Strain Fitness in Rahnella sp. WP5 around EX31_RS12865

Experiment: Ammonium chloride (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12860 and EX31_RS12865 are separated by 57 nucleotides EX31_RS12860: EX31_RS12860 - M48 family metallopeptidase, at 246,776 to 247,801 _RS12860 EX31_RS12865: EX31_RS12865 - fimbrial protein, at 247,859 to 248,146 _RS12865 Position (kb) 247 248 249Strain fitness (log2 ratio) -2 -1 0 1 2 3at 247.033 kb on - strand, within EX31_RS12860at 247.034 kb on + strand, within EX31_RS12860at 247.034 kb on + strand, within EX31_RS12860at 247.034 kb on + strand, within EX31_RS12860at 247.034 kb on + strand, within EX31_RS12860at 247.034 kb on + strand, within EX31_RS12860at 247.034 kb on + strand, within EX31_RS12860at 247.035 kb on - strand, within EX31_RS12860at 247.035 kb on - strand, within EX31_RS12860at 247.035 kb on - strand, within EX31_RS12860at 247.052 kb on - strand, within EX31_RS12860at 247.103 kb on + strand, within EX31_RS12860at 247.103 kb on + strand, within EX31_RS12860at 247.103 kb on + strand, within EX31_RS12860at 247.104 kb on - strand, within EX31_RS12860at 247.104 kb on - strand, within EX31_RS12860at 247.104 kb on - strand, within EX31_RS12860at 247.104 kb on - strand, within EX31_RS12860at 247.105 kb on + strand, within EX31_RS12860at 247.105 kb on + strand, within EX31_RS12860at 247.106 kb on - strand, within EX31_RS12860at 247.106 kb on - strand, within EX31_RS12860at 247.109 kb on + strand, within EX31_RS12860at 247.109 kb on + strand, within EX31_RS12860at 247.109 kb on + strand, within EX31_RS12860at 247.109 kb on + strand, within EX31_RS12860at 247.110 kb on - strand, within EX31_RS12860at 247.110 kb on - strand, within EX31_RS12860at 247.187 kb on - strand, within EX31_RS12860at 247.290 kb on + strand, within EX31_RS12860at 247.290 kb on + strand, within EX31_RS12860at 247.291 kb on - strand, within EX31_RS12860at 247.303 kb on + strand, within EX31_RS12860at 247.304 kb on - strand, within EX31_RS12860at 247.304 kb on - strand, within EX31_RS12860at 247.388 kb on - strand, within EX31_RS12860at 247.432 kb on - strand, within EX31_RS12860at 247.515 kb on + strand, within EX31_RS12860at 247.516 kb on - strand, within EX31_RS12860at 247.554 kb on + strand, within EX31_RS12860at 247.554 kb on + strand, within EX31_RS12860at 247.554 kb on + strand, within EX31_RS12860at 247.554 kb on + strand, within EX31_RS12860at 247.555 kb on - strand, within EX31_RS12860at 247.555 kb on - strand, within EX31_RS12860at 247.555 kb on - strand, within EX31_RS12860at 247.555 kb on - strand, within EX31_RS12860at 247.555 kb on - strand, within EX31_RS12860at 247.555 kb on - strand, within EX31_RS12860at 247.555 kb on - strand, within EX31_RS12860at 247.555 kb on - strand, within EX31_RS12860at 247.555 kb on - strand, within EX31_RS12860at 247.555 kb on - strand, within EX31_RS12860at 247.557 kb on + strand, within EX31_RS12860at 247.557 kb on + strand, within EX31_RS12860at 247.557 kb on + strand, within EX31_RS12860at 247.558 kb on - strand, within EX31_RS12860at 247.558 kb on - strand, within EX31_RS12860at 247.558 kb on - strand, within EX31_RS12860at 247.558 kb