Strain Fitness in Rahnella sp. WP5 around EX31_RS07405

Experiment: Ammonium chloride (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07395 and EX31_RS07400 overlap by 4 nucleotidesEX31_RS07400 and EX31_RS07405 are separated by 161 nucleotidesEX31_RS07405 and EX31_RS07410 are separated by 343 nucleotides EX31_RS07395: EX31_RS07395 - two-component sensor histidine kinase, at 284,300 to 285,484 _RS07395 EX31_RS07400: EX31_RS07400 - response regulator transcription factor, at 285,481 to 286,179 _RS07400 EX31_RS07405: EX31_RS07405 - beta-(1,2)-glucan biosynthesis protein, at 286,341 to 294,890 _RS07405 EX31_RS07410: EX31_RS07410 - NAD(P)H-dependent oxidoreductase, at 295,234 to 295,872 _RS07410 Position (kb) 286 287 288 289 290 291 292 293 294 295Strain fitness (log2 ratio) -2 -1 0 1 2 3at 285.343 kb on + strand, within EX31_RS07395at 285.343 kb on + strand, within EX31_RS07395at 285.343 kb on + strand, within EX31_RS07395at 285.344 kb on - strand, within EX31_RS07395at 285.344 kb on - strand, within EX31_RS07395at 285.344 kb on - strand, within EX31_RS07395at 285.344 kb on - strand, within EX31_RS07395at 285.524 kb on - strandat 285.569 kb on + strand, within EX31_RS07400at 285.570 kb on - strand, within EX31_RS07400at 285.570 kb on - strand, within EX31_RS07400at 285.570 kb on - strand, within EX31_RS07400at 285.570 kb on - strand, within EX31_RS07400at 285.667 kb on + strand, within EX31_RS07400at 285.680 kb on - strand, within EX31_RS07400at 285.711 kb on - strand, within EX31_RS07400at 285.798 kb on + strand, within EX31_RS07400at 285.798 kb on + strand, within EX31_RS07400at 285.799 kb on - strand, within EX31_RS07400at 285.799 kb on - strand, within EX31_RS07400at 285.866 kb on + strand, within EX31_RS07400at 285.867 kb on - strand, within EX31_RS07400at 285.867 kb on - strand, within EX31_RS07400at 285.867 kb on - strand, within EX31_RS07400at 285.867 kb on - strand, within EX31_RS07400at 285.867 kb on - strand, within EX31_RS07400at 285.881 kb on + strand, within EX31_RS07400at 285.881 kb on + strand, within EX31_RS07400at 285.881 kb on + strand, within EX31_RS07400at 285.882 kb on - strand, within EX31_RS07400at 285.882 kb on - strand, within EX31_RS07400at 285.882 kb on - strand, within EX31_RS07400at 285.882 kb on - strand, within EX31_RS07400at 285.882 kb on - strand, within EX31_RS07400at 285.945 kb on + strand, within EX31_RS07400at 285.946 kb on - strand, within EX31_RS07400at 286.090 kb on + strand, within EX31_RS07400at 286.091 kb on - strand, within EX31_RS07400at 286.091 kb on - strand, within EX31_RS07400at 286.091 kb on - strand, within EX31_RS07400at 286.156 kb on - strandat 286.205 kb on - strandat 286.220 kb on + strandat 286.220 kb on + strandat 286.280 kb on + strandat 286.281 kb on - strandat 286.281 kb on - strandat 286.281 kb on - strandat 286.281 kb on - strandat 286.286 kb on + strandat 286.287 kb on - strandat 286.287 kb on - strandat 286.287 kb on - strandat 286.287 kb on - strandat 