Strain Fitness in Rahnella sp. WP5 around EX31_RS09930

Experiment: Ammonium chloride (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09920 and EX31_RS09925 are separated by 25 nucleotidesEX31_RS09925 and EX31_RS09930 are separated by 16 nucleotidesEX31_RS09930 and EX31_RS09935 are separated by 25 nucleotidesEX31_RS09935 and EX31_RS09940 are separated by 148 nucleotides EX31_RS09920: EX31_RS09920 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 193,234 to 194,277 _RS09920 EX31_RS09925: EX31_RS09925 - alpha-ribazole phosphatase, at 194,303 to 194,899 _RS09925 EX31_RS09930: EX31_RS09930 - adenosylcobinamide-GDP ribazoletransferase, at 194,916 to 195,668 _RS09930 EX31_RS09935: EX31_RS09935 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 195,694 to 196,248 _RS09935 EX31_RS09940: EX31_RS09940 - 23S rRNA pseudouridine(2605) synthase RluB, at 196,397 to 197,716 _RS09940 Position (kb) 194 195 196Strain fitness (log2 ratio) -2 -1 0 1 2at 194.309 kb on - strandat 194.321 kb on - strandat 194.381 kb on - strand, within EX31_RS09925at 194.381 kb on - strand, within EX31_RS09925at 194.462 kb on + strand, within EX31_RS09925at 194.536 kb on + strand, within EX31_RS09925at 194.738 kb on - strand, within EX31_RS09925at 194.926 kb on - strandat 195.051 kb on + strand, within EX31_RS09930at 195.069 kb on + strand, within EX31_RS09930at 195.108 kb on + strand, within EX31_RS09930at 195.109 kb on - strand, within EX31_RS09930at 195.109 kb on - strand, within EX31_RS09930at 195.116 kb on + strand, within EX31_RS09930at 195.116 kb on + strand, within EX31_RS09930at 195.140 kb on + strand, within EX31_RS09930at 195.190 kb on + strand, within EX31_RS09930at 195.190 kb on + strand, within EX31_RS09930at 195.190 kb on + strand, within EX31_RS09930at 195.191 kb on - strand, within EX31_RS09930at 195.237 kb on - strand, within EX31_RS09930at 195.278 kb on - strand, within EX31_RS09930at 195.353 kb on + strand, within EX31_RS09930at 195.365 kb on + strand, within EX31_RS09930at 195.391 kb on - strand, within EX31_RS09930at 195.391 kb on - strand, within EX31_RS09930at 195.427 kb on - strand, within EX31_RS09930at 195.427 kb on - strand, within EX31_RS09930at 195.427 kb on - strand, within EX31_RS09930at 195.444 kb on - strand, within EX31_RS09930at 195.446 kb on + strand, within EX31_RS09930at 195.446 kb on + strand, within EX31_RS09930at 195.447 kb on - strand, within EX31_RS09930at 195.447 kb on - strand, within EX31_RS09930at 195.447 kb on - strand, within EX31_RS09930at 195.447 kb on - strand, within EX31_RS09930at 195.574 kb on + strand, within EX31_RS09930at 195.574 kb on + strand, within EX31_RS09930at 195.574 kb on + strand, within EX31_RS09930at 195.575 kb on - strand, within EX31_RS09930at 195.575 kb on - strand, within EX31_RS09930at 195.575 kb on - strand, within EX31_RS09930at 195.661 kb on - strandat 195.671 kb on + strandat 195.672 kb on - strandat 195.672 kb on - strandat 195.695 kb on + strandat 195.696 kb on - strandat 195.741 kb on - strandat 195.741 kb on - strandat 195.741 kb on - strandat 195.790 kb on - strand, within EX31_RS09935at 195.926 kb on - strand, within EX31_RS09935at 196.014 kb on + strand, within EX31_RS09935at 196.080 kb on + strand, within EX31_RS09935at 196.081 kb on - strand, within EX31_RS09935at 196.143 kb on + strand, within EX31_RS09935at 196.143 kb on + strand, within EX31_RS09935at 196.144 kb on - strand, within EX31_RS09935at 196.148 kb on - strand, within EX31_RS09935at 196.163 kb on + strand, within EX31_RS09935at 196.163 kb on + strand, within EX31_RS09935at 196.164 kb on - strand, within EX31_RS09935at 196.164 kb on - strand, within EX31_RS09935at 196.164 kb on - strand, within EX31_RS09935at 196.164 kb on - strand, within EX31_RS09935at 196.164 kb on - strand, within EX31_RS09935at 196.216 kb on - strandat 196.240 kb on + strandat 196.249 kb on - strandat 196.267 kb on + strandat 196.267 kb on + strandat 196.270 kb on + strandat 196.280 kb on + strandat 196.280 kb on + strandat 196.312 kb on + strandat 196.369 kb on + strandat 196.370 kb on - strandat 196.448 kb on - strandat 196.484 kb on + strandat 196.558 kb on - strand, within EX31_RS09940at 196.558 kb on - strand, within EX31_RS09940at 196.558 kb on - strand, within EX31_RS09940at 196.558 kb on - strand, within EX31_RS09940at 196.586 kb on - strand, within EX31_RS09940at 196.588 kb on - strand, within EX31_RS09940

