Strain Fitness in Rahnella sp. WP5 around EX31_RS09980

Experiment: Ammonium chloride (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09975 and EX31_RS09980 overlap by 1 nucleotidesEX31_RS09980 and EX31_RS09985 are separated by 215 nucleotidesEX31_RS09985 and EX31_RS09990 are separated by 71 nucleotides EX31_RS09975: EX31_RS09975 - tryptophan synthase subunit beta, at 204,564 to 205,754 _RS09975 EX31_RS09980: EX31_RS09980 - tryptophan synthase subunit alpha, at 205,754 to 206,560 _RS09980 EX31_RS09985: EX31_RS09985 - BON domain-containing protein, at 206,776 to 207,090 _RS09985 EX31_RS09990: EX31_RS09990 - outer membrane protein OmpW, at 207,162 to 207,794 _RS09990 Position (kb) 205 206 207Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 204.780 kb on + strand, within EX31_RS09975at 204.780 kb on + strand, within EX31_RS09975at 204.780 kb on + strand, within EX31_RS09975at 204.781 kb on - strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.958 kb on - strand, within EX31_RS09975at 204.958 kb on - strand, within EX31_RS09975at 204.958 kb on - strand, within EX31_RS09975at 205.040 kb on + strand, within EX31_RS09975at 205.040 kb on + strand, within EX31_RS09975at 205.070 kb on + strand, within EX31_RS09975at 205.101 kb on + strand, within EX31_RS09975at 205.116 kb on + strand, within EX31_RS09975at 205.116 kb on + strand, within EX31_RS09975at 205.179 kb on - strand, within EX31_RS09975at 205.179 kb on - strand, within EX31_RS09975at 205.277 kb on + strand, within EX31_RS09975at 205.391 kb on + strand, within EX31_RS09975at 205.395 kb on + strand, within EX31_RS09975at 205.395 kb on + strand, within EX31_RS09975at 205.395 kb on + strand, within EX31_RS09975at 205.396 kb on - strand, within EX31_RS09975at 205.530 kb on + strand, within EX31_RS09975at 205.530 kb on + strand, within EX31_RS09975at 205.531 kb on - strand, within EX31_RS09975at 205.753 kb on - strandat 205.763 kb on + strandat 205.773 kb on + strandat 205.774 kb on - strandat 206.057 kb on + strand, within EX31_RS09980at 206.057 kb on + strand, within EX31_RS09980at 206.057 kb on + strand, within EX31_RS09980at 206.057 kb on + strand, within EX31_RS09980at 206.058 kb on - strand, within EX31_RS09980at 206.058 kb on - strand, within EX31_RS09980at 206.096 kb on + strand, within EX31_RS09980at 206.096 kb on + strand, within EX31_RS09980at 206.097 kb on - strand, within EX31_RS09980at 206.203 kb on + strand, within EX31_RS09980at 206.203 kb on + strand, within EX31_RS09980at 206.203 kb on + strand, within EX31_RS09980at 206.270 kb on + strand, within EX31_RS09980at 206.276 kb on + strand, within EX31_RS09980at 206.276 kb on + strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.347 kb on + strand, within EX31_RS09980at 206.353 kb on - strand, within EX31_RS09980at 206.360 kb on + strand, within