286.287 kb on - strandat 286.322 kb on - strandat 286.508 kb on - strandat 286.508 kb on - strandat 286.508 kb on - strandat 286.577 kb on + strandat 286.578 kb on - strandat 286.578 kb on - strandat 286.578 kb on - strandat 286.609 kb on + strandat 286.634 kb on - strandat 286.679 kb on + strandat 286.696 kb on + strandat 286.697 kb on - strandat 286.697 kb on - strandat 286.697 kb on - strandat 286.697 kb on - strandat 286.697 kb on - strandat 286.712 kb on - strandat 286.835 kb on + strandat 286.837 kb on + strandat 286.880 kb on + strandat 286.880 kb on + strandat 286.881 kb on - strandat 287.044 kb on - strandat 287.044 kb on - strandat 287.044 kb on - strandat 287.064 kb on - strandat 287.237 kb on - strand, within EX31_RS07405at 287.423 kb on - strand, within EX31_RS07405at 287.512 kb on + strand, within EX31_RS07405at 287.512 kb on + strand, within EX31_RS07405at 287.513 kb on - strand, within EX31_RS07405at 287.513 kb on - strand, within EX31_RS07405at 287.513 kb on - strand, within EX31_RS07405at 287.634 kb on + strand, within EX31_RS07405at 287.635 kb on - strand, within EX31_RS07405at 287.732 kb on - strand, within EX31_RS07405at 287.732 kb on - strand, within EX31_RS07405at 287.732 kb on - strand, within EX31_RS07405at 288.182 kb on - strand, within EX31_RS07405at 288.182 kb on - strand, within EX31_RS07405at 288.182 kb on - strand, within EX31_RS07405at 288.182 kb on - strand, within EX31_RS07405at 288.239 kb on + strand, within EX31_RS07405at 288.261 kb on + strand, within EX31_RS07405at 288.261 kb on + strand, within EX31_RS07405at 288.262 kb on - strand, within EX31_RS07405at 288.342 kb on - strand, within EX31_RS07405at 288.372 kb on + strand, within EX31_RS07405at 288.373 kb on - strand, within EX31_RS07405at 288.373 kb on - strand, within EX31_RS07405at 288.373 kb on - strand, within EX31_RS07405at 288.373 kb on - strand, within EX31_RS07405at 288.373 kb on - strand, within EX31_RS07405at 288.407 kb on + strand, within EX31_RS07405at 288.422 kb on + strand, within EX31_RS07405at 288.422 kb on + strand, within EX31_RS07405at 288.423 kb on - strand, within EX31_RS07405at 288.423 kb on - strand, within EX31_RS07405at 288.518 kb on - strand, within EX31_RS07405at 288.599 kb on + strand, within EX31_RS07405at 288.599 kb on + strand, within EX31_RS07405at 288.600 kb on - strand, within EX31_RS07405at 288.850 kb on - strand, within EX31_RS07405at 288.850 kb on - strand, within EX31_RS07405at 289.161 kb on + strand, within EX31_RS07405at 289.161 kb on + strand, within EX31_RS07405at 289.289 kb on + strand, within EX31_RS07405at 289.319 kb on + strand, within EX31_RS07405at 289.320 kb on - strand, within EX31_RS07405at 289.379 kb on + strand, within EX31_RS07405at 289.379 kb on + strand, within EX31_RS07405at 289.380 kb on - strand, within EX31_RS07405at 289.380 kb on - strand, within EX31_RS07405at 289.380 kb on - strand, within EX31_RS07405at 289.744 kb on - strand, within EX31_RS07405at 289.744 