on - strand, within EX31_RS12860at 247.558 kb on - strand, within EX31_RS12860at 247.558 kb on - strand, within EX31_RS12860at 247.632 kb on + strand, within EX31_RS12860at 247.632 kb on + strand, within EX31_RS12860at 247.679 kb on + strand, within EX31_RS12860at 247.679 kb on + strand, within EX31_RS12860at 247.679 kb on + strand, within EX31_RS12860at 247.680 kb on - strand, within EX31_RS12860at 247.724 kb on + strandat 247.724 kb on + strandat 247.724 kb on + strandat 247.724 kb on + strandat 247.724 kb on + strandat 247.724 kb on + strandat 247.725 kb on - strandat 247.725 kb on - strandat 247.725 kb on - strandat 247.725 kb on - strandat 247.728 kb on + strandat 247.729 kb on - strandat 247.729 kb on - strandat 247.729 kb on - strandat 247.757 kb on - strandat 247.770 kb on + strandat 247.770 kb on + strandat 247.770 kb on + strandat 247.777 kb on + strandat 247.777 kb on + strandat 247.777 kb on + strandat 247.777 kb on + strandat 247.777 kb on + strandat 247.777 kb on + strandat 247.777 kb on + strandat 247.778 kb on - strandat 247.778 kb on - strandat 247.800 kb on - strandat 247.811 kb on + strandat 247.834 kb on + strandat 247.861 kb on - strandat 247.866 kb on + strandat 247.866 kb on + strandat 247.867 kb on - strandat 247.872 kb on - strandat 247.872 kb on - strandat 247.915 kb on + strand, within EX31_RS12865at 247.915 kb on + strand, within EX31_RS12865at 247.915 kb on + strand, within EX31_RS12865at 247.915 kb on + strand, within EX31_RS12865at 247.915 kb on + strand, within EX31_RS12865at 247.915 kb on + strand, within EX31_RS12865at 247.915 kb on + strand, within EX31_RS12865at 247.915 kb on + strand, within EX31_RS12865at 247.916 kb on - strand, within EX31_RS12865at 247.916 kb on - strand, within EX31_RS12865at 247.916 kb on - strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.928 kb on + strand, within EX31_RS12865at 247.929 kb on - strand, within EX31_RS12865at 247.929 kb on - strand, within EX31_RS12865at 247.929 kb on - strand, within EX31_RS12865at 247.929 kb on - strand, within EX31_RS12865at 247.929 kb on - strand, within EX31_RS12865at 247.929 kb on - strand, within EX31_RS12865at 247.929 kb on - strand, within EX31_RS12865at 247.929 kb on - strand, within EX31_RS12865at 247.929 kb on - strand, within EX31_RS12865at 247.929 kb on - strand, within EX31_RS12865at 247.932 kb on + strand, within EX31_RS12865at 247.932 kb on + strand, within EX31_RS12865at 247.932 kb on + strand, within EX31_RS12865at 247.932 kb on + strand, within EX31_RS12865at 247.932 kb on + strand, within EX31_RS12865at 247.932 kb on + strand, within EX31_RS12865at 247.933 kb on - strand, within EX31_RS12865at 247.933 kb on - strand, within EX31_RS12865at 247.933 kb on - strand, within EX31_RS12865at 247.933 kb on - strand, within EX31_RS12865at 247.933 kb on - strand, within EX31_RS12865at 248.014 kb on + strand, within EX31_RS12865at 248.014 kb on + strand, within EX31_RS12865at 248.014 kb on + strand, within EX31_RS12865at 248.014 kb on + strand, within EX31_RS12865at 248.014 kb on + strand, within EX31_RS12865at 248.014 kb on + strand, within EX31_RS12865at 248.014 kb on + strand, within