EX31_RS09980at 206.361 kb on - strand, within EX31_RS09980at 206.446 kb on + strand, within EX31_RS09980at 206.446 kb on + strand, within EX31_RS09980at 206.470 kb on + strand, within EX31_RS09980at 206.470 kb on + strand, within EX31_RS09980at 206.558 kb on + strandat 206.647 kb on + strandat 206.648 kb on - strandat 206.650 kb on + strandat 206.662 kb on + strandat 206.696 kb on + strandat 206.696 kb on + strandat 206.696 kb on + strandat 206.697 kb on - strandat 206.697 kb on - strandat 206.728 kb on - strandat 206.878 kb on + strand, within EX31_RS09985at 206.879 kb on - strand, within EX31_RS09985at 206.909 kb on + strand, within EX31_RS09985at 206.931 kb on + strand, within EX31_RS09985at 206.931 kb on + strand, within EX31_RS09985at 206.931 kb on + strand, within EX31_RS09985at 206.932 kb on - strand, within EX31_RS09985at 206.932 kb on - strand, within EX31_RS09985at 206.932 kb on - strand, within EX31_RS09985at 206.940 kb on + strand, within EX31_RS09985at 206.940 kb on + strand, within EX31_RS09985at 206.941 kb on - strand, within EX31_RS09985at 206.941 kb on - strand, within EX31_RS09985at 206.970 kb on + strand, within EX31_RS09985at 207.075 kb on + strandat 207.100 kb on + strandat 207.101 kb on - strandat 207.101 kb on - strandat 207.189 kb on - strandat 207.189 kb on - strandat 207.189 kb on - strandat 207.189 kb on - strandat 207.189 kb on - strandat 207.314 kb on - strand, within EX31_RS09990at 207.314 kb on - strand, within EX31_RS09990at 207.409 kb on + strand, within EX31_RS09990at 207.410 kb on - strand, within EX31_RS09990at 207.421 kb on + strand, within EX31_RS09990at 207.422 kb on - strand, within EX31_RS09990at 207.422 kb on - strand, within EX31_RS09990at 207.422 kb on - strand, within EX31_RS09990at 207.422 kb on - strand, within EX31_RS09990at 207.429 kb on - strand, within EX31_RS09990at 207.433 kb on - strand, within EX31_RS09990at 207.433 kb on - strand, within EX31_RS09990at 207.475 kb on + strand, within EX31_RS09990at 207.475 kb on + strand, within EX31_RS09990at 207.476 kb on - strand, within EX31_RS09990at 207.476 kb on - strand, within EX31_RS09990at 207.476 kb on - strand, within EX31_RS09990

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking
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204,780 + EX31_RS09975 0.18 -1.9
204,780 + EX31_RS09975 0.18 -1.3
204,780 + EX31_RS09975 0.18 -0.9
204,781 - EX31_RS09975 0.18 +0.3
204,957 + EX31_RS09975 0.33 -1.2
204,957 + EX31_RS09975 0.33 -4.1
204,957 + EX31_RS09975 0.33 -0.7
204,957 + EX31_RS09975 0.33 -0.4
204,957 + EX31_RS09975 0.33 -1.4
204,957 + EX31_RS09975 0.33 -3.2
204,957 + EX31_RS09975 0.33 -2.0
204,958 - EX31_RS09975 0.33 -1.8
204,958 - EX31_RS09975 0.33 -1.4
204,958 - EX31_RS09975 0.33 -1.4
205,040 + EX31_RS09975 0.40 -1.7
205,040 + EX31_RS09975 0.40 -2.8