kb on - strand, within EX31_RS07405at 289.755 kb on - strand, within EX31_RS07405at 289.810 kb on + strand, within EX31_RS07405at 289.811 kb on - strand, within EX31_RS07405at 289.848 kb on - strand, within EX31_RS07405at 289.848 kb on - strand, within EX31_RS07405at 289.972 kb on + strand, within EX31_RS07405at 289.972 kb on + strand, within EX31_RS07405at 289.989 kb on - strand, within EX31_RS07405at 290.006 kb on + strand, within EX31_RS07405at 290.007 kb on - strand, within EX31_RS07405at 290.007 kb on - strand, within EX31_RS07405at 290.009 kb on + strand, within EX31_RS07405at 290.010 kb on - strand, within EX31_RS07405at 290.240 kb on + strand, within EX31_RS07405at 290.241 kb on - strand, within EX31_RS07405at 290.276 kb on - strand, within EX31_RS07405at 290.441 kb on - strand, within EX31_RS07405at 290.441 kb on - strand, within EX31_RS07405at 290.473 kb on + strand, within EX31_RS07405at 290.473 kb on + strand, within EX31_RS07405at 290.489 kb on - strand, within EX31_RS07405at 290.498 kb on - strand, within EX31_RS07405at 290.621 kb on + strand, within EX31_RS07405at 290.726 kb on + strand, within EX31_RS07405at 290.936 kb on - strand, within EX31_RS07405at 291.333 kb on - strand, within EX31_RS07405at 291.333 kb on - strand, within EX31_RS07405at 291.335 kb on + strand, within EX31_RS07405at 291.336 kb on - strand, within EX31_RS07405at 291.336 kb on - strand, within EX31_RS07405at 291.386 kb on + strand, within EX31_RS07405at 291.554 kb on - strand, within EX31_RS07405at 291.589 kb on + strand, within EX31_RS07405at 291.597 kb on - strand, within EX31_RS07405at 291.653 kb on + strand, within EX31_RS07405at 292.007 kb on + strand, within EX31_RS07405at 292.007 kb on + strand, within EX31_RS07405at 292.008 kb on - strand, within EX31_RS07405at 292.052 kb on - strand, within EX31_RS07405at 292.164 kb on + strand, within EX31_RS07405at 292.165 kb on - strand, within EX31_RS07405at 292.171 kb on + strand, within EX31_RS07405at 292.332 kb on - strand, within EX31_RS07405at 292.577 kb on - strand, within EX31_RS07405at 292.597 kb on + strand, within EX31_RS07405at 292.597 kb on + strand, within EX31_RS07405at 292.597 kb on + strand, within EX31_RS07405at 292.598 kb on - strand, within EX31_RS07405at 292.598 kb on - strand, within EX31_RS07405at 292.633 kb on + strand, within EX31_RS07405at 292.634 kb on - strand, within EX31_RS07405at 292.634 kb on - strand, within EX31_RS07405at 292.706 kb on + strand, within EX31_RS07405at 292.706 kb on + strand, within EX31_RS07405at 292.707 kb on - strand, within EX31_RS07405at 292.763 kb on - strand, within EX31_RS07405at 292.763 kb on - strand, within EX31_RS07405at 292.767 kb on - strand, within EX31_RS07405at 292.883 kb on - strand, within EX31_RS07405at 293.008 kb on + strand, within EX31_RS07405at 293.008 kb on + strand, within EX31_RS07405at 293.008 kb on + strand, within EX31_RS07405at 293.120 kb on - strand, within EX31_RS07405at 293.174 kb on + strand, within