EX31_RS12865at 248.015 kb on - strand, within EX31_RS12865at 248.015 kb on - strand, within EX31_RS12865at 248.015 kb on - strand, within EX31_RS12865at 248.015 kb on - strand, within EX31_RS12865at 248.017 kb on + strand, within EX31_RS12865at 248.017 kb on + strand, within EX31_RS12865at 248.018 kb on - strand, within EX31_RS12865at 248.018 kb on - strand, within EX31_RS12865at 248.018 kb on - strand, within EX31_RS12865at 248.018 kb on - strand, within EX31_RS12865at 248.018 kb on - strand, within EX31_RS12865at 248.020 kb on + strand, within EX31_RS12865at 248.021 kb on - strand, within EX31_RS12865at 248.034 kb on - strand, within EX31_RS12865at 248.034 kb on - strand, within EX31_RS12865at 248.034 kb on - strand, within EX31_RS12865at 248.034 kb on - strand, within EX31_RS12865at 248.034 kb on - strand, within EX31_RS12865at 248.039 kb on + strand, within EX31_RS12865at 248.072 kb on - strand, within EX31_RS12865

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking
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247,033 - EX31_RS12860 0.25 +0.0
247,034 + EX31_RS12860 0.25 +0.8
247,034 + EX31_RS12860 0.25 -0.4
247,034 + EX31_RS12860 0.25 +0.5
247,034 + EX31_RS12860 0.25 -0.6
247,034 + EX31_RS12860 0.25 -1.3
247,034 + EX31_RS12860 0.25 -1.1
247,035 - EX31_RS12860 0.25 -0.3
247,035 - EX31_RS12860 0.25 +0.0
247,035 - EX31_RS12860 0.25 +0.5
247,052 - EX31_RS12860 0.27 +0.1
247,103 + EX31_RS12860 0.32 -0.3
247,103 + EX31_RS12860 0.32 -0.4
247,103 + EX31_RS12860 0.32 -0.1
247,104 - EX31_RS12860 0.32 -1.7
247,104 - EX31_RS12860 0.32 +0.6
247,104 - EX31_RS12860 0.32 -1.1
247,104 - EX31_RS12860 0.32 -0.5
247,105 + EX31_RS12860 0.32 -0.2
247,105 + EX31_RS12860 0.32 +0.5
247,106 - EX31_RS12860 0.32 -0.8
247,106 - EX31_RS12860 0.32 -1.4
247,109 + EX31_RS12860 0.32 +0.1
247,109 + EX31_RS12860 0.32 +0.4
247,109 + EX31_RS12860 0.32 +0.6
247,109 + EX31_RS12860 0.32 +2.5
247,110 - EX31_RS12860 0.33 +0.8
247,110 - EX31_RS12860 0.33 -0.3
247,187 - EX31_RS12860 0.40 -1.6
247,290 + EX31_RS12860 0.50 +0.2
247,290 + EX31_RS12860 0.50 -0.0
247,291 - EX31_RS12860 0.50 +1.5
247,303 + EX31_RS12860 0.51 +0.6
247,304 - EX31_RS12860 0.51 +0.7
247,304 - EX31_RS12860 0.51 -0.2
247,388 - EX31_RS12860 0.60 +0.4
247,432 - EX31_RS12860 0.64 -0.0
247,515 + EX31_RS12860 0.72 -1.2
247,516 - EX31_RS12860 0.72 +0.3
247,554 + EX31_RS12860 0.76 -0.1
247,554 + EX31_RS12860 0.76 +1.5
247,554 + EX31_RS12860 0.76 +0.2
247,554 + EX31_RS12860 0.76 -0.3
247,555 - EX31_RS12860 0.76 +0.3
247,555 - EX31_RS12860 0.76 +0.7
247,555 - EX31_RS12860 0.76 -1.0
247,555 - EX31_RS12860 0.76 -0.6
247,555 - EX31_RS12860 0.76 -1.1
247,555 - EX31_RS12860 0.76 +0.5
247,555 - EX31_RS12860 0.76 -0.7
247,555 - EX31_RS12860 0.76 +1.6
247,555 - EX31_RS12860 0.76 -0.5
247,555 - EX31_RS12860 0.76 -1.2
247,557 + EX31_RS12860 0.76 -0.8
247,557 + EX31_RS12860 0.76 -1.2
247,557 + EX31_RS12860 0.76 +1.6
247,558 - EX31_RS12860 0.76 -0.4
247,558 - EX31_RS12860 0.76 -0.8
247,558 - EX31_RS12860 0.76 +1.4
247,558 - EX31_RS12860 0.76 +0.3
247,558 - EX31_RS12860 0.76 +0.7
247,558 - EX31_RS12860 0.76 -0.3
247,632 + EX31_RS12860 0.83 +0.3
247,632 + EX31_RS12860 0.83 +0.8