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking
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194,309 - -0.7
194,321 - +0.3
194,381 - EX31_RS09925 0.13 +0.6
194,381 - EX31_RS09925 0.13 -1.5
194,462 + EX31_RS09925 0.27 +0.3
194,536 + EX31_RS09925 0.39 +0.9
194,738 - EX31_RS09925 0.73 -0.0
194,926 - -1.3
195,051 + EX31_RS09930 0.18 -0.1
195,069 + EX31_RS09930 0.20 +0.9
195,108 + EX31_RS09930 0.25 -0.7
195,109 - EX31_RS09930 0.26 +0.4
195,109 - EX31_RS09930 0.26 -0.4
195,116 + EX31_RS09930 0.27 -1.7
195,116 + EX31_RS09930 0.27 -0.2
195,140 + EX31_RS09930 0.30 +0.1
195,190 + EX31_RS09930 0.36 +1.9
195,190 + EX31_RS09930 0.36 -0.8
195,190 + EX31_RS09930 0.36 +0.9
195,191 - EX31_RS09930 0.37 -0.1
195,237 - EX31_RS09930 0.43 -0.7
195,278 - EX31_RS09930 0.48 +0.2
195,353 + EX31_RS09930 0.58 +0.1
195,365 + EX31_RS09930 0.60 -0.1
195,391 - EX31_RS09930 0.63 +1.9
195,391 - EX31_RS09930 0.63 -0.3
195,427 - EX31_RS09930 0.68 +1.3
195,427 - EX31_RS09930 0.68 +0.2
195,427 - EX31_RS09930 0.68 +1.4
195,444 - EX31_RS09930 0.70 -0.4
195,446 + EX31_RS09930 0.70 +0.2
195,446 + EX31_RS09930 0.70 +0.8
195,447 - EX31_RS09930 0.71 +0.9
195,447 - EX31_RS09930 0.71 -1.0
195,447 - EX31_RS09930 0.71 -0.1
195,447 - EX31_RS09930 0.71 -0.3
195,574 + EX31_RS09930 0.87 -0.4
195,574 + EX31_RS09930 0.87 -1.1
195,574 + EX31_RS09930 0.87 -0.9
195,575 - EX31_RS09930 0.88 -0.6
195,575 - EX31_RS09930 0.88 -0.3
195,575 - EX31_RS09930 0.88 -1.1
195,661 - +1.6
195,671 + -1.5
195,672 - +1.0
195,672 - -0.1
195,695 + -1.3
195,696 - +0.7
195,741 - -0.8
195,741 - +1.0
195,741 - -1.8
195,790 - EX31_RS09935 0.17 -1.0
195,926 - EX31_RS09935 0.42 +0.7
196,014 + EX31_RS09935 0.58 -0.7
196,080 + EX31_RS09935 0.70 +0.5
196,081 - EX31_RS09935 0.70 +1.9
196,143 + EX31_RS09935 0.81 +1.0
196,143 + EX31_RS09935 0.81 -1.9
196,144 - EX31_RS09935 0.81 +0.1
196,148 - EX31_RS09935 0.82 +1.2
196,163 + EX31_RS09935 0.85 +0.3
196,163 + EX31_RS09935 0.85 +0.9
196,164 - EX31_RS09935 0.85 -1.8
196,164 - EX31_RS09935 0.85 +0.6
196,164 - EX31_RS09935 0.85 +0.3
196,164 - EX31_RS09935 0.85 -0.4
196,164 - EX31_RS09935 0.85 +0.6
196,216 - -1.4
196,240 + -0.3
196,249 - +0.8
196,267 + +0.8
196,267 + +0.8
196,270 + +0.5
196,280 + -0.4
196,280 + +0.3
196,312 + -1.7
196,369 + -1.0
196,370 - -0.4
196,448 - +0.1
196,484 + +0.3
196,558 - EX31_RS09940 0.12 -0.0
196,558 - EX31_RS09940 0.12 +0.9
196,558 - EX31_RS09940 0.12 +1.5
196,558 - EX31_RS09940 0.12 +0.3
196,586 - EX31_RS09940 0.14 +1.2
196,588 - EX31_RS09940 0.14 +0.3

Or see this region's nucleotide sequence