EX31_RS07405at 293.175 kb on - strand, within EX31_RS07405at 293.175 kb on - strand, within EX31_RS07405at 293.198 kb on + strand, within EX31_RS07405at 293.199 kb on - strand, within EX31_RS07405at 293.200 kb on + strand, within EX31_RS07405at 293.200 kb on + strand, within EX31_RS07405at 293.542 kb on - strand, within EX31_RS07405at 293.585 kb on - strand, within EX31_RS07405at 293.586 kb on + strand, within EX31_RS07405at 293.587 kb on - strand, within EX31_RS07405at 293.587 kb on - strand, within EX31_RS07405at 293.587 kb on - strand, within EX31_RS07405at 293.587 kb on - strand, within EX31_RS07405at 293.740 kb on + strand, within EX31_RS07405at 293.740 kb on + strand, within EX31_RS07405at 293.740 kb on + strand, within EX31_RS07405at 293.741 kb on - strand, within EX31_RS07405at 293.743 kb on + strand, within EX31_RS07405at 293.863 kb on + strand, within EX31_RS07405at 294.251 kb on + strandat 294.364 kb on - strandat 294.397 kb on + strandat 294.475 kb on + strandat 294.578 kb on - strandat 294.592 kb on - strandat 294.688 kb on - strandat 294.688 kb on - strandat 294.839 kb on + strandat 294.873 kb on - strandat 294.898 kb on + strandat 294.899 kb on - strandat 295.012 kb on + strandat 295.020 kb on + strandat 295.020 kb on + strandat 295.021 kb on - strandat 295.021 kb on - strandat 295.024 kb on - strandat 295.032 kb on + strandat 295.116 kb on + strandat 295.133 kb on - strandat 295.173 kb on - strandat 295.182 kb on + strandat 295.183 kb on - strandat 295.245 kb on - strandat 295.323 kb on + strand, within EX31_RS07410at 295.323 kb on + strand, within EX31_RS07410at 295.618 kb on + strand, within EX31_RS07410at 295.642 kb on + strand, within EX31_RS07410at 295.643 kb on - strand, within EX31_RS07410at 295.643 kb on - strand, within EX31_RS07410at 295.870 kb on + strandat 295.870 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking
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285,343 + EX31_RS07395 0.88 +0.4
285,343 + EX31_RS07395 0.88 +0.4
285,343 + EX31_RS07395 0.88 +0.7
285,344 - EX31_RS07395 0.88 +1.7
285,344 - EX31_RS07395 0.88 +0.4
285,344 - EX31_RS07395 0.88 +0.8
285,344 - EX31_RS07395 0.88 +1.5
285,524 - +0.4
285,569 + EX31_RS07400 0.13 +2.0
285,570 - EX31_RS07400 0.13 -1.1
285,570 - EX31_RS07400 0.13 +1.3
285,570 - EX31_RS07400 0.13 +0.5
285,570 - EX31_RS07400 0.13 -0.3
285,667 + EX31_RS07400 0.27 +0.6
285,680 - EX31_RS07400 0.28 +1.4
285,711 - EX31_RS07400 0.33 -0.5
285,798 + EX31_RS07400 0.45 +1.3
285,798 + EX31_RS07400 0.45 +0.1
285,799 - EX31_RS07400 0.45 +0.3
285,799 - EX31_RS07400 0.45 +0.2
285,866 + EX31_RS07400 0.55 -1.2
285,867 - EX31_RS07400 0.55 +0.5
285,867 - EX31_RS07400 0.55 +0.1
285,867 - EX31_RS07400 0.55 +1.3
285,867 - EX31_RS07400 0.55 +1.0
285,867 - EX31_RS07400 0.55 +0.6
285,881 + EX31_RS07400 0.57 +0.5
285,881 + EX31_RS07400 0.57 +2.2
285,881 + EX31_RS07400 0.57 -0.0
285,882 - EX31_RS07400 0.57 +0.2
285,882 - EX31_RS07400 0.57 -0.1
285,882 - EX31_RS07400 0.57 +0.6