205,070 + EX31_RS09975 0.42 -2.0
205,101 + EX31_RS09975 0.45 -2.5
205,116 + EX31_RS09975 0.46 -1.1
205,116 + EX31_RS09975 0.46 -2.6
205,179 - EX31_RS09975 0.52 -1.3
205,179 - EX31_RS09975 0.52 -1.3
205,277 + EX31_RS09975 0.60 -2.5
205,391 + EX31_RS09975 0.69 -2.2
205,395 + EX31_RS09975 0.70 +0.3
205,395 + EX31_RS09975 0.70 -1.2
205,395 + EX31_RS09975 0.70 -1.3
205,396 - EX31_RS09975 0.70 -3.2
205,530 + EX31_RS09975 0.81 -3.3
205,530 + EX31_RS09975 0.81 -2.3
205,531 - EX31_RS09975 0.81 -2.7
205,753 - -1.4
205,763 + -2.5
205,773 + -2.2
205,774 - -1.5
206,057 + EX31_RS09980 0.38 -3.2
206,057 + EX31_RS09980 0.38 -2.7
206,057 + EX31_RS09980 0.38 +0.9
206,057 + EX31_RS09980 0.38 -2.7
206,058 - EX31_RS09980 0.38 -2.7
206,058 - EX31_RS09980 0.38 -2.4
206,096 + EX31_RS09980 0.42 -1.4
206,096 + EX31_RS09980 0.42 -1.1
206,097 - EX31_RS09980 0.43 -1.9
206,203 + EX31_RS09980 0.56 -1.0
206,203 + EX31_RS09980 0.56 -1.4
206,203 + EX31_RS09980 0.56 -1.1
206,270 + EX31_RS09980 0.64 -1.8
206,276 + EX31_RS09980 0.65 -3.4
206,276 + EX31_RS09980 0.65 -1.3
206,277 - EX31_RS09980 0.65 -1.9
206,277 - EX31_RS09980 0.65 +0.3
206,277 - EX31_RS09980 0.65 -0.4
206,277 - EX31_RS09980 0.65 -2.8
206,347 + EX31_RS09980 0.73 -0.9
206,353 - EX31_RS09980 0.74 -2.9
206,360 + EX31_RS09980 0.75 -1.3
206,361 - EX31_RS09980 0.75 -3.2
206,446 + EX31_RS09980 0.86 -1.8
206,446 + EX31_RS09980 0.86 -2.0
206,470 + EX31_RS09980 0.89 -1.7
206,470 + EX31_RS09980 0.89 +1.9
206,558 + +0.6
206,647 + -1.1
206,648 - -0.3
206,650 + -0.4
206,662 + -1.9
206,696 + -1.8
206,696 + -0.8
206,696 + +1.9
206,697 - +0.5
206,697 - -1.0
206,728 - +0.3
206,878 + EX31_RS09985 0.32 +0.3
206,879 - EX31_RS09985 0.33 +1.6
206,909 + EX31_RS09985 0.42 -1.3
206,931 + EX31_RS09985 0.49 -0.7
206,931 + EX31_RS09985 0.49 -0.1
206,931 + EX31_RS09985 0.49 +0.5
206,932 - EX31_RS09985 0.50 +0.9
206,932 - EX31_RS09985 0.50 +0.3
206,932 - EX31_RS09985 0.50 +0.7
206,940 + EX31_RS09985 0.52 +0.9
206,940 + EX31_RS09985 0.52 +1.2
206,941 - EX31_RS09985 0.52 -1.1
206,941 - EX31_RS09985 0.52 +0.7
206,970 + EX31_RS09985 0.62 +0.6
207,075 + +0.8
207,100 + -0.5
207,101 - -0.3
207,101 - +0.8
207,189 - -1.3
207,189 - +0.4
207,189 - +1.3
207,189 - -0.3
207,189 - +0.9
207,314 - EX31_RS09990 0.24 +1.3
207,314 - EX31_RS09990 0.24 -1.7
207,409 + EX31_RS09990 0.39 +0.4
207,410 - EX31_RS09990 0.39 -0.4
207,421 + EX31_RS09990 0.41 -0.4
207,422 - EX31_RS09990 0.41 +0.0
207,422 - EX31_RS09990 0.41 -0.1
207,422 - EX31_RS09990 0.41 -0.7
207,422 - EX31_RS09990 0.41 -1.1
207,429 - EX31_RS09990 0.42 -1.1
207,433 - EX31_RS09990 0.43 -0.5
207,433 - EX31_RS09990 0.43 -0.1
207,475 + EX31_RS09990 0.49 +1.6
207,475 + EX31_RS09990 0.49 +0.2
207,476 - EX31_RS09990 0.50 +1.2
207,476 - EX31_RS09990 0.50 -0.5
207,476 - EX31_RS09990 0.50 -0.0

Or see this region's nucleotide sequence