247,679 + EX31_RS12860 0.88 -0.1
247,679 + EX31_RS12860 0.88 -0.5
247,679 + EX31_RS12860 0.88 +0.3
247,680 - EX31_RS12860 0.88 -0.0
247,724 + +0.0
247,724 + +0.6
247,724 + -1.0
247,724 + +0.4
247,724 + +1.2
247,724 + -0.3
247,725 - +0.9
247,725 - +1.0
247,725 - -1.0
247,725 - +0.2
247,728 + -0.2
247,729 - +0.1
247,729 - -0.9
247,729 - -1.3
247,757 - -1.5
247,770 + -0.1
247,770 + +1.1
247,770 + +0.3
247,777 + -0.9
247,777 + -1.8
247,777 + -0.9
247,777 + -0.2
247,777 + -0.1
247,777 + +0.5
247,777 + +1.2
247,778 - +1.0
247,778 - -1.0
247,800 - -0.3
247,811 + -0.6
247,834 + -0.4
247,861 - +0.5
247,866 + +2.8
247,866 + +1.3
247,867 - +0.3
247,872 - -0.4
247,872 - -0.0
247,915 + EX31_RS12865 0.19 +1.2
247,915 + EX31_RS12865 0.19 +0.3
247,915 + EX31_RS12865 0.19 +0.6
247,915 + EX31_RS12865 0.19 +0.1
247,915 + EX31_RS12865 0.19 +1.3
247,915 + EX31_RS12865 0.19 -1.2
247,915 + EX31_RS12865 0.19 +0.3
247,915 + EX31_RS12865 0.19 +0.8
247,916 - EX31_RS12865 0.20 +0.9
247,916 - EX31_RS12865 0.20 +0.9
247,916 - EX31_RS12865 0.20 -0.9
247,928 + EX31_RS12865 0.24 -0.3
247,928 + EX31_RS12865 0.24 +0.9
247,928 + EX31_RS12865 0.24 -0.0
247,928 + EX31_RS12865 0.24 +1.8
247,928 + EX31_RS12865 0.24 -0.5
247,928 + EX31_RS12865 0.24 +0.7
247,928 + EX31_RS12865 0.24 -2.1
247,928 + EX31_RS12865 0.24 +0.2
247,928 + EX31_RS12865 0.24 +0.5
247,928 + EX31_RS12865 0.24 -1.2
247,928 + EX31_RS12865 0.24 +0.3
247,928 + EX31_RS12865 0.24 +0.3
247,928 + EX31_RS12865 0.24 -1.7
247,928 + EX31_RS12865 0.24 -0.2
247,928 + EX31_RS12865 0.24 +0.5
247,929 - EX31_RS12865 0.24 +1.2
247,929 - EX31_RS12865 0.24 +1.1
247,929 - EX31_RS12865 0.24 +0.9
247,929 - EX31_RS12865 0.24 +0.5
247,929 - EX31_RS12865 0.24 +1.1
247,929 - EX31_RS12865 0.24 -0.3
247,929 - EX31_RS12865 0.24 -0.9
247,929 - EX31_RS12865 0.24 -0.7
247,929 - EX31_RS12865 0.24 -0.3
247,929 - EX31_RS12865 0.24 +0.2
247,932 + EX31_RS12865 0.25 +1.6
247,932 + EX31_RS12865 0.25 +2.5
247,932 + EX31_RS12865 0.25 -1.0
247,932 + EX31_RS12865 0.25 -0.8
247,932 + EX31_RS12865 0.25 +1.3
247,932 + EX31_RS12865 0.25 +1.7
247,933 - EX31_RS12865 0.26 +0.3
247,933 - EX31_RS12865 0.26 +0.4
247,933 - EX31_RS12865 0.26 +1.9
247,933 - EX31_RS12865 0.26 +0.3
247,933 - EX31_RS12865 0.26 +1.1
248,014 + EX31_RS12865 0.54 -0.1
248,014 + EX31_RS12865 0.54 +0.3
248,014 + EX31_RS12865 0.54 -1.3
248,014 + EX31_RS12865 0.54 +0.7
248,014 + EX31_RS12865 0.54 +1.0
248,014 + EX31_RS12865 0.54 -1.0
248,014 + EX31_RS12865 0.54 -0.2
248,015 - EX31_RS12865 0.54 -1.4
248,015 - EX31_RS12865 0.54 +0.1
248,015 - EX31_RS12865 0.54 +2.2
248,015 - EX31_RS12865 0.54 -0.3
248,017 + EX31_RS12865 0.55 +1.6
248,017 + EX31_RS12865 0.55 +0.5
248,018 - EX31_RS12865 0.55 +0.2
248,018 - EX31_RS12865 0.55 +0.1
248,018 - EX31_RS12865 0.55 +0.2
248,018 - EX31_RS12865 0.55 +0.0
248,018 - EX31_RS12865 0.55 -0.5
248,020 + EX31_RS12865 0.56 +1.7
248,021 - EX31_RS12865 0.56 +0.5
248,034 - EX31_RS12865 0.61 +0.2
248,034 - EX31_RS12865 0.61 +0.4
248,034 - EX31_RS12865 0.61 -0.1
248,034 - EX31_RS12865 0.61 +0.1
248,034 - EX31_RS12865 0.61 +0.5
248,039 + EX31_RS12865 0.62 +1.8
248,072 - EX31_RS12865 0.74 +0.9

Or see this region's nucleotide sequence