285,882 - EX31_RS07400 0.57 +1.0
285,882 - EX31_RS07400 0.57 +0.5
285,945 + EX31_RS07400 0.66 +0.5
285,946 - EX31_RS07400 0.67 -0.4
286,090 + EX31_RS07400 0.87 +3.5
286,091 - EX31_RS07400 0.87 +1.0
286,091 - EX31_RS07400 0.87 +0.7
286,091 - EX31_RS07400 0.87 +1.5
286,156 - +0.1
286,205 - -0.6
286,220 + +0.8
286,220 + +1.0
286,280 + -0.3
286,281 - +0.7
286,281 - -0.0
286,281 - -1.4
286,281 - +0.4
286,286 + +0.1
286,287 - +2.0
286,287 - +0.2
286,287 - -1.0
286,287 - +0.8
286,287 - -0.8
286,322 - +0.9
286,508 - -0.6
286,508 - -0.1
286,508 - +0.4
286,577 + -1.6
286,578 - +1.0
286,578 - +1.0
286,578 - -1.2
286,609 + +1.5
286,634 - +1.2
286,679 + -0.3
286,696 + +3.5
286,697 - -1.8
286,697 - +0.2
286,697 - +0.6
286,697 - +2.0
286,697 - -0.8
286,712 - +1.4
286,835 + +1.1
286,837 + +0.4
286,880 + -0.0
286,880 + +1.4
286,881 - +0.2
287,044 - +0.7
287,044 - -0.4
287,044 - +1.3
287,064 - -1.4
287,237 - EX31_RS07405 0.10 +0.6
287,423 - EX31_RS07405 0.13 -1.1
287,512 + EX31_RS07405 0.14 +0.2
287,512 + EX31_RS07405 0.14 +1.1
287,513 - EX31_RS07405 0.14 -0.8
287,513 - EX31_RS07405 0.14 +1.5
287,513 - EX31_RS07405 0.14 +0.1
287,634 + EX31_RS07405 0.15 +0.3
287,635 - EX31_RS07405 0.15 +0.2
287,732 - EX31_RS07405 0.16 -0.7
287,732 - EX31_RS07405 0.16 +0.8
287,732 - EX31_RS07405 0.16 +0.9
288,182 - EX31_RS07405 0.22 -0.5
288,182 - EX31_RS07405 0.22 +0.6
288,182 - EX31_RS07405 0.22 -0.5
288,182 - EX31_RS07405 0.22 -0.6
288,239 + EX31_RS07405 0.22 +1.0
288,261 + EX31_RS07405 0.22 -0.7
288,261 + EX31_RS07405 0.22 +0.7
288,262 - EX31_RS07405 0.22 -0.6
288,342 - EX31_RS07405 0.23 -1.2
288,372 + EX31_RS07405 0.24 -0.6
288,373 - EX31_RS07405 0.24 +0.6
288,373 - EX31_RS07405 0.24 +0.6
288,373 - EX31_RS07405 0.24 -1.0
288,373 - EX31_RS07405 0.24 +1.0
288,373 - EX31_RS07405 0.24 +0.7
288,407 + EX31_RS07405 0.24 -0.3
288,422 + EX31_RS07405 0.24 +2.3
288,422 + EX31_RS07405 0.24 +1.0
288,423 - EX31_RS07405 0.24 -1.2
288,423 - EX31_RS07405 0.24 +0.1
288,518 - EX31_RS07405 0.25 -0.0
288,599 + EX31_RS07405 0.26 +0.7
288,599 + EX31_RS07405 0.26 -0.6
288,600 - EX31_RS07405 0.26 +1.0
288,850 - EX31_RS07405 0.29 +0.5
288,850 - EX31_RS07405 0.29 +0.5
289,161 + EX31_RS07405 0.33 +0.4
289,161 + EX31_RS07405 0.33 -1.5
289,289 + EX31_RS07405 0.34 -0.8
289,319 + EX31_RS07405 0.35 -0.0
289,320 - EX31_RS07405 0.35 +0.2
289,379 + EX31_RS07405 0.36 +1.0
289,379 + EX31_RS07405 0.36 +2.2
289,380 - EX31_RS07405 0.36 +0.7
289,380 - EX31_RS07405 0.36 +2.0
289,380 - EX31_RS07405 0.36 +0.6
289,744 - EX31_RS07405 0.40 +0.5
289,744 - EX31_RS07405 0.40 -0.4
289,755 - EX31_RS07405 0.40 +0.0
289,810 + EX31_RS07405 0.41 +0.1
289,811 - EX31_RS07405 0.41 +1.8
289,848 - EX31_RS07405 0.41 +2.0
289,848 - EX31_RS07405 0.41 +1.0
289,972 + EX31_RS07405 0.42 +0.4
289,972 + EX31_RS07405 0.42 -0.0
289,989 - EX31_RS07405 0.43 +0.2
290,006 + EX31_RS07405 0.43 +1.5
290,007 - EX31_RS07405 0.43 +0.6
290,007 - EX31_RS07405 0.43 -0.4
290,009 + EX31_RS07405 0.43 +0.2
290,010 - EX31_RS07405 0.43 +1.2
