714 - EX31_RS18580 0.77 +2.1
293,717 + EX31_RS18580 0.77 +0.5
293,717 + EX31_RS18580 0.77 -0.3
293,717 + EX31_RS18580 0.77 +0.7
293,717 + EX31_RS18580 0.77 +0.9
293,717 + EX31_RS18580 0.77 +1.4
293,780 + EX31_RS18580 0.81 -1.1
293,780 + EX31_RS18580 0.81 -2.6
293,780 + EX31_RS18580 0.81 -0.3
293,780 + EX31_RS18580 0.81 +0.3
293,780 + EX31_RS18580 0.81 -0.2
293,780 + EX31_RS18580 0.81 +0.1
293,780 + EX31_RS18580 0.81 -0.4
293,781 - EX31_RS18580 0.81 -0.9
293,781 - EX31_RS18580 0.81 +0.5
293,781 - EX31_RS18580 0.81 -0.5
293,781 - EX31_RS18580 0.81 -0.6
293,781 - EX31_RS18580 0.81 -1.1
293,781 - EX31_RS18580 0.81 +2.1
293,781 - EX31_RS18580 0.81 +0.5
293,781 - EX31_RS18580 0.81 -0.4
293,781 - EX31_RS18580 0.81 -0.6
293,781 - EX31_RS18580 0.81 +1.5
293,781 - EX31_RS18580 0.81 -0.5
293,811 - EX31_RS18580 0.83 +3.7
293,827 + EX31_RS18580 0.84 -1.1
293,827 + EX31_RS18580 0.84 +1.7
293,827 + EX31_RS18580 0.84 +0.1
293,863 + EX31_RS18580 0.86 +0.3
293,864 - EX31_RS18580 0.86 +1.5
293,864 - EX31_RS18580 0.86 -0.5
293,879 + EX31_RS18580 0.87 -2.0
293,887 + EX31_RS18580 0.87 +1.4
293,887 + EX31_RS18580 0.87 +0.9
293,888 - EX31_RS18580 0.87 -0.8
293,888 - EX31_RS18580 0.87 -0.1
293,888 - EX31_RS18580 0.87 +2.1
293,888 - EX31_RS18580 0.87 -0.0
293,895 - EX31_RS18580 0.88 -0.4
293,919 + EX31_RS18580 0.89 -0.2
293,919 + EX31_RS18580 0.89 -1.0
293,919 + EX31_RS18580 0.89 +1.1
293,920 - EX31_RS18580 0.89 +0.7
293,965 - -1.2
294,089 + -0.4
294,089 + +0.2
294,089 + +2.1
294,090 - +0.5
294,090 - +1.1
294,106 + +0.3
294,106 + -0.4
294,107 - -1.2
294,184 + -0.0
294,184 + +1.0
294,184 + -1.6
294,185 - +1.3
294,185 - -1.8
294,208 + +0.2
294,209 - -0.1
294,249 + +0.5
294,249 + +0.2
294,249 + -0.3
294,249 + -0.6
294,250 - -0.3
294,250 - +0.6
294,250 - -1.6
294,250 - -0.1
294,250 - -0.6
294,250 - -0.0
294,277 + +0.1
294,278 - +0.8
294,278 - +0.3
294,303 + -0.8
294,303 + -0.1
294,303 + -0.1
294,303 + +0.5
294,304 - +0.8
294,304 - -1.2
294,316 + -0.4
294,317 - +0.5
294,320 + -0.2
294,320 + -0.2
294,321 - +0.3
294,321 - -0.2
294,321 - -1.1
294,350 + +1.6
294,350 + -0.2
294,351 - -0.6
294,394 + EX31_RS18585 0.10 +0.3
294,395 - EX31_RS18585 0.11 +0.2
294,411 + EX31_RS18585 0.12 -0.1
294,411 + EX31_RS18585 0.12 -0.4
294,411 + EX31_RS18585 0.12 -0.5
294,411 + EX31_RS18585 0.12 -0.0
294,412 - EX31_RS18585 0.12 -0.9
294,412 - EX31_RS18585 0.12 +1.3
294,412 - EX31_RS18585 0.12 +0.1
294,412 - EX31_RS18585 0.12 +0.4
294,412 - EX31_RS18585 0.12 +0.2
294,412 - EX31_RS18585 0.12 -0.4
294,489 + EX31_RS18585 0.21 -1.9
294,489 + EX31_RS18585 0.21 -0.2
294,490 - EX31_RS18585 0.21 +0.1
294,528 + EX31_RS18585 0.25 +1.3
294,528 + EX31_RS18585 0.25 +0.0
294,576 + EX31_RS18585 0.31 -0.6
294,577 - EX31_RS18585 0.31 +0.7
294,578 + EX31_RS18585 0.31 +0.3
294,579 - EX31_RS18585 0.31 +0.0
294,687 - EX31_RS18585 0.43 +0.5
294,721 + EX31_RS18585 0.47 +0.2
294,721 + EX31_RS18585 0.47 -0.8
294,721 + EX31_RS18585 0.47 -0.7
294,721 + EX31_RS18585 0.47 +0.2
294,915 + EX31_RS18585 0.68 +0.7
294,915 + EX31_RS18585 0.68 +0.1
294,916 - EX31_RS18585 0.68 +0.8
294,980 + EX31_RS18585 0.76 -1.1
295,086 - EX31_RS18585 0.87 +0.3

Or see this region's nucleotide sequence