290,240 + EX31_RS07405 0.46 +1.5
290,241 - EX31_RS07405 0.46 +0.6
290,276 - EX31_RS07405 0.46 +0.8
290,441 - EX31_RS07405 0.48 -0.8
290,441 - EX31_RS07405 0.48 -1.2
290,473 + EX31_RS07405 0.48 -0.0
290,473 + EX31_RS07405 0.48 -1.2
290,489 - EX31_RS07405 0.49 -0.0
290,498 - EX31_RS07405 0.49 +0.2
290,621 + EX31_RS07405 0.50 +1.0
290,726 + EX31_RS07405 0.51 +0.1
290,936 - EX31_RS07405 0.54 +1.0
291,333 - EX31_RS07405 0.58 +1.0
291,333 - EX31_RS07405 0.58 -0.6
291,335 + EX31_RS07405 0.58 +1.1
291,336 - EX31_RS07405 0.58 +0.3
291,336 - EX31_RS07405 0.58 +0.4
291,386 + EX31_RS07405 0.59 +1.4
291,554 - EX31_RS07405 0.61 -0.2
291,589 + EX31_RS07405 0.61 +1.0
291,597 - EX31_RS07405 0.61 +0.5
291,653 + EX31_RS07405 0.62 +1.6
292,007 + EX31_RS07405 0.66 +2.0
292,007 + EX31_RS07405 0.66 +1.1
292,008 - EX31_RS07405 0.66 -0.5
292,052 - EX31_RS07405 0.67 +0.4
292,164 + EX31_RS07405 0.68 -0.4
292,165 - EX31_RS07405 0.68 +0.1
292,171 + EX31_RS07405 0.68 +1.7
292,332 - EX31_RS07405 0.70 +1.6
292,577 - EX31_RS07405 0.73 +1.5
292,597 + EX31_RS07405 0.73 +0.5
292,597 + EX31_RS07405 0.73 +1.4
292,597 + EX31_RS07405 0.73 -0.0
292,598 - EX31_RS07405 0.73 +2.0
292,598 - EX31_RS07405 0.73 -1.0
292,633 + EX31_RS07405 0.74 +2.0
292,634 - EX31_RS07405 0.74 +2.0
292,634 - EX31_RS07405 0.74 +0.6
292,706 + EX31_RS07405 0.74 -0.5
292,706 + EX31_RS07405 0.74 -1.4
292,707 - EX31_RS07405 0.74 +1.1
292,763 - EX31_RS07405 0.75 +1.1
292,763 - EX31_RS07405 0.75 -0.4
292,767 - EX31_RS07405 0.75 +1.2
292,883 - EX31_RS07405 0.77 -2.7
293,008 + EX31_RS07405 0.78 +0.4
293,008 + EX31_RS07405 0.78 +2.0
293,008 + EX31_RS07405 0.78 -1.3
293,120 - EX31_RS07405 0.79 +2.0
293,174 + EX31_RS07405 0.80 -0.8
293,175 - EX31_RS07405 0.80 +0.8
293,175 - EX31_RS07405 0.80 -0.4
293,198 + EX31_RS07405 0.80 +0.8
293,199 - EX31_RS07405 0.80 +0.6
293,200 + EX31_RS07405 0.80 +2.0
293,200 + EX31_RS07405 0.80 -0.2
293,542 - EX31_RS07405 0.84 -0.0
293,585 - EX31_RS07405 0.85 +0.8
293,586 + EX31_RS07405 0.85 +0.4
293,587 - EX31_RS07405 0.85 +1.8
293,587 - EX31_RS07405 0.85 +2.4
293,587 - EX31_RS07405 0.85 -0.8
293,587 - EX31_RS07405 0.85 +0.4
293,740 + EX31_RS07405 0.87 +2.4
293,740 + EX31_RS07405 0.87 -1.0
293,740 + EX31_RS07405 0.87 +0.5
293,741 - EX31_RS07405 0.87 +0.2
293,743 + EX31_RS07405 0.87 +1.0
293,863 + EX31_RS07405 0.88 -0.3
294,251 + -2.2
294,364 - +0.6
294,397 + -1.8
294,475 + +1.0
294,578 - +0.3
294,592 - -0.0
294,688 - +2.3
294,688 - -1.0
294,839 + +1.1
294,873 - +1.0
294,898 + -0.5
294,899 - +2.0
295,012 + +0.5
295,020 + -1.2
295,020 + +0.2
295,021 - -0.0
295,021 - +1.5
295,024 - +1.0
295,032 + +0.7
295,116 + -1.5
295,133 - +1.0
295,173 - +0.8
295,182 + +0.4
295,183 - +2.2
295,245 - +1.0
295,323 + EX31_RS07410 0.14 +1.0
295,323 + EX31_RS07410 0.14 -0.2
295,618 + EX31_RS07410 0.60 +0.2
295,642 + EX31_RS07410 0.64 +1.4
295,643 - EX31_RS07410 0.64 +0.9
295,643 - EX31_RS07410 0.64 +0.6
295,870 + +0.6
295,870 + +1.6

Or see this region's